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Human Embryonic Multi-tissue ChIP-seq (Manchester)

Histone ChIP-seq of 13 human embryonic tissues from weeks 6-8 of gestation. H3K4me3, H3K27me3 and H3K27ac. Biological replicates (n=2) for 11 tissues. Tissues (n): Brain (2); Retinal Pigmented Epithelium (eye)(2); Palate(2); Tongue (1); Left ventricle (heart)(2); Lung(2); Liver(2); Pancreas (2*); Stomach(1); Upper limb (2); Lower limb (2); Adrenal gland (2); Kidney (2)

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Data Access Aggreement for use of human embryonic multi-tissue ChIP-seq on histone modifications. The Hanley Lab, Faculty of Biology, Medicine and Health, University of Manchester, M13 9PT, United Kingdom.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom The Hanley Lab, University of Manchester grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: The Hanley Lab, University of Manchester and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. The Hanley Lab, University of Manchester, UK 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines ( ) and the Toronto Statement ( This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) ( ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) ( ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify The Hanley Lab, University of Manchester within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify The Hanley Lab, University of Manchester prior to any significant changes to the protocol for the Project. 14. The User Institution will notify The Hanley Lab, University of Manchester as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. The Hanley Lab, University of Manchester may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than The Hanley Lab, University of Manchester. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts. Agreed for User Institution Signature:   Name:   Title:   Date:   Principal Investigator I confirm that I have read and understood this Agreement. Signature:   Name:   Title:   Date:   Agreed for The Hanley Lab, University of Manchester Signature:   Name:   Title:   Date:   APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS (to be completed by the data producer before passing to applicant) Dataset reference (EGA Study ID and Dataset Details) TBC Name of project that created the dataset Multi-tissue embryonic ChIP-seq Names of other data producers/collaborators None Specific limitations on areas of research None Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY The Hanley Lab, University of Manchester intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. The Hanley Lab, University of Manchester anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 36 months after these data were first made available on the relevant hosting database, unless The Hanley Lab, University of Manchester has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with The Hanley Lab, University of Manchester.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003163 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002139530 fastq.gz 1.5 GB
EGAF00002139531 fastq.gz 1.5 GB
EGAF00002139532 fastq.gz 1.4 GB
EGAF00002139533 fastq.gz 1.6 GB
EGAF00002139534 fastq.gz 1.2 GB
EGAF00002139535 fastq.gz 1.1 GB
EGAF00002139536 fastq.gz 1.0 GB
EGAF00002139537 fastq.gz 1.1 GB
EGAF00002139538 fastq.gz 883.3 MB
EGAF00002139539 fastq.gz 3.7 GB
EGAF00002139540 fastq.gz 3.7 GB
EGAF00002139541 fastq.gz 1.4 GB
EGAF00002139542 fastq.gz 3.0 GB
EGAF00002139543 fastq.gz 3.0 GB
EGAF00002139544 fastq.gz 831.2 MB
EGAF00002139545 fastq.gz 2.4 GB
EGAF00002139546 fastq.gz 2.5 GB
EGAF00002139547 fastq.gz 3.8 GB
EGAF00002139548 fastq.gz 935.5 MB
EGAF00002139549 fastq.gz 1.0 GB
EGAF00002139550 fastq.gz 1.1 GB
EGAF00002139551 fastq.gz 972.2 MB
EGAF00002139552 fastq.gz 1.1 GB
EGAF00002139553 fastq.gz 1.5 GB
EGAF00002139554 fastq.gz 1.4 GB
EGAF00002139555 fastq.gz 808.2 MB
EGAF00002139556 fastq.gz 1.5 GB
EGAF00002139557 fastq.gz 1.1 GB
EGAF00002139558 fastq.gz 1.2 GB
EGAF00002139559 fastq.gz 1.2 GB
EGAF00002139560 fastq.gz 768.9 MB
EGAF00002139561 fastq.gz 960.3 MB
EGAF00002139562 fastq.gz 2.8 GB
EGAF00002139563 fastq.gz 2.8 GB
EGAF00002139564 fastq.gz 2.7 GB
EGAF00002139565 fastq.gz 2.8 GB
EGAF00002139566 fastq.gz 1.3 GB
EGAF00002139567 fastq.gz 1.0 GB
EGAF00002139568 fastq.gz 3.6 GB
EGAF00002139569 fastq.gz 3.6 GB
EGAF00002139570 fastq.gz 2.4 GB
EGAF00002139571 fastq.gz 2.4 GB
EGAF00002139572 fastq.gz 3.3 GB
EGAF00002139573 fastq.gz 3.4 GB
EGAF00002139574 fastq.gz 3.4 GB
EGAF00002139575 fastq.gz 3.4 GB
EGAF00002139576 fastq.gz 2.2 GB
EGAF00002139577 fastq.gz 2.3 GB
EGAF00002139578 fastq.gz 3.2 GB
EGAF00002139579 fastq.gz 3.2 GB
EGAF00002140033 fastq.gz 1.5 GB
EGAF00002140034 fastq.gz 1.5 GB
EGAF00002140035 fastq.gz 6.4 GB
EGAF00002140036 fastq.gz 6.6 GB
EGAF00002140037 fastq.gz 1.6 GB
EGAF00002140038 fastq.gz 1.6 GB
EGAF00002140039 fastq.gz 1.1 GB
EGAF00002140040 fastq.gz 1.1 GB
EGAF00002140041 fastq.gz 1.3 GB
EGAF00002140042 fastq.gz 1.4 GB
EGAF00002140043 fastq.gz 1.6 GB
EGAF00002140044 fastq.gz 1.2 GB
EGAF00002140045 fastq.gz 1.3 GB
EGAF00002140046 fastq.gz 700.4 MB
EGAF00002140047 fastq.gz 719.9 MB
EGAF00002140048 fastq.gz 1.5 GB
EGAF00002140049 fastq.gz 1.5 GB
EGAF00002140050 fastq.gz 1.5 GB
EGAF00002140051 fastq.gz 1.5 GB
EGAF00002140052 fastq.gz 1.1 GB
EGAF00002140053 fastq.gz 1.2 GB
EGAF00002140054 fastq.gz 2.4 GB
EGAF00002140055 fastq.gz 2.5 GB
EGAF00002140056 fastq.gz 1.4 GB
EGAF00002140057 fastq.gz 1.4 GB
EGAF00002140058 fastq.gz 1.7 GB
EGAF00002140059 fastq.gz 1.7 GB
EGAF00002140060 fastq.gz 1.5 GB
EGAF00002140061 fastq.gz 1.5 GB
EGAF00002140063 fastq.gz 3.5 GB
EGAF00002140064 fastq.gz 3.5 GB
EGAF00002140065 fastq.gz 3.2 GB
EGAF00002140066 fastq.gz 3.2 GB
EGAF00002140067 fastq.gz 1.2 GB
EGAF00002140068 fastq.gz 1.2 GB
EGAF00002140069 fastq.gz 1.2 GB
EGAF00002140070 fastq.gz 884.2 MB
EGAF00002140071 fastq.gz 906.7 MB
EGAF00002140072 fastq.gz 1.3 GB
EGAF00002140073 fastq.gz 1.3 GB
EGAF00002140074 fastq.gz 2.5 GB
EGAF00002140075 fastq.gz 2.6 GB
EGAF00002140076 fastq.gz 2.3 GB
EGAF00002140077 fastq.gz 2.4 GB
EGAF00002140078 fastq.gz 3.2 GB
EGAF00002140079 fastq.gz 3.2 GB
EGAF00002140080 fastq.gz 3.0 GB
EGAