Targeted sequencing of 72 prostate cancer driver in 712 plasma cell free DNA samples

Dataset contains targeted sequencing data of 712 plasma cell free DNA samples and 428 white blood cell samples collected from 428 men with metastatic prostate cancer. Target capture was performed using a hydridization-based custom Roche SeqCap EZ Choice kit, designed to capture all exons of 72 prostate cancer driver genes. Cell free DNA was extracted from 10 mL blood samples. Libraries were sequenced using Illumina HiSeq 2500 or Illumina MiSeq instruments to a median coverage of 750x. 62% of samples had ctDNA fraction above 2% of total cfDNA. Note that "Dataset type" is erroneously listed as "Amplicon sequencing", because "Captured-based targeted sequencing" or "Hybridization-based targeted sequencing" were not available options in EGA at the time of submission.

19/07/2018
1140 samples
DAC: EGAC00001000962
Technology: Illumina HiSeq 2500

Access Policy1 Study Files

Metadata

Request Access

Data Access Policy for the DNA sequencing study included in the study "Frequent mutation of the FOXA1 untranslated region in prostate cancer"

A data access agreement (DAA), based on the example DAA provided by EGA, is to be filled out by the requester, and then by the data access committee (DAC) for the study "Frequent mutation of the FOXA1 untranslated region in prostate cancer".

