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Integrative genomic study of CML patients

This dataset contains WES and RNA-Seq fastq files for 65 CML patient samples at various stages of disease progression.

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Access Policy Document for SA Pathology

European Bioinformatics Institute European Molecular Biology LaboratoryWellcome Trust Genome CampusHinxton, Cambridge, CB10 1SDUnited KingdomDAC Name: EGAC00001000220DAC Accession: ena-DAC-sacgf-04-08-2014-07:09:22:971-98This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document by Paul Flicek, head of Genes, Genomes and Variation.Conditions of access:The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access:The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA helpdesk provides training when needed.Review:All individuals access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek (flicek@ebi.ac.uk).Authorized Data Access Committee user:Dr. A. W. SchreiberACRF Cancer Genomics Facility, Centre for Cancer BiologySA PathologyFrome Road, Adelaide SA 5000Australiaandreas.schreiber@adelaide.edu.auSignature of authorized user indicating that this policy has been read and understood.Supervisor of Authorized user:Prof Hamish S. Scott , BSc (Hons), PhD, FFSc (RCPA)Director, ACRF Cancer Genomics Facilityhamish.scott@health.sa.gov.auSignature supervisor of authorized user indicating that this policy has been read and understood

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003071 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002041152 fastq.gz 7.1 GB
EGAF00002041153 fastq.gz 7.1 GB
EGAF00002041154 fastq.gz 5.8 GB
EGAF00002041155 fastq.gz 6.1 GB
EGAF00002041156 fastq.gz 9.7 GB
EGAF00002041157 fastq.gz 9.6 GB
EGAF00002041158 fastq.gz 10.6 GB
EGAF00002041159 fastq.gz 10.7 GB
EGAF00002041160 fastq.gz 7.2 GB
EGAF00002041161 fastq.gz 7.2 GB
EGAF00002041162 fastq.gz 7.1 GB
EGAF00002041163 fastq.gz 7.4 GB
EGAF00002041164 fastq.gz 7.7 GB
EGAF00002041165 fastq.gz 7.8 GB
EGAF00002041166 fastq.gz 9.3 GB
EGAF00002041167 fastq.gz 9.4 GB
EGAF00002041168 fastq.gz 6.2 GB
EGAF00002041169 fastq.gz 6.1 GB
EGAF00002041170 fastq.gz 5.8 GB
EGAF00002041171 fastq.gz 5.8 GB
EGAF00002041172 fastq.gz 8.6 GB
EGAF00002041173 fastq.gz 8.9 GB
EGAF00002041174 fastq.gz 5.7 GB
EGAF00002041175 fastq.gz 5.8 GB
EGAF00002041176 fastq.gz 6.5 GB
EGAF00002041177 fastq.gz 6.5 GB
EGAF00002041178 fastq.gz 8.1 GB
EGAF00002041179 fastq.gz 8.2 GB
EGAF00002041180 fastq.gz 5.0 GB
EGAF00002041181 fastq.gz 5.2 GB
EGAF00002041182 fastq.gz 6.7 GB
EGAF00002041183 fastq.gz 6.7 GB
EGAF00002041184 fastq.gz 7.2 GB
EGAF00002041185 fastq.gz 7.3 GB
