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86 paired-end MiSeq 16S rRNA sequencing samples

We compared bacterial communities in breast milk from teen (≤19 yr, n = 26) vs. adult (>19 yr, n = 56) mothers, normal weight (BMI 18.5-24.9, n = 63) vs. overweight (BMI ≥ 25, n = 19) mothers, primiparous (parity = 1, n = 41) vs. multiparous (parity > 1, n = 44), early (5-46d postpartum, n = 39) vs. established lactation (4-6 mo postpartum, n = 45), breastfeeding (EBF: PBF, n = 72) vs. mixed feeding (n = 11) and mothers with (Na/K ratio < 0.6, n = 75) and without SCM (Na/K ration ≥ 0.6, n = 10).

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16S milk policy

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Kristine G. Koski within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Kristine G. Koski prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Kristine G. Koski as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Kristine G. Koski may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Kristine G. Koski. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003044 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002025614 fastq.gz 22.0 MB
EGAF00002025615 fastq.gz 22.2 MB
EGAF00002025616 fastq.gz 37.8 MB
EGAF00002025617 fastq.gz 39.9 MB
EGAF00002025618 fastq.gz 23.6 MB
EGAF00002025619 fastq.gz 23.7 MB
EGAF00002025620 fastq.gz 33.2 MB
EGAF00002025621 fastq.gz 33.1 MB
EGAF00002025622 fastq.gz 34.6 MB
EGAF00002025623 fastq.gz 36.2 MB
EGAF00002025624 fastq.gz 33.3 MB
EGAF00002025625 fastq.gz 35.2 MB
EGAF00002025626 fastq.gz 37.2 MB
EGAF00002025627 fastq.gz 36.8 MB
EGAF00002025628 fastq.gz 35.3 MB
EGAF00002025629 fastq.gz 35.1 MB
EGAF00002025630 fastq.gz 26.6 MB
EGAF00002025631 fastq.gz 26.8 MB
EGAF00002025632 fastq.gz 29.4 MB
EGAF00002025633 fastq.gz 29.5 MB
EGAF00002025634 fastq.gz 30.4 MB
EGAF00002025635 fastq.gz 31.8 MB
EGAF00002025636 fastq.gz 32.6 MB
EGAF00002025637 fastq.gz 35.0 MB
EGAF00002025638 fastq.gz 34.5 MB
EGAF00002025639 fastq.gz 34.8 MB
EGAF00002025640 fastq.gz 32.9 MB
EGAF00002025641 fastq.gz 34.4 MB
EGAF00002025642 fastq.gz 38.1 MB
EGAF00002025643 fastq.gz 40.0 MB
EGAF00002025644 fastq.gz 30.9 MB
EGAF00002025645 fastq.gz 31.7 MB
EGAF00002025646 fastq.gz 30.2 MB
EGAF00002025647 fastq.gz 30.6 MB
EGAF00002025648 fastq.gz 34.8 MB
EGAF00002025649 fastq.gz 34.6 MB
EGAF00002025650 fastq.gz 32.8 MB
EGAF00002025651 fastq.gz 34.3 MB
EGAF00002025652 fastq.gz 34.7 MB
EGAF00002025653 fastq.gz 35.6 MB
EGAF00002025654 fastq.gz 30.9 MB
EGAF00002025655 fastq.gz 31.3 MB
EGAF00002025656 fastq.gz 22.1 MB
EGAF00002025657 fastq.gz 22.2 MB
EGAF00002025658 fastq.gz 32.5 MB
EGAF00002025659 fastq.gz 33.5 MB
EGAF00002025660 fastq.gz 24.8 MB
EGAF00002025661 fastq.gz 25.2 MB
EGAF00002025662 fastq.gz 4.2 MB
EGAF00002025663 fastq.gz 37.3 MB
EGAF00002025664 fastq.gz 33.2 MB
EGAF00002025665 fastq.gz 33.9 MB
EGAF00002025666 fastq.gz 33.6 MB
EGAF00002025667 fastq.gz 34.3 MB
EGAF00002025668 fastq.gz 31.7 MB
EGAF00002025669 fastq.gz 31.7 MB
EGAF00002025670 fastq.gz 21.5 MB
EGAF00002025671 fastq.gz 22.2 MB
EGAF00002025672 fastq.gz 42.0 MB
EGAF00002025673 fastq.gz 44.1 MB
EGAF00002025674 fastq.gz 31.5 MB
EGAF00002025675 fastq.gz 32.1 MB
EGAF00002025676 fastq.gz 45.0 MB
EGAF00002025677 fastq.gz 44.8 MB
EGAF00002025678 fastq.gz 23.6 MB
EGAF00002025679 fastq.gz 24.5 MB
EGAF00002025680 fastq.gz 29.7 MB
EGAF00002025681 fastq.gz 29.9 MB
EGAF00002025682 fastq.gz 31.6 MB