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001003113	Frequent mutation of the FOXA1 untranslated region in prostate cancer	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00002049557	fq.gz	546.7 MB	Report
EGAF00002049558	fq.gz	662.9 MB	Report
EGAF00002049559	fq.gz	596.0 MB	Report
EGAF00002049560	fq.gz	608.9 MB	Report
EGAF00002049561	fq.gz	86.3 MB	Report
EGAF00002049562	fq.gz	100.5 MB	Report
EGAF00002049563	fq.gz	577.1 MB	Report
EGAF00002049564	fq.gz	679.7 MB	Report
EGAF00002049565	fq.gz	141.0 MB	Report
EGAF00002049566	fq.gz	165.8 MB	Report
EGAF00002049567	fq.gz	512.0 MB	Report
EGAF00002049568	fq.gz	621.9 MB	Report
EGAF00002049569	fq.gz	436.2 MB	Report
EGAF00002049570	fq.gz	446.0 MB	Report
EGAF00002049571	fq.gz	360.9 MB	Report
EGAF00002049572	fq.gz	367.9 MB	Report
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EGAF00002049574	fq.gz	111.2 MB	Report
EGAF00002049575	fq.gz	541.7 MB	Report
EGAF00002049576	fq.gz	661.6 MB	Report
EGAF00002049577	fq.gz	777.8 MB	Report
EGAF00002049578	fq.gz	798.4 MB	Report
EGAF00002049579	fq.gz	557.9 MB	Report
EGAF00002049580	fq.gz	569.0 MB	Report
EGAF00002049581	fq.gz	196.2 MB	Report
EGAF00002049582	fq.gz	228.9 MB	Report
EGAF00002049583	fq.gz	489.1 MB	Report
EGAF00002049584	fq.gz	565.9 MB	Report
EGAF00002049585	fq.gz	463.9 MB	Report
EGAF00002049586	fq.gz	480.7 MB	Report
EGAF00002049587	fq.gz	301.1 MB	Report
EGAF00002049588	fq.gz	345.4 MB	Report
EGAF00002049589	fq.gz	539.2 MB	Report
EGAF00002049590	fq.gz	630.0 MB	Report
EGAF00002049591	fq.gz	239.2 MB	Report
EGAF00002049592	fq.gz	278.8 MB	Report
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EGAF00002049595	fq.gz	478.9 MB	Report
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EGAF00002049616	fq.gz	173.4 MB	Report
EGAF00002049617	fq.gz	700.2 MB	Report
EGAF00002049618	fq.gz	723.4 MB	Report
EGAF00002049619	fq.gz	385.4 MB	Report
EGAF00002049620	fq.gz	389.6 MB	Report
EGAF00002049621	fq.gz	158.8 MB	Report
EGAF00002049622	fq.gz	193.9 MB	Report
EGAF00002049623	fq.gz	542.6 MB	Report
EGAF00002049624	fq.gz	559.2 MB	Report
EGAF00002049625	fq.gz	162.3 MB	Report
EGAF00002049626	fq.gz	184.9 MB	Report
EGAF00002049627	fq.gz	774.3 MB	Report
EGAF00002049628	fq.gz	797.0 MB	Report
EGAF00002049629	fq.gz	65.2 MB	Report
EGAF00002049630	fq.gz	74.5 MB	Report
EGAF00002049631	fq.gz	367.3 MB	Report
EGAF00002049632	fq.gz	374.9 MB	Report
EGAF00002049633	fq.gz	257.8 MB	Report
EGAF00002049634	fq.gz	262.9 MB	Report
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EGAF00002049636	fq.gz	393.2 MB	Report
EGAF00002049637	fq.gz	201.4 MB	Report
EGAF00002049638	fq.gz	204.3 MB	Report
EGAF00002049639	fq.gz	675.3 MB	Report
EGAF00002049640	fq.gz	684.2 MB	Report
EGAF00002049641	fq.gz	141.1 MB	Report
EGAF00002049642	fq.gz	152.2 MB	Report
EGAF00002049643	fq.gz	574.9 MB	Report
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EGAF00002049650	fq.gz	472.9 MB	Report
EGAF00002049651	fq.gz	518.2 MB	Report
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EGAF00002049656	fq.gz	723.9 MB	Report
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EGAF00002049665	fq.gz	401.1 MB	Report
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EGAF00002049671	fq.gz	373.3 MB	Report
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EGAF00002049679	fq.gz	289.3 MB	Report
EGAF00002049680	fq.gz	296.7 MB	Report
EGAF00002049681	fq.gz	344.7 MB	Report
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EGAF00002049683	fq.gz	258.0 MB	Report
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EGAF00002049686	fq.gz	511.1 MB	Report
EGAF00002049687	fq.gz	266.4 MB	Report
EGAF00002049688	fq.gz	271.4 MB	Report
EGAF00002049689	fq.gz	455.7 MB	Report
EGAF00002049690	fq.gz	508.7 MB	Report
EGAF00002049691	fq.gz	478.8 MB	Report
EGAF00002049692	fq.gz	483.6 MB	Report
EGAF00002049693	fq.gz	208.9 MB	Report
EGAF00002049694	fq.gz	234.1 MB	Report
EGAF00002049695	fq.gz	610.2 MB	Report
EGAF00002049696	fq.gz	721.7 MB	Report
EGAF00002049697	fq.gz	472.5 MB	Report
EGAF00002049698	fq.gz	558.6 MB	Report
EGAF00002049699	fq.gz	269.6 MB	Report
EGAF00002049700	fq.gz	321.8 MB	Report
EGAF00002049701	fq.gz	437.8 MB	Report
EGAF00002049702	fq.gz	445.1 MB	Report
EGAF00002049703	fq.gz	438.2 MB	Report
EGAF00002049704	fq.gz	452.9 MB	Report
EGAF00002049705	fq.gz	257.4 MB	Report
EGAF00002049706	fq.gz	260.0 MB	Report
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EGAF00002049715	fq.gz	507.8 MB	Report
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EGAF00002049717	fq.gz	284.0 MB	Report
EGAF00002049718	fq.gz	286.4 MB	Report
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EGAF00002049720	fq.gz	346.5 MB	Report
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EGAF00002049722	fq.gz	573.5 MB	Report
EGAF00002049723	fq.gz	499.4 MB	Report
EGAF00002049724	fq.gz	501.7 MB	Report
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EGAF00002049726	fq.gz	269.2 MB	Report
EGAF00002049727	fq.gz	398.3 MB	Report
EGAF00002049728	fq.gz	450.9 MB	Report
EGAF00002049729	fq.gz	275.5 MB	Report
EGAF00002049730	fq.gz	318.1 MB	Report
EGAF00002049731	fq.gz	528.4 MB	Report
EGAF00002049732	fq.gz	609.9 MB	Report
EGAF00002049733	fq.gz	309.2 MB	Report
EGAF00002049734	fq.gz	325.1 MB	Report
EGAF00002049735	fq.gz	440.7 MB	Report
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EGAF00002049738	fq.gz	287.9 MB	Report
EGAF00002049739	fq.gz	363.6 MB	Report
EGAF00002049740	fq.gz	408.5 MB	Report
EGAF00002049741	fq.gz	367.3 MB	Report
EGAF00002049742	fq.gz	374.2 MB	Report