EGAF00002041186 fastq.gz 8.3 GB
EGAF00002041187 fastq.gz 8.1 GB
EGAF00002041188 fastq.gz 8.5 GB
EGAF00002041189 fastq.gz 8.2 GB
EGAF00002041190 fastq.gz 5.7 GB
EGAF00002041191 fastq.gz 5.7 GB
EGAF00002041192 fastq.gz 7.0 GB
EGAF00002041193 fastq.gz 6.8 GB
EGAF00002041194 fastq.gz 15.2 GB
EGAF00002041195 fastq.gz 15.6 GB
EGAF00002041196 fastq.gz 5.1 GB
EGAF00002041197 fastq.gz 5.1 GB
EGAF00002041198 fastq.gz 8.5 GB
EGAF00002041199 fastq.gz 8.5 GB
EGAF00002041200 fastq.gz 7.1 GB
EGAF00002041201 fastq.gz 7.4 GB
EGAF00002041202 fastq.gz 7.3 GB
EGAF00002041203 fastq.gz 7.3 GB
EGAF00002041204 fastq.gz 6.1 GB
EGAF00002041205 fastq.gz 6.3 GB
EGAF00002041206 fastq.gz 5.7 GB
EGAF00002041207 fastq.gz 5.6 GB
EGAF00002041208 fastq.gz 5.8 GB
EGAF00002041209 fastq.gz 5.8 GB
EGAF00002041210 fastq.gz 8.2 GB
EGAF00002041211 fastq.gz 8.5 GB
EGAF00002041212 fastq.gz 5.6 GB
EGAF00002041213 fastq.gz 5.6 GB
EGAF00002041214 fastq.gz 8.9 GB
EGAF00002041215 fastq.gz 8.7 GB
EGAF00002041216 fastq.gz 9.2 GB
EGAF00002041217 fastq.gz 9.0 GB
EGAF00002041218 fastq.gz 8.6 GB
EGAF00002041219 fastq.gz 8.5 GB
EGAF00002041220 fastq.gz 4.3 GB
EGAF00002041221 fastq.gz 4.3 GB
EGAF00002041222 fastq.gz 8.2 GB
EGAF00002041223 fastq.gz 8.3 GB
EGAF00002041224 fastq.gz 7.0 GB
EGAF00002041225 fastq.gz 7.0 GB
EGAF00002041226 fastq.gz 6.9 GB
EGAF00002041227 fastq.gz 6.9 GB
EGAF00002041228 fastq.gz 7.7 GB
EGAF00002041229 fastq.gz 7.6 GB
EGAF00002041230 fastq.gz 8.4 GB
EGAF00002041231 fastq.gz 8.6 GB
EGAF00002041232 fastq.gz 7.7 GB
EGAF00002041233 fastq.gz 7.6 GB
EGAF00002041234 fastq.gz 5.6 GB
EGAF00002041235 fastq.gz 5.6 GB
EGAF00002041236 fastq.gz 4.7 GB
EGAF00002041237 fastq.gz 4.7 GB
EGAF00002041238 fastq.gz 4.5 GB
EGAF00002041239 fastq.gz 4.5 GB
EGAF00002041240 fastq.gz 6.4 GB
EGAF00002041241 fastq.gz 6.4 GB
EGAF00002041242 fastq.gz 6.4 GB
EGAF00002041243 fastq.gz 6.3 GB
EGAF00002041244 fastq.gz 7.1 GB
EGAF00002041245 fastq.gz 7.0 GB
EGAF00002041246 fastq.gz 6.7 GB
EGAF00002041247 fastq.gz 6.6 GB
EGAF00002041248 fastq.gz 6.7 GB
EGAF00002041249 fastq.gz 6.6 GB
EGAF00002041250 fastq.gz 9.8 GB
EGAF00002041251 fastq.gz 9.6 GB
EGAF00002041252 fastq.gz 6.6 GB
EGAF00002041253 fastq.gz 6.8 GB
EGAF00002041254 fastq.gz 8.8 GB
EGAF00002041255 fastq.gz 8.6 GB
EGAF00002041256 fastq.gz 7.0 GB
EGAF00002041257 fastq.gz 6.9 GB
EGAF00002041258 fastq.gz 8.1 GB
EGAF00002041259 fastq.gz 8.0 GB
EGAF00002041260 fastq.gz 7.6 GB
EGAF00002041261 fastq.gz 7.5 GB
EGAF00002041262 fastq.gz 7.8 GB
EGAF00002041263 fastq.gz 7.7 GB
EGAF00002041264 fastq.gz 6.8 GB
EGAF00002041265 fastq.gz 6.8 GB
EGAF00002041266 fastq.gz 6.1 GB
EGAF00002041267 fastq.gz 6.1 GB
EGAF00002041268 fastq.gz 4.8 GB
EGAF00002041269 fastq.gz 4.8 GB
