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Whole exome sequencing of myxofibrosarcoma

Whole exome sequencing (fastq files) of 41 pairs (82 samples) of myxofibrosarcoma

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DATA ACCESS AGREEMENT

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom XXXXX grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: XXXXX and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. XXXXX: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify XXXXX within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify XXXXX prior to any significant changes to the protocol for the Project. 14. The User Institution will notify XXXXX as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. XXXXX may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than XXXXX. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002889 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001998008 fastq.bz2 10.1 GB
EGAF00001998009 fastq.bz2 9.8 GB
EGAF00001998010 fastq.bz2 4.1 GB
EGAF00001998011 fastq.bz2 3.9 GB
EGAF00001998012 fastq.bz2 8.3 GB
EGAF00001998013 fastq.bz2 8.1 GB
EGAF00001998014 fastq.bz2 3.8 GB
EGAF00001998015 fastq.bz2 3.7 GB
EGAF00001998016 fastq.bz2 6.6 GB
EGAF00001998017 fastq.bz2 6.5 GB
EGAF00001998018 fastq.bz2 4.7 GB
EGAF00001998019 fastq.bz2 4.5 GB
EGAF00001998020 fastq.bz2 9.8 GB
EGAF00001998021 fastq.bz2 9.5 GB
EGAF00001998022 fastq.bz2 3.5 GB
EGAF00001998023 fastq.bz2 3.4 GB
EGAF00001998024 fastq.bz2 7.5 GB
EGAF00001998025 fastq.bz2 7.3 GB
EGAF00001998026 fastq.bz2 5.2 GB
EGAF00001998027 fastq.bz2 5.0 GB
EGAF00001998028 fastq.bz2 3.4 GB
EGAF00001998029 fastq.bz2 3.3 GB
EGAF00001998030 fastq.bz2 4.4 GB
EGAF00001998031 fastq.bz2 4.2 GB
EGAF00001998032 fastq.bz2 3.9 GB
EGAF00001998033 fastq.bz2 3.7 GB
EGAF00001998034 fastq.bz2 3.3 GB
EGAF00001998035 fastq.bz2 3.1 GB
EGAF00001998036 fastq.bz2 7.1 GB
EGAF00001998037 fastq.bz2 7.1 GB
EGAF00001998038 fastq.bz2 2.2 GB
EGAF00001998039 fastq.bz2 2.2 GB
EGAF00001998040 fastq.bz2 3.4 GB
EGAF00001998041 fastq.bz2 3.4 GB
EGAF00001998042 fastq.bz2 3.5 GB
EGAF00001998043 fastq.bz2 3.5 GB
EGAF00001998044 fastq.bz2 9.2 GB
EGAF00001998045 fastq.bz2 9.1 GB
EGAF00001998046 fastq.bz2 4.5 GB
EGAF00001998047 fastq.bz2 4.4 GB
EGAF00001998048 fastq.bz2 11.7 GB
EGAF00001998049 fastq.bz2 11.5 GB
EGAF00001998050 fastq.bz2 6.9 GB
EGAF00001998051 fastq.bz2 6.8 GB
EGAF00001998052 fastq.bz2 6.0 GB
EGAF00001998053 fastq.bz2 5.9 GB
EGAF00001998054 fastq.bz2 4.8 GB
EGAF00001998055 fastq.bz2 4.7 GB
EGAF00001998056 fastq.bz2 3.3 GB
EGAF00001998057 fastq.bz2 3.3 GB
EGAF00001998058 fastq.bz2 7.5 GB
EGAF00001998059 fastq.bz2 7.3 GB
EGAF00001998060 fastq.bz2 8.5 GB
EGAF00001998061 fastq.bz2 8.3 GB
EGAF00001998062 fastq.bz2 2.8 GB
EGAF00001998063 fastq.bz2 2.7 GB
EGAF00001998064 fastq.bz2 7.8 GB
EGAF00001998065 fastq.bz2 7.7 GB
EGAF00001998066 fastq.bz2 2.3 GB
EGAF00001998067 fastq.bz2 2.3 GB
EGAF00001998068 fastq.bz2 8.5 GB
EGAF00001998069 fastq.bz2 8.6 GB
EGAF00001998070 fastq.bz2 3.4 GB
EGAF00001998071 fastq.bz2 3.5 GB
EGAF00001998072 fastq.bz2 7.1 GB
EGAF00001998073 fastq.bz2 7.2 GB
EGAF00001998074 fastq.bz2 2.0 GB
EGAF00001998075 fastq.bz2 2.1 GB
