single-cell transcriptomics data from immune cells

Dataset ID Technology Samples
EGAD00001004081 Illumina HiSeq 4000 1

Dataset Description

Smart-seq2 protocol was used to perform single cell RNA-sequencing on 465 immune cells. The immune cells analysed include 215 HLA-DQ2: gluten-(DQ2.5-glia-α1, -α2, -ω1, and -ω2) tetramer-sorted T cells, 247 transglutaminase 2 (TG2)-positive plasma cells from intestinal biopsy or peripheral blood from celiac disease patients, and 3 unassigned cells in 3 batches.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Department of Immunology, University of Oslo
Contact person: Shuo-Wang Qiao
Email: s [dot] w [dot] qiao [at] medisin [dot] uio [dot] no
More details: EGAC00001000877


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