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Targeted sequencing of head and neck squamous cell carcinomas

This dataset includes 112 head and neck tumour samples with matched normal (blood) samples sequenced using a custom hybrid capture panel.

Request Access

Access to data generated by UHN is made available by completing the data access agreement for review by the data access committee and will be granted to qualified investigators for appropriate use.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom the Data Access Committee (DAC) grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The Principal Investigator and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. University Health Network: The University Health Network (UHN) is the largest clinical and research hospital in Canada. UHN is affiliated with the University of Toronto and is a member of the Toronto Academic Health Science Network. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify the DAC within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify the DAC prior to any significant changes to the protocol for the Project. 14. The User Institution will notify the DAC as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The DAC may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of the province of Ontario and PHIPA. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for The Data Access Committee Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002979 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002055825 bam 1.3 GB
EGAF00002055826 bam 1.2 GB
EGAF00002055827 bam 1.4 GB
EGAF00002055828 bam 1.8 GB
EGAF00002055829 bam 1.7 GB
EGAF00002055830 bam 1.4 GB
EGAF00002055831 bam 1.4 GB
EGAF00002055832 bam 1.1 GB
EGAF00002055833 bam 1.7 GB
EGAF00002055834 bam 1.1 GB
EGAF00002055835 bam 1.5 GB
EGAF00002055836 bam 1.5 GB
EGAF00002055837 bam 1.5 GB
EGAF00002055838 bam 628.1 MB
EGAF00002055839 bam 1.1 GB
EGAF00002055840 bam 1.8 GB
EGAF00002055841 bam 1.3 GB
EGAF00002055842 bam 1.2 GB
EGAF00002055843 bam 1.2 GB
EGAF00002055844 bam 1.4 GB
EGAF00002055845 bam 953.9 MB
EGAF00002055846 bam 1.3 GB
EGAF00002055847 bam 1.4 GB
EGAF00002055848 bam 1.4 GB
EGAF00002055849 bam 420.5 MB
EGAF00002055850 bam 1.4 GB
EGAF00002055851 bam 1.3 GB
EGAF00002055852 bam 1.4 GB
EGAF00002055853 bam 620.0 MB
EGAF00002055854 bam 1.1 GB
EGAF00002055855 bam 961.7 MB
EGAF00002055856 bam 1.1 GB
EGAF00002055857 bam 1.3 GB
EGAF00002055858 bam 2.3 GB
EGAF00002055859 bam 497.3 MB
EGAF00002055860 bam 1.3 GB
EGAF00002055861 bam 816.1 MB
EGAF00002055862 bam 1.4 GB
EGAF00002055863 bam 1.4 GB
EGAF00002055864 bam 960.6 MB
EGAF00002055865 bam 1.2 GB
EGAF00002055866 bam 839.9 MB
EGAF00002055867 bam 1.2 GB
EGAF00002055868 bam 918.0 MB
EGAF00002055869 bam 1.1 GB
EGAF00002055870 bam 998.9 MB
EGAF00002055871 bam 1.1 GB
EGAF00002055872 bam 1.2 GB
EGAF00002055873 bam 1.9 GB
EGAF00002055874 bam 1.5 GB
EGAF00002055875 bam 974.2 MB
EGAF00002055876 bam 1.5 GB
EGAF00002055877 bam 1.2 GB
EGAF00002055878 bam 1.1 GB
EGAF00002055879 bam 1.1 GB
EGAF00002055880 bam 1.5 GB
EGAF00002055881 bam 1.3 GB
EGAF00002055882 bam 1.2 GB
EGAF00002055883 bam 1.3 GB
EGAF00002055884 bam 973.1 MB
EGAF00002055885 bam 902.1 MB
EGAF00002055886 bam 1.1 GB
EGAF00002055887 bam 1.4 GB
EGAF00002055888 bam 1.1 GB
EGAF00002055889 bam 1.2 GB
EGAF00002055890 bam 1.0 GB
EGAF00002055891 bam 1.3 GB
EGAF00002055892 bam 1.1 GB
EGAF00002055893 bam 1.3 GB
EGAF00002055894 bam 1.3 GB
EGAF00002055895 bam 1.4 GB
EGAF00002055896 bam 1.2 GB
EGAF00002055897 bam 908.5 MB
EGAF00002055898 bam 836.9 MB
EGAF00002055899 bam 1.5 GB
EGAF00002055900 bam 820.1 MB
EGAF00002055901 bam 868.1 MB
EGAF00002055902 bam 1.3 GB
EGAF00002055903 bam 1.6 GB
EGAF00002055904 bam 1.4 GB
EGAF00002055905 bam 1.0 GB
EGAF00002055906 bam 589.4 MB
EGAF00002055907 bam 1.1 GB
EGAF00002055908 bam 1.3 GB
