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Whole exome and targeted DNA sequencing data for formalin-fixed paraffin embedded tissue from de novo small cell prostatic carcinoma cases

This dataset consists of 44 compressed paired fastq files, 15 of which are generated from whole exome sequencing, and 29 of which are generated from DNA sequencing using a targeted gene panel capturing the exonic regions of 73 prostate cancer driver genes. Targeted DNA sequencing was performed on an Illumina MiSeq (v3 600 cycle kit), and exome sequencing was done using an Illumina HiSeq 2500 (v4 250 cycle kit) machine. The fastq files are named in accordance with the sample aliases provided, which reflect the pathology of interest to this study (small cell prostatic carcinoma--SCPC), whether it was sequenced using an exome or targeted gene panel, whether the FFPE sample was sourced from tumor or benign tissue (labeled T or B, respectively), and whether there exists multiple samples belonging to a single patient.

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Data Access Committee for the DNA sequencing data included in the study "Biallelic tumor suppressor loss and DNA repair defects in de novo small cell prostate cancer".

A data access agreement (DAA), based on the example DAA provided by EGA, is to be filled out by the requester and SCPC Data Access Committee.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003007 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002012934 fastq.gz 221.3 MB
EGAF00002012935 fastq.gz 223.3 MB
EGAF00002012936 fastq.gz 686.0 MB
EGAF00002012937 fastq.gz 698.8 MB
EGAF00002012938 fastq.gz 876.7 MB
EGAF00002012939 fastq.gz 896.4 MB
EGAF00002012940 fastq.gz 593.5 MB
EGAF00002012941 fastq.gz 592.6 MB
EGAF00002012942 fastq.gz 351.3 MB
EGAF00002012943 fastq.gz 343.4 MB
EGAF00002012944 fastq.gz 251.1 MB
EGAF00002012945 fastq.gz 256.9 MB
EGAF00002012946 fastq.gz 999.0 MB
EGAF00002012947 fastq.gz 1.0 GB
EGAF00002012948 fastq.gz 382.5 MB
EGAF00002012949 fastq.gz 375.2 MB
EGAF00002012950 fastq.gz 420.6 MB
EGAF00002012951 fastq.gz 425.3 MB
EGAF00002012952 fastq.gz 442.6 MB
EGAF00002012953 fastq.gz 432.9 MB
EGAF00002012954 fastq.gz 1.2 GB
EGAF00002012955 fastq.gz 1.2 GB
EGAF00002012956 fastq.gz 562.2 MB
EGAF00002012957 fastq.gz 558.9 MB
EGAF00002012958 fastq.gz 188.8 MB
EGAF00002012959 fastq.gz 183.0 MB
EGAF00002012960 fastq.gz 1.8 GB
EGAF00002012961 fastq.gz 1.7 GB
EGAF00002012962 fastq.gz 738.5 MB
EGAF00002012963 fastq.gz 732.7 MB
EGAF00002012964 fastq.gz 537.5 MB
EGAF00002012965 fastq.gz 523.8 MB
EGAF00002012966 fastq.gz 480.8 MB
EGAF00002012967 fastq.gz 470.9 MB
EGAF00002012968 fastq.gz 259.1 MB
EGAF00002012969 fastq.gz 257.9 MB
EGAF00002012970 fastq.gz 935.5 MB
EGAF00002012971 fastq.gz 951.3 MB
EGAF00002012972 fastq.gz 578.6 MB
EGAF00002012973 fastq.gz 569.5 MB
EGAF00002012974 fastq.gz 442.1 MB
EGAF00002012975 fastq.gz 440.9 MB
EGAF00002012976 fastq.gz 590.9 MB
EGAF00002012977 fastq.gz 594.4 MB
EGAF00002012978 fastq.gz 272.9 MB
EGAF00002012979 fastq.gz 276.3 MB
EGAF00002012980 fastq.gz 574.3 MB
EGAF00002012981 fastq.gz 571.8 MB
EGAF00002012982 fastq.gz 367.5 MB
EGAF00002012983 fastq.gz 369.8 MB
EGAF00002012984 fastq.gz 2.0 GB
EGAF00002012985 fastq.gz 2.0 GB
EGAF00002012986 fastq.gz 4.0 GB
EGAF00002012987 fastq.gz 4.1 GB
EGAF00002012988 fastq.gz 4.7 GB
EGAF00002012989 fastq.gz 4.7 GB
EGAF00002012990 fastq.gz 3.9 GB
EGAF00002012991 fastq.gz 4.0 GB
EGAF00002012992 fastq.gz 2.5 GB
EGAF00002012993 fastq.gz 2.5 GB
EGAF00002012994 fastq.gz 2.2 GB
EGAF00002012995 fastq.gz 2.3 GB
EGAF00002012996 fastq.gz 2.0 GB
EGAF00002012997 fastq.gz 2.0 GB
EGAF00002012998 fastq.gz 2.2 GB
EGAF00002012999 fastq.gz 2.2 GB
EGAF00002013000 fastq.gz 2.4 GB
EGAF00002013001 fastq.gz 2.3 GB
EGAF00002013002 fastq.gz 2.5 GB
EGAF00002013003 fastq.gz 2.6 GB
EGAF00002013004 fastq.gz 1.5 GB
EGAF00002013005 fastq.gz 1.5 GB
EGAF00002013006 fastq.gz 2.0 GB
EGAF00002013007 fastq.gz 2.0 GB
EGAF00002013008 fastq.gz 2.7 GB
EGAF00002013009 fastq.gz 2.7 GB
EGAF00002013010 fastq.gz 2.0 GB
EGAF00002013011 fastq.gz 2.1 GB
EGAF00002013012 fastq.gz 1.6 GB
EGAF00002013013 fastq.gz 1.6 GB
EGAF00002013014 fastq.gz 532.2 MB
EGAF00002013015 fastq.gz 533.6 MB
EGAF00002013016 fastq.gz 872.1 MB
EGAF00002013017 fastq.gz 888.6 MB
EGAF00002013018 fastq.gz 421.1 MB
EGAF00002013019 fastq.gz 410.4 MB
EGAF00002013939 fastq.gz 674.1 MB
EGAF00002013940 fastq.gz 684.7 MB
88 Files (111.0 GB)