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WXS files for paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes'

Paired whole exome sequencing for 32 primary MDS, 14 MDS/MPN, and 8 AML-MRC cases (total = 54). Normal comparator genomic DNA was extracted from lymphocytes purified by flow cytometry. Bulk myeloid cells were used as a source of tumor gDNA. Files uploaded are mapped BAM files.

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DUO:0000042
version: 2019-01-07

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

Learn more about the PCGP, disease types, publications, the PCGP Data Access Committee, and instructions to access data via EGA: https://pecan.stjude.cloud/permalink/pcgp Complete the attached Data Access Agreement (DAA), adhering to the following guidance, and return it to pcgpdaccoordinator@stjude.org: - Requests must be made for individual datasets (EGAD ID), not full studies (EGAS ID). - A separate DAA must be submitted for each dataset AND all original pages must be included. - The first listed applicant should be the Principal Investigator, Head of Department, or Department Chair leading the project. This should not be a staff scientist or postdoctoral researcher. - The email address used to access the dataset(s) must be a work-related email, not a personal email. - The signature of the “Institutional or Administrative Authority” must be an individual with the authority to sign documents on behalf of the requesting institution. This individual is known as the Authorized Organizational Representative (AOR) and is typically someone in the requesting institution's legal department or grants office. Heads/Chairs of Departments cannot sign as the Institutional or Administrative Authority. - Not adhering to these policies will delay your application. Once we receive your completed application, the DAC review typically takes approximately 15-20 business days. - If we do not receive a completed DAA from you within 90 days, we will consider this application closed and reject your request in the EGA portal. You may resubmit later as needed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002202 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00001772723 bam 11.0 GB Report
EGAF00001772724 bam 8.9 GB Report
EGAF00001772725 bam 9.8 GB Report
EGAF00001772726 bam 10.0 GB Report
EGAF00001772727 bam 9.1 GB Report
EGAF00001772728 bam 10.7 GB Report
EGAF00001772754 bam 9.4 GB Report
EGAF00001772755 bam 9.4 GB Report
EGAF00001772756 bam 11.2 GB Report
EGAF00001772757 bam 14.2 GB Report
EGAF00001772758 bam 8.1 GB Report
EGAF00001772759 bam 7.2 GB Report
EGAF00001772760 bam 10.2 GB Report
EGAF00001772761 bam 10.3 GB Report
EGAF00001772762 bam 9.2 GB Report
EGAF00001772763 bam 11.8 GB Report
EGAF00001772764 bam 13.2 GB Report
EGAF00001772765 bam 13.0 GB Report
EGAF00001772766 bam 11.9 GB Report
EGAF00001772767 bam 7.4 GB Report
EGAF00001772768 bam 13.0 GB Report
EGAF00001772769 bam 12.1 GB Report
EGAF00001772770 bam 13.4 GB Report
EGAF00001772771 bam 12.9 GB Report
EGAF00001772772 bam 21.8 GB Report
EGAF00001772773 bam 10.5 GB Report
EGAF00001772774 bam 5.8 GB Report
EGAF00001772775 bam 7.1 GB Report
EGAF00001772776 bam 10.1 GB Report
EGAF00001772777 bam 14.2 GB Report
EGAF00001772778 bam 11.9 GB Report
EGAF00001772793 bam 9.3 GB Report
EGAF00001772794 bam 12.4 GB Report
EGAF00001772795 bam 11.3 GB Report
EGAF00001772796 bam 13.3 GB Report
EGAF00001772797 bam 10.4 GB Report
EGAF00001772798 bam 11.7 GB Report
EGAF00001772799 bam 12.5 GB Report
EGAF00001772800 bam 10.4 GB Report
EGAF00001772801 bam 9.4 GB Report
EGAF00001772802 bam 10.8 GB Report
EGAF00001772803 bam 11.1 GB Report
EGAF00001772804 bam 7.7 GB Report
EGAF00001772805 bam 8.1 GB Report
EGAF00001772806 bam 8.6 GB Report
EGAF00001772807 bam 10.9 GB Report
EGAF00001772808 bam 9.8 GB Report
EGAF00001772809 bam 11.4 GB Report
EGAF00001772810 bam 8.3 GB Report
EGAF00001772811 bam 11.2 GB Report
EGAF00001772812 bam 8.2 GB Report
EGAF00001772813 bam 9.4 GB Report
EGAF00001772814 bam 9.7 GB Report
EGAF00001772815 bam 9.1 GB Report
EGAF00001772816 bam 8.9 GB Report
EGAF00001772817 bam 9.7 GB Report
EGAF00001772818 bam 8.9 GB Report
EGAF00001772819 bam 11.6 GB Report
EGAF00001772820 bam 14.0 GB Report
EGAF00001772821 bam 12.7 GB Report
EGAF00001772822 bam 9.4 GB Report
EGAF00001772823 bam 11.5 GB Report
EGAF00001772824 bam 11.7 GB Report
EGAF00001772825 bam 10.1 GB Report
EGAF00001772826 bam 15.2 GB Report
EGAF00001772827 bam 13.5 GB Report
EGAF00001772828 bam 8.1 GB Report
EGAF00001772829 bam 10.3 GB Report
EGAF00001772830 bam 9.3 GB Report
EGAF00001772831 bam 12.5 GB Report
EGAF00001772832 bam 7.9 GB Report
EGAF00001772833 bam 8.0 GB Report
EGAF00001772834 bam 12.0 GB Report
EGAF00001772835 bam 12.9 GB Report
EGAF00001772836 bam 9.7 GB Report
EGAF00001772837 bam 14.2 GB Report
EGAF00001772838 bam 9.4 GB Report
EGAF00001772839 bam 12.5 GB Report
EGAF00001772840 bam 9.0 GB Report
EGAF00001772841 bam 16.4 GB Report
EGAF00001772842 bam 13.3 GB Report
EGAF00001772843 bam 10.7 GB Report
EGAF00001772844 bam 9.6 GB Report
EGAF00001772845 bam 11.8 GB Report
EGAF00001772846 bam 9.5 GB Report
EGAF00001772847 bam 12.6 GB Report
EGAF00001772848 bam 9.8 GB Report
EGAF00001772849 bam 11.2 GB Report
EGAF00001772850 bam 9.1 GB Report
EGAF00001772851 bam 10.2 GB Report
EGAF00001772852 bam 8.5 GB Report
EGAF00001772853 bam 14.6 GB Report
EGAF00001772854 bam 11.8 GB Report
EGAF00001772855 bam 13.3 GB Report
94 Files (1.0 TB)