EGAF00002055909 bam 1.3 GB
EGAF00002055910 bam 1.3 GB
EGAF00002055911 bam 1.4 GB
EGAF00002055912 bam 1.4 GB
EGAF00002055913 bam 1.3 GB
EGAF00002055914 bam 1.2 GB
EGAF00002055915 bam 1.3 GB
EGAF00002055916 bam 1.1 GB
EGAF00002055917 bam 1.6 GB
EGAF00002055918 bam 1.2 GB
EGAF00002055919 bam 1.3 GB
EGAF00002055920 bam 1.4 GB
EGAF00002055921 bam 1.2 GB
EGAF00002055922 bam 1.2 GB
EGAF00002055923 bam 1.3 GB
EGAF00002055924 bam 1.2 GB
EGAF00002055925 bam 1.1 GB
EGAF00002055926 bam 1.2 GB
EGAF00002055927 bam 1.2 GB
EGAF00002055928 bam 1.4 GB
EGAF00002055929 bam 1.2 GB
EGAF00002055930 bam 1.2 GB
EGAF00002055931 bam 1.2 GB
EGAF00002055932 bam 1.3 GB
EGAF00002055933 bam 1.3 GB
EGAF00002055934 bam 1.1 GB
EGAF00002055935 bam 1.5 GB
EGAF00002055936 bam 1.4 GB
EGAF00002055937 bam 1.2 GB
EGAF00002055938 bam 907.3 MB
EGAF00002055939 bam 1.2 GB
EGAF00002055940 bam 1.6 GB
EGAF00002055941 bam 1.6 GB
EGAF00002055942 bam 1.3 GB
EGAF00002055943 bam 1.5 GB
EGAF00002055944 bam 737.0 MB
EGAF00002055945 bam 1.4 GB
EGAF00002055946 bam 5.2 GB
EGAF00002055947 bam 1.3 GB
EGAF00002055948 bam 1.6 GB
EGAF00002055949 bam 1.7 GB
EGAF00002055950 bam 567.5 MB
EGAF00002055951 bam 1.6 GB
EGAF00002055952 bam 1.3 GB
EGAF00002055953 bam 1.2 GB
EGAF00002055954 bam 1.3 GB
EGAF00002055955 bam 1.4 GB
EGAF00002055956 bam 1.1 GB
EGAF00002055957 bam 1.0 GB
EGAF00002055958 bam 1.3 GB
EGAF00002055959 bam 1.3 GB
EGAF00002055960 bam 572.4 MB
EGAF00002055961 bam 651.2 MB
EGAF00002055962 bam 1.4 GB
EGAF00002055963 bam 1.4 GB
EGAF00002055964 bam 585.6 MB
EGAF00002055965 bam 265.9 MB
EGAF00002055966 bam 1.3 GB
EGAF00002055967 bam 1.7 GB
EGAF00002055968 bam 1.1 GB
EGAF00002055969 bam 1.1 GB
EGAF00002055970 bam 2.6 GB
EGAF00002055971 bam 590.3 MB
EGAF00002055972 bam 1.2 GB
EGAF00002055973 bam 955.5 MB
EGAF00002055974 bam 1.4 GB
EGAF00002055975 bam 1.1 GB
EGAF00002055976 bam 1.3 GB
EGAF00002055977 bam 1.3 GB
EGAF00002055978 bam 2.0 GB
EGAF00002055979 bam 962.2 MB
EGAF00002055980 bam 1.0 GB
EGAF00002055981 bam 1.2 GB
EGAF00002055982 bam 857.5 MB
EGAF00002055983 bam 1.1 GB
EGAF00002055984 bam 1.1 GB
EGAF00002055985 bam 1.8 GB
EGAF00002055986 bam 819.4 MB
EGAF00002055987 bam 844.1 MB
EGAF00002055988 bam 1.3 GB
EGAF00002055989 bam 1.1 GB
EGAF00002055990 bam 1.1 GB
EGAF00002055991 bam 1.0 GB
EGAF00002055992 bam 1.1 GB
EGAF00002055993 bam 1.1 GB
EGAF00002055994 bam 1.1 GB
EGAF00002055995 bam 1.0 GB
EGAF00002055996 bam 1.2 GB
EGAF00002055997 bam 848.1 MB
EGAF00002055998 bam 1.2 GB
EGAF00002055999 bam 1.1 GB
EGAF00002056000 bam 1.4 GB
EGAF00002056001 bam 851.2 MB
EGAF00002056002 bam 937.7 MB
EGAF00002056003 bam 1.3 GB
EGAF00002056004 bam 1.2 GB
EGAF00002056005 bam 1.2 GB
EGAF00002056006 bam 1.2 GB
EGAF00002056007 bam 1.3 GB
EGAF00002056008 bam 1.2 GB
EGAF00002056009 bam 1.1 GB
EGAF00002056010 bam 1.4 GB
EGAF00002056011 bam 1.0 GB
EGAF00002056012 bam 676.5 MB
EGAF00002056013 bam 1.4 GB
EGAF00002056014 bam 1.1 GB
EGAF00002056015 bam 1.4 GB
EGAF00002056016 bam 1.2 GB
EGAF00002056017 bam 1.2 GB
EGAF00002056018 bam 1.1 GB
EGAF00002056019 bam 1.1 GB
EGAF00002056020 bam 1.5 GB
EGAF00002056021 bam 1.2 GB
EGAF00002056022 bam 1.3 GB
EGAF00002056023 bam 1.2 GB
EGAF00002056024 bam 1.8 GB
EGAF00002056025 bam 1.3 GB
EGAF00002056026 bam 1.2 GB
EGAF00002056027 bam 1.2 GB
EGAF00002056028 bam 1.3 GB
EGAF00002056029 bam 1.9 GB
EGAF00002056030 bam 1.9 GB
EGAF00002056031 bam 1.3 GB
EGAF00002056032 bam 1.2 GB
EGAF00002056033 bam 1.4 GB
EGAF00002056034 bam 1.4 GB
EGAF00002056035 bam 1.2 GB
EGAF00002056036 bam 968.2 MB
EGAF00002056037 bam 1.3 GB
EGAF00002056038 bam 1.3 GB
EGAF00002056039 bam 1.1 GB
EGAF00002056040 bam 1.5 GB
EGAF00002056041 bam 1.3 GB
EGAF00002056042 bam 1.2 GB
EGAF00002056043 bam 1.3 GB
EGAF00002056044 bam 1.2 GB
EGAF00002056045 bam 1.5 GB
EGAF00002056046 bam 1.1 GB
EGAF00002056047 bam 1.7 GB
EGAF00002056048 bam 1.2 GB
224 Files (279.2 GB)