EGAF00002041270 fastq.gz 5.1 GB
EGAF00002041271 fastq.gz 5.1 GB
EGAF00002041272 fastq.gz 7.4 GB
EGAF00002041273 fastq.gz 7.4 GB
EGAF00002041274 fastq.gz 8.0 GB
EGAF00002041275 fastq.gz 8.0 GB
EGAF00002041276 fastq.gz 8.4 GB
EGAF00002041277 fastq.gz 8.3 GB
EGAF00002041278 fastq.gz 7.7 GB
EGAF00002041279 fastq.gz 7.6 GB
EGAF00002041280 fastq.gz 10.0 GB
EGAF00002041281 fastq.gz 10.0 GB
EGAF00002041282 fastq.gz 4.8 GB
EGAF00002041283 fastq.gz 4.8 GB
EGAF00002041284 fastq.gz 4.5 GB
EGAF00002041285 fastq.gz 4.5 GB
EGAF00002041286 fastq.gz 9.4 GB
EGAF00002041287 fastq.gz 9.5 GB
EGAF00002041288 fastq.gz 5.7 GB
EGAF00002041289 fastq.gz 5.7 GB
EGAF00002041290 fastq.gz 7.1 GB
EGAF00002041291 fastq.gz 7.3 GB
EGAF00002041292 fastq.gz 6.7 GB
EGAF00002041293 fastq.gz 6.7 GB
EGAF00002041294 fastq.gz 5.8 GB
EGAF00002041295 fastq.gz 5.8 GB
EGAF00002041296 fastq.gz 9.6 GB
EGAF00002041297 fastq.gz 9.4 GB
EGAF00002041298 fastq.gz 8.8 GB
EGAF00002041299 fastq.gz 8.8 GB
EGAF00002041300 fastq.gz 25.5 GB
EGAF00002041301 fastq.gz 25.7 GB
EGAF00002041302 fastq.gz 7.2 GB
EGAF00002041303 fastq.gz 7.4 GB
EGAF00002041304 fastq.gz 9.2 GB
EGAF00002041305 fastq.gz 9.2 GB
EGAF00002041306 fastq.gz 8.2 GB
EGAF00002041307 fastq.gz 8.1 GB
EGAF00002041308 fastq.gz 9.4 GB
EGAF00002041309 fastq.gz 9.2 GB
EGAF00002041310 fastq.gz 10.5 GB
EGAF00002041311 fastq.gz 10.5 GB
EGAF00002041312 fastq.gz 10.6 GB
EGAF00002041313 fastq.gz 10.6 GB
EGAF00002041314 fastq.gz 5.2 GB
EGAF00002041315 fastq.gz 5.1 GB
EGAF00002041316 fastq.gz 7.2 GB
EGAF00002041317 fastq.gz 7.2 GB
EGAF00002041318 fastq.gz 5.7 GB
EGAF00002041319 fastq.gz 5.8 GB
EGAF00002041320 fastq.gz 9.9 GB
EGAF00002041321 fastq.gz 10.0 GB
EGAF00002041322 fastq.gz 7.3 GB
EGAF00002041323 fastq.gz 7.2 GB
EGAF00002041324 fastq.gz 7.4 GB
EGAF00002041325 fastq.gz 7.3 GB
EGAF00002041326 fastq.gz 7.3 GB
EGAF00002041327 fastq.gz 7.4 GB
EGAF00002041328 fastq.gz 7.7 GB
EGAF00002041329 fastq.gz 7.4 GB
EGAF00002041330 fastq.gz 12.6 GB
EGAF00002041331 fastq.gz 12.1 GB
EGAF00002041332 fastq.gz 6.1 GB
EGAF00002041333 fastq.gz 5.8 GB
EGAF00002041334 fastq.gz 7.6 GB
EGAF00002041335 fastq.gz 7.9 GB
EGAF00002041336 fastq.gz 8.5 GB
EGAF00002041337 fastq.gz 8.6 GB
EGAF00002041338 fastq.gz 12.9 GB
EGAF00002041339 fastq.gz 13.1 GB
EGAF00002041340 fastq.gz 8.0 GB
EGAF00002041341 fastq.gz 8.0 GB
EGAF00002041342 fastq.gz 10.9 GB
EGAF00002041343 fastq.gz 11.0 GB
EGAF00002041344 fastq.gz 8.0 GB
EGAF00002041345 fastq.gz 7.8 GB
EGAF00002041346 fastq.gz 10.1 GB
EGAF00002041347 fastq.gz 10.1 GB
EGAF00002041348 fastq.gz 10.1 GB
EGAF00002041349 fastq.gz 10.1 GB
EGAF00002041350 fastq.gz 7.5 GB
EGAF00002041351 fastq.gz 7.8 GB
EGAF00002041352 fastq.gz 8.0 GB