EGAF00002025683 fastq.gz 31.9 MB
EGAF00002025684 fastq.gz 33.2 MB
EGAF00002025685 fastq.gz 34.2 MB
EGAF00002025686 fastq.gz 29.6 MB
EGAF00002025687 fastq.gz 29.9 MB
EGAF00002025688 fastq.gz 25.6 MB
EGAF00002025689 fastq.gz 25.6 MB
EGAF00002025690 fastq.gz 25.9 MB
EGAF00002025691 fastq.gz 26.1 MB
EGAF00002025692 fastq.gz 32.8 MB
EGAF00002025693 fastq.gz 33.4 MB
EGAF00002025694 fastq.gz 29.2 MB
EGAF00002025695 fastq.gz 30.7 MB
EGAF00002025696 fastq.gz 30.3 MB
EGAF00002025697 fastq.gz 32.6 MB
EGAF00002025698 fastq.gz 35.9 MB
EGAF00002025699 fastq.gz 38.9 MB
EGAF00002025700 fastq.gz 33.7 MB
EGAF00002025701 fastq.gz 34.1 MB
EGAF00002025702 fastq.gz 29.7 MB
EGAF00002025703 fastq.gz 29.8 MB
EGAF00002025704 fastq.gz 23.6 MB
EGAF00002025705 fastq.gz 23.6 MB
EGAF00002025706 fastq.gz 27.5 MB
EGAF00002025707 fastq.gz 28.1 MB
EGAF00002025708 fastq.gz 34.0 MB
EGAF00002025709 fastq.gz 35.3 MB
EGAF00002025710 fastq.gz 29.3 MB
EGAF00002025711 fastq.gz 29.4 MB
EGAF00002025712 fastq.gz 26.6 MB
EGAF00002025713 fastq.gz 27.5 MB
EGAF00002025714 fastq.gz 29.9 MB
EGAF00002025715 fastq.gz 30.3 MB
EGAF00002025716 fastq.gz 33.0 MB
EGAF00002025717 fastq.gz 33.2 MB
EGAF00002025718 fastq.gz 21.0 MB
EGAF00002025719 fastq.gz 21.1 MB
EGAF00002025720 fastq.gz 28.8 MB
EGAF00002025721 fastq.gz 29.6 MB
EGAF00002025722 fastq.gz 38.3 MB
EGAF00002025723 fastq.gz 40.4 MB
EGAF00002025724 fastq.gz 31.8 MB
EGAF00002025725 fastq.gz 32.7 MB
EGAF00002025726 fastq.gz 25.3 MB
EGAF00002025727 fastq.gz 25.5 MB
EGAF00002025728 fastq.gz 24.1 MB
EGAF00002025729 fastq.gz 24.4 MB
EGAF00002025730 fastq.gz 17.2 MB
EGAF00002025731 fastq.gz 17.3 MB
EGAF00002025732 fastq.gz 37.2 MB
EGAF00002025733 fastq.gz 37.7 MB
EGAF00002025734 fastq.gz 31.9 MB
EGAF00002025735 fastq.gz 32.1 MB
EGAF00002025736 fastq.gz 35.7 MB
EGAF00002025737 fastq.gz 34.9 MB
EGAF00002025738 fastq.gz 42.7 MB
EGAF00002025739 fastq.gz 42.7 MB
EGAF00002025740 fastq.gz 50.4 MB
EGAF00002025741 fastq.gz 49.4 MB
EGAF00002025742 fastq.gz 37.8 MB
EGAF00002025743 fastq.gz 37.6 MB
EGAF00002025744 fastq.gz 35.7 MB
EGAF00002025745 fastq.gz 37.0 MB
EGAF00002025746 fastq.gz 33.5 MB
EGAF00002025747 fastq.gz 33.4 MB
EGAF00002025748 fastq.gz 34.7 MB
EGAF00002025749 fastq.gz 36.2 MB
EGAF00002025750 fastq.gz 50.6 MB
EGAF00002025751 fastq.gz 52.1 MB
EGAF00002025752 fastq.gz 37.2 MB
EGAF00002025753 fastq.gz 38.3 MB
EGAF00002025754 fastq.gz 31.1 MB
EGAF00002025755 fastq.gz 31.1 MB
EGAF00002025756 fastq.gz 38.7 MB
EGAF00002025757 fastq.gz 39.9 MB
EGAF00002025758 fastq.gz 38.8 MB
EGAF00002025759 fastq.gz 39.9 MB
EGAF00002025760 fastq.gz 29.0 MB
EGAF00002025761 fastq.gz 28.8 MB
EGAF00002025762 fastq.gz 31.3 MB
EGAF00002025763 fastq.gz 31.2 MB
EGAF00002025764 fastq.gz 40.9 MB
EGAF00002025765 fastq.gz 40.7 MB
EGAF00002025766 fastq.gz 30.8 MB
EGAF00002025767 fastq.gz 32.4 MB
EGAF00002025768 fastq.gz 33.8 MB
EGAF00002025769 fastq.gz 33.8 MB
EGAF00002025770 fastq.gz 12.5 MB
EGAF00002025771 fastq.gz 12.6 MB
EGAF00002025772 fastq.gz 40.2 MB
EGAF00002025773 fastq.gz 40.1 MB
EGAF00002025774 fastq.gz 32.4 MB
EGAF00002025775 fastq.gz 33.9 MB
EGAF00002025776 fastq.gz 31.7 MB
EGAF00002025777 fastq.gz 31.9 MB
EGAF00002025778 fastq.gz 32.1 MB
EGAF00002025779 fastq.gz 32.2 MB
EGAF00002025780 fastq.gz 35.1 MB
EGAF00002025781 fastq.gz 35.1 MB
EGAF00002025782 fastq.gz 32.2 MB
EGAF00002025783 fastq.gz 32.2 MB
EGAF00002025784 fastq.gz 26.4 MB
EGAF00002025785 fastq.gz 26.5 MB
172 Files (5.5 GB)