EGAF00001998076 fastq.bz2 7.2 GB
EGAF00001998077 fastq.bz2 7.3 GB
EGAF00001998078 fastq.bz2 3.0 GB
EGAF00001998079 fastq.bz2 3.0 GB
EGAF00001998080 fastq.bz2 10.4 GB
EGAF00001998081 fastq.bz2 10.4 GB
EGAF00001998082 fastq.bz2 4.3 GB
EGAF00001998083 fastq.bz2 4.4 GB
EGAF00001998084 fastq.bz2 7.2 GB
EGAF00001998085 fastq.bz2 7.2 GB
EGAF00001998086 fastq.bz2 5.6 GB
EGAF00001998087 fastq.bz2 5.7 GB
EGAF00001998088 fastq.bz2 7.7 GB
EGAF00001998089 fastq.bz2 7.7 GB
EGAF00001998090 fastq.bz2 3.7 GB
EGAF00001998091 fastq.bz2 3.8 GB
EGAF00001998092 fastq.bz2 7.8 GB
EGAF00001998093 fastq.bz2 7.9 GB
EGAF00001998094 fastq.bz2 3.3 GB
EGAF00001998095 fastq.bz2 3.4 GB
EGAF00001998096 fastq.bz2 10.2 GB
EGAF00001998097 fastq.bz2 10.4 GB
EGAF00001998098 fastq.bz2 2.5 GB
EGAF00001998099 fastq.bz2 2.5 GB
EGAF00001998100 fastq.bz2 9.4 GB
EGAF00001998101 fastq.bz2 9.5 GB
EGAF00001998102 fastq.bz2 5.1 GB
EGAF00001998103 fastq.bz2 5.2 GB
EGAF00001998104 fastq.bz2 6.3 GB
EGAF00001998105 fastq.bz2 6.3 GB
EGAF00001998106 fastq.bz2 7.1 GB
EGAF00001998107 fastq.bz2 7.2 GB
EGAF00001998108 fastq.bz2 5.6 GB
EGAF00001998109 fastq.bz2 5.6 GB
EGAF00001998110 fastq.bz2 3.5 GB
EGAF00001998111 fastq.bz2 3.6 GB
EGAF00001998112 fastq.bz2 10.8 GB
EGAF00001998113 fastq.bz2 11.0 GB
EGAF00001998114 fastq.bz2 4.2 GB
EGAF00001998115 fastq.bz2 4.3 GB
EGAF00001998116 fastq.bz2 3.6 GB
EGAF00001998117 fastq.bz2 3.6 GB
EGAF00001998118 fastq.bz2 4.8 GB
EGAF00001998119 fastq.bz2 4.8 GB
EGAF00001998120 fastq.bz2 9.9 GB
EGAF00001998121 fastq.bz2 9.8 GB
EGAF00001998122 fastq.bz2 3.9 GB
EGAF00001998123 fastq.bz2 4.0 GB
EGAF00001998124 fastq.bz2 7.6 GB
EGAF00001998125 fastq.bz2 7.6 GB
EGAF00001998126 fastq.bz2 4.0 GB
EGAF00001998127 fastq.bz2 4.0 GB
EGAF00001998128 fastq.bz2 8.5 GB
EGAF00001998129 fastq.bz2 8.5 GB
EGAF00001998130 fastq.bz2 2.6 GB
EGAF00001998131 fastq.bz2 2.6 GB
EGAF00001998132 fastq.bz2 9.3 GB
EGAF00001998133 fastq.bz2 9.3 GB
EGAF00001998134 fastq.bz2 3.8 GB
EGAF00001998135 fastq.bz2 3.9 GB
EGAF00001998136 fastq.bz2 6.3 GB
EGAF00001998137 fastq.bz2 6.4 GB
EGAF00001998138 fastq.bz2 4.4 GB
EGAF00001998139 fastq.bz2 4.5 GB
EGAF00001998140 fastq.bz2 7.6 GB
EGAF00001998141 fastq.bz2 7.6 GB
EGAF00001998142 fastq.bz2 3.7 GB
EGAF00001998143 fastq.bz2 3.7 GB
EGAF00001998144 fastq.bz2 8.0 GB
EGAF00001998145 fastq.bz2 8.0 GB
EGAF00001998146 fastq.bz2 3.3 GB
EGAF00001998147 fastq.bz2 3.4 GB
EGAF00001998148 fastq.bz2 7.7 GB
EGAF00001998149 fastq.bz2 7.7 GB
EGAF00001998150 fastq.bz2 3.6 GB
EGAF00001998151 fastq.bz2 3.7 GB
EGAF00001998152 fastq.bz2 4.1 GB
EGAF00001998153 fastq.bz2 4.1 GB
EGAF00001998154 fastq.bz2 5.2 GB
EGAF00001998155 fastq.bz2 5.3 GB
EGAF00001998156 fastq.bz2 7.7 GB
EGAF00001998157 fastq.bz2 7.7 GB
EGAF00001998158 fastq.bz2 5.1 GB
EGAF00001998159 fastq.bz2 5.2 GB
EGAF00001998160 fastq.bz2 5.0 GB
EGAF00001998161 fastq.bz2 5.1 GB
EGAF00001998162 fastq.bz2 5.1 GB
EGAF00001998163 fastq.bz2 5.1 GB
EGAF00001998164 fastq.bz2 8.5 GB
EGAF00001998165 fastq.bz2 8.5 GB
EGAF00001998166 fastq.bz2 6.0 GB
EGAF00001998167 fastq.bz2 6.1 GB
EGAF00001998168 fastq.bz2 9.0 GB
EGAF00001998169 fastq.bz2 9.1 GB
EGAF00001998170 fastq.bz2 5.9 GB
EGAF00001998171 fastq.bz2 6.0 GB
164 Files (959.3 GB)