EGAF00002041353 fastq.gz 8.1 GB
EGAF00002041354 fastq.gz 6.2 GB
EGAF00002041355 fastq.gz 6.2 GB
EGAF00002041356 fastq.gz 5.5 GB
EGAF00002041357 fastq.gz 5.6 GB
EGAF00002041358 fastq.gz 7.0 GB
EGAF00002041359 fastq.gz 6.8 GB
EGAF00002041360 fastq.gz 8.5 GB
EGAF00002041361 fastq.gz 8.2 GB
EGAF00002041362 fastq.gz 4.2 GB
EGAF00002041363 fastq.gz 4.2 GB
EGAF00002041364 fastq.gz 16.4 GB
EGAF00002041365 fastq.gz 16.3 GB
EGAF00002041366 fastq.gz 8.6 GB
EGAF00002041367 fastq.gz 8.6 GB
EGAF00002041368 fastq.gz 6.8 GB
EGAF00002041369 fastq.gz 6.9 GB
EGAF00002041370 fastq.gz 8.9 GB
EGAF00002041371 fastq.gz 8.9 GB
EGAF00002041372 fastq.gz 8.1 GB
EGAF00002041373 fastq.gz 8.1 GB
EGAF00002041374 fastq.gz 7.4 GB
EGAF00002041375 fastq.gz 7.5 GB
EGAF00002041376 fastq.gz 10.6 GB
EGAF00002041377 fastq.gz 10.5 GB
EGAF00002041378 fastq.gz 8.9 GB
EGAF00002041379 fastq.gz 8.9 GB
EGAF00002041380 fastq.gz 7.3 GB
EGAF00002041381 fastq.gz 7.3 GB
EGAF00002041382 fastq.gz 9.9 GB
EGAF00002041383 fastq.gz 9.9 GB
EGAF00002041384 fastq.gz 8.0 GB
EGAF00002041385 fastq.gz 8.0 GB
EGAF00002041386 fastq.gz 10.6 GB
EGAF00002041387 fastq.gz 10.6 GB
EGAF00002041388 fastq.gz 9.6 GB
EGAF00002041389 fastq.gz 9.7 GB
EGAF00002041390 fastq.gz 6.0 GB
EGAF00002041391 fastq.gz 6.2 GB
EGAF00002041392 fastq.gz 10.0 GB
EGAF00002041393 fastq.gz 10.2 GB
EGAF00002041394 fastq.gz 13.0 GB
EGAF00002041395 fastq.gz 12.9 GB
EGAF00002041396 fastq.gz 11.7 GB
EGAF00002041397 fastq.gz 11.6 GB
EGAF00002041398 fastq.gz 12.4 GB
EGAF00002041399 fastq.gz 12.3 GB
EGAF00002041400 fastq.gz 5.8 GB
EGAF00002041401 fastq.gz 5.8 GB
EGAF00002041402 fastq.gz 9.3 GB
EGAF00002041403 fastq.gz 9.2 GB
EGAF00002041404 fastq.gz 7.4 GB
EGAF00002041405 fastq.gz 7.5 GB
EGAF00002041406 fastq.gz 6.2 GB
EGAF00002041407 fastq.gz 6.5 GB
EGAF00002041408 fastq.gz 6.9 GB
EGAF00002041409 fastq.gz 7.1 GB
EGAF00002041410 fastq.gz 7.2 GB
EGAF00002041411 fastq.gz 7.5 GB
EGAF00002041412 fastq.gz 6.3 GB
EGAF00002041413 fastq.gz 6.5 GB
EGAF00002041414 fastq.gz 6.4 GB
EGAF00002041415 fastq.gz 6.7 GB
EGAF00002041416 fastq.gz 7.1 GB
EGAF00002041417 fastq.gz 7.4 GB
EGAF00002041418 fastq.gz 6.7 GB
EGAF00002041419 fastq.gz 6.9 GB
EGAF00002041420 fastq.gz 7.4 GB
EGAF00002041421 fastq.gz 7.5 GB
EGAF00002041422 fastq.gz 8.0 GB
EGAF00002041423 fastq.gz 8.2 GB
EGAF00002041424 fastq.gz 6.6 GB
EGAF00002041425 fastq.gz 6.7 GB
EGAF00002041426 fastq.gz 8.2 GB
EGAF00002041427 fastq.gz 8.4 GB
EGAF00002041428 fastq.gz 8.7 GB
EGAF00002041429 fastq.gz 8.9 GB
EGAF00002041430 fastq.gz 5.6 GB
EGAF00002041431 fastq.gz 5.4 GB
EGAF00002041432 fastq.gz 8.3 GB
EGAF00002041433 fastq.gz 8.5 GB
EGAF00002041434 fastq.gz 9.1 GB
EGAF00002041435 fastq.gz 9.4 GB