EGAF00002049743	fq.gz	81.2 MB	Report
EGAF00002049744	fq.gz	92.7 MB	Report
EGAF00002049745	fq.gz	501.3 MB	Report
EGAF00002049746	fq.gz	554.8 MB	Report
EGAF00002049747	fq.gz	110.6 MB	Report
EGAF00002049748	fq.gz	127.6 MB	Report
EGAF00002049749	fq.gz	582.4 MB	Report
EGAF00002049750	fq.gz	668.8 MB	Report
EGAF00002049751	fq.gz	535.2 MB	Report
EGAF00002049752	fq.gz	549.4 MB	Report
EGAF00002049753	fq.gz	289.9 MB	Report
EGAF00002049754	fq.gz	334.5 MB	Report
EGAF00002049755	fq.gz	420.6 MB	Report
EGAF00002049756	fq.gz	492.5 MB	Report
EGAF00002049757	fq.gz	358.4 MB	Report
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EGAF00002049761	fq.gz	169.2 MB	Report
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EGAF00002049763	fq.gz	438.8 MB	Report
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EGAF00002049765	fq.gz	82.9 MB	Report
EGAF00002049766	fq.gz	94.0 MB	Report
EGAF00002049767	fq.gz	560.6 MB	Report
EGAF00002049768	fq.gz	570.6 MB	Report
EGAF00002049769	fq.gz	159.2 MB	Report
EGAF00002049770	fq.gz	182.9 MB	Report
EGAF00002049771	fq.gz	368.5 MB	Report
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EGAF00002049773	fq.gz	632.4 MB	Report
EGAF00002049774	fq.gz	698.4 MB	Report
EGAF00002049775	fq.gz	642.8 MB	Report
EGAF00002049776	fq.gz	718.2 MB	Report
EGAF00002049777	fq.gz	125.6 MB	Report
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EGAF00002049779	fq.gz	339.3 MB	Report
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EGAF00002049781	fq.gz	454.7 MB	Report
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EGAF00002049783	fq.gz	416.2 MB	Report
EGAF00002049784	fq.gz	378.3 MB	Report
EGAF00002049785	fq.gz	592.6 MB	Report
EGAF00002049786	fq.gz	599.1 MB	Report
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EGAF00002049788	fq.gz	140.1 MB	Report
EGAF00002049789	fq.gz	699.7 MB	Report
EGAF00002049790	fq.gz	728.1 MB	Report
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EGAF00002049811	fq.gz	337.7 MB	Report
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EGAF00002051471	fq.gz	327.4 MB	Report
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EGAF00002051522	fq.gz	540.3 MB	Report
EGAF00002051523	fq.gz	733.7 MB	Report
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EGAF00002051526	fq.gz	627.4 MB	Report
EGAF00002051527	fq.gz	859.2 MB	Report
EGAF00002051528	fq.gz	882.8 MB	Report
EGAF00002051529	fq.gz	160.6 MB	Report
EGAF00002051530	fq.gz	173.7 MB	Report
EGAF00002051531	fq.gz	611.3 MB	Report
EGAF00002051532	fq.gz	620.0 MB	Report
EGAF00002051533	fq.gz	565.7 MB	Report
EGAF00002051534	fq.gz	577.1 MB	Report
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EGAF00002051537	fq.gz	636.4 MB	Report
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EGAF00002051539	fq.gz	541.3 MB	Report
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EGAF00002051545	fq.gz	460.1 MB	Report
EGAF00002051546	fq.gz	477.6 MB	Report
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EGAF00002051554	fq.gz	569.3 MB	Report
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EGAF00002051563	fq.gz	581.5 MB	Report
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EGAF00002051569	fq.gz	729.8 MB	Report
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EGAF00002051571	fq.gz	375.1 MB	Report
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EGAF00002051588	fq.gz	724.0 MB	Report
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EGAF00002051709	fq.gz	787.1 MB	Report
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EGAF00002051722	fq.gz	619.4 MB	Report
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EGAF00002051727	fq.gz	194.7 MB	Report
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EGAF00002051738	fq.gz	649.7 MB	Report
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EGAF00002051744	fq.gz	565.8 MB	Report
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EGAF00002051761	fq.gz	624.9 MB	Report
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EGAF00002051772	fq.gz	229.9 MB	Report
EGAF00002051773	fq.gz	527.6 MB	Report
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EGAF00002051781	fq.gz	377.3 MB	Report
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EGAF00002051785	fq.gz	575.2 MB	Report
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EGAF00002051800	fq.gz	271.6 MB	Report
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EGAF00002051808	fq.gz	274.1 MB	Report
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EGAF00002051811	fq.gz	524.9 MB	Report
EGAF00002051812	fq.gz	529.1 MB	Report
EGAF00002051813	fq.gz	223.8 MB	Report
EGAF00002051814	fq.gz	225.7 MB	Report
EGAF00002051815	fq.gz	434.6 MB	Report
EGAF00002051816	fq.gz	440.8 MB	Report
EGAF00002051817	fq.gz	260.9 MB	Report
EGAF00002051818	fq.gz	274.0 MB	Report
EGAF00002051819	fq.gz	466.1 MB	Report
EGAF00002051820	fq.gz	469.5 MB	Report
EGAF00002051821	fq.gz	289.3 MB	Report
EGAF00002051822	fq.gz	295.3 MB	Report
EGAF00002051823	fq.gz	455.4 MB	Report
EGAF00002051824	fq.gz	464.1 MB	Report
EGAF00002051825	fq.gz	308.2 MB	Report
EGAF00002051826	fq.gz	312.5 MB	Report
EGAF00002051827	fq.gz	423.3 MB	Report
EGAF00002051828	fq.gz	428.3 MB	Report
EGAF00002051829	fq.gz	474.3 MB	Report
EGAF00002051830	fq.gz	478.5 MB	Report
EGAF00002051831	fq.gz	246.0 MB	Report
EGAF00002051832	fq.gz	251.0 MB	Report
EGAF00002051833	fq.gz	521.3 MB	Report
EGAF00002051834	fq.gz	525.6 MB	Report
EGAF00002051835	fq.gz	251.2 MB	Report
EGAF00002051836	fq.gz	251.9 MB	Report
2280 Files (937.5 GB)