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VALCAP files for Ma et al. (2019) SCMC Hybrid

VALCAP files for Ma et al. (2019) Genome Biology (accepted) titled “Analysis of error profiles in deep next-generation sequencing data"

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DUO:0000042
version: 2019-01-07

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Learn more about the PCGP, disease types, publications, the PCGP Data Access Committee, and instructions to access data via EGA: https://pecan.stjude.cloud/permalink/pcgp Complete the attached Data Access Agreement (DAA), adhering to the following guidance, and return it to pcgpdaccoordinator@stjude.org: - Requests must be made for individual datasets (EGAD ID), not full studies (EGAS ID). - A separate DAA must be submitted for each dataset AND all original pages must be included. - The first listed applicant should be the Principal Investigator, Head of Department, or Department Chair leading the project. This should not be a staff scientist or postdoctoral researcher. - The email address used to access the dataset(s) must be a work-related email, not a personal email. - The signature of the “Institutional or Administrative Authority” must be an individual with the authority to sign documents on behalf of the requesting institution. This individual is known as the Authorized Organizational Representative (AOR) and is typically someone in the requesting institution's legal department or grants office. Heads/Chairs of Departments cannot sign as the Institutional or Administrative Authority. - Not adhering to these policies will delay your application. Once we receive your completed application, the DAC review typically takes approximately 15-20 business days. - If we do not receive a completed DAA from you within 90 days, we will consider this application closed and reject your request in the EGA portal. You may resubmit later as needed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003444 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002382440 bam 6.9 GB Report
EGAF00002382441 bam 5.3 GB Report
EGAF00002382442 bam 5.8 GB Report
EGAF00002382443 bam 6.5 GB Report
EGAF00002382444 bam 6.2 GB Report
EGAF00002382445 bam 5.9 GB Report
EGAF00002382446 bam 4.4 GB Report
EGAF00002382447 bam 4.8 GB Report
EGAF00002382448 bam 9.2 GB Report
EGAF00002382449 bam 4.9 GB Report
EGAF00002382450 bam 4.9 GB Report
EGAF00002382451 bam 5.8 GB Report
EGAF00002382452 bam 4.6 GB Report
EGAF00002382453 bam 4.6 GB Report
EGAF00002382454 bam 4.5 GB Report
EGAF00002382455 bam 4.5 GB Report
EGAF00002382456 bam 8.7 GB Report
EGAF00002382457 bam 11.1 GB Report
EGAF00002382458 bam 6.4 GB Report
EGAF00002382459 bam 6.1 GB Report
EGAF00002382460 bam 8.3 GB Report
EGAF00002382461 bam 10.1 GB Report
EGAF00002382462 bam 9.4 GB Report
EGAF00002382463 bam 3.4 GB Report
EGAF00002382464 bam 4.4 GB Report
EGAF00002382465 bam 4.2 GB Report
EGAF00002382466 bam 4.1 GB Report
EGAF00002382467 bam 6.0 GB Report
EGAF00002382468 bam 6.0 GB Report
EGAF00002382469 bam 5.2 GB Report
EGAF00002382470 bam 7.3 GB Report
EGAF00002382471 bam 4.9 GB Report
EGAF00002382472 bam 8.1 GB Report
EGAF00002382473 bam 7.6 GB Report
EGAF00002382474 bam 5.1 GB Report
EGAF00002382475 bam 4.2 GB Report
EGAF00002382476 bam 4.6 GB Report
EGAF00002382477 bam 4.3 GB Report
EGAF00002382478 bam 4.0 GB Report
EGAF00002382479 bam 5.3 GB Report
EGAF00002382480 bam 6.5 GB Report
EGAF00002382481 bam 5.2 GB Report
EGAF00002382482 bam 3.5 GB Report
EGAF00002382483 bam 5.6 GB Report
EGAF00002382484 bam 5.0 GB Report
EGAF00002382485 bam 4.6 GB Report
EGAF00002382486 bam 7.1 GB Report
47 Files (275.0 GB)