EGAF00002041436 fastq.gz 17.5 GB
EGAF00002041437 fastq.gz 17.6 GB
EGAF00002041438 fastq.gz 6.2 GB
EGAF00002041439 fastq.gz 6.2 GB
EGAF00002041440 fastq.gz 7.0 GB
EGAF00002041441 fastq.gz 6.9 GB
EGAF00002041442 fastq.gz 8.6 GB
EGAF00002041443 fastq.gz 8.7 GB
EGAF00002041444 fastq.gz 9.7 GB
EGAF00002041445 fastq.gz 9.9 GB
EGAF00002041446 fastq.gz 8.1 GB
EGAF00002041447 fastq.gz 8.3 GB
EGAF00002041448 fastq.gz 5.1 GB
EGAF00002041449 fastq.gz 5.1 GB
EGAF00002041450 fastq.gz 3.7 GB
EGAF00002041451 fastq.gz 3.8 GB
EGAF00002041452 fastq.gz 8.1 GB
EGAF00002041453 fastq.gz 8.3 GB
EGAF00002041454 fastq.gz 8.2 GB
EGAF00002041455 fastq.gz 8.4 GB
EGAF00002041456 fastq.gz 7.9 GB
EGAF00002041457 fastq.gz 8.1 GB
EGAF00002041458 fastq.gz 8.0 GB
EGAF00002041459 fastq.gz 8.2 GB
EGAF00002041460 fastq.gz 8.4 GB
EGAF00002041461 fastq.gz 8.6 GB
EGAF00002041462 fastq.gz 8.1 GB
EGAF00002041463 fastq.gz 8.2 GB
EGAF00002041464 fastq.gz 7.5 GB
EGAF00002041465 fastq.gz 7.7 GB
EGAF00002041466 fastq.gz 9.7 GB
EGAF00002041467 fastq.gz 9.9 GB
EGAF00002041468 fastq.gz 14.7 GB
EGAF00002041469 fastq.gz 14.9 GB
EGAF00002041470 fastq.gz 8.5 GB
EGAF00002041471 fastq.gz 8.5 GB
EGAF00002041472 fastq.gz 8.5 GB
EGAF00002041473 fastq.gz 8.5 GB
EGAF00002041474 fastq.gz 4.8 GB
EGAF00002041475 fastq.gz 4.9 GB
EGAF00002041476 fastq.gz 8.4 GB
EGAF00002041477 fastq.gz 8.4 GB
EGAF00002041478 fastq.gz 6.2 GB
EGAF00002041479 fastq.gz 6.4 GB
EGAF00002041480 fastq.gz 8.4 GB
EGAF00002041481 fastq.gz 8.6 GB
EGAF00002041482 fastq.gz 11.2 GB
EGAF00002041483 fastq.gz 11.4 GB
EGAF00002041484 fastq.gz 8.8 GB
EGAF00002041485 fastq.gz 9.0 GB
EGAF00002041486 fastq.gz 7.5 GB
EGAF00002041487 fastq.gz 7.4 GB
EGAF00002041488 fastq.gz 13.4 GB
EGAF00002041489 fastq.gz 13.5 GB
EGAF00002041490 fastq.gz 9.7 GB
EGAF00002041491 fastq.gz 9.8 GB
EGAF00002041492 fastq.gz 10.9 GB
EGAF00002041493 fastq.gz 10.9 GB
EGAF00002041494 fastq.gz 6.4 GB
EGAF00002041495 fastq.gz 6.6 GB
EGAF00002041496 fastq.gz 9.4 GB
EGAF00002041497 fastq.gz 9.4 GB
EGAF00002041498 fastq.gz 7.9 GB
EGAF00002041499 fastq.gz 8.0 GB
EGAF00002041500 fastq.gz 10.4 GB
EGAF00002041501 fastq.gz 10.4 GB
EGAF00002041502 fastq.gz 6.8 GB
EGAF00002041503 fastq.gz 6.8 GB
EGAF00002041504 fastq.gz 8.6 GB
EGAF00002041505 fastq.gz 8.7 GB
EGAF00002041506 fastq.gz 14.2 GB
EGAF00002041507 fastq.gz 14.2 GB
EGAF00002041508 fastq.gz 14.0 GB
EGAF00002041509 fastq.gz 14.0 GB
EGAF00002041510 fastq.gz 11.0 GB
EGAF00002041511 fastq.gz 10.9 GB
EGAF00002041512 fastq.gz 5.5 GB
EGAF00002041513 fastq.gz 5.6 GB
EGAF00002041514 fastq.gz 13.1 GB
EGAF00002041515 fastq.gz 13.0 GB
EGAF00002041516 fastq.gz 11.0 GB
EGAF00002041517 fastq.gz 11.0 GB
366 Files (3.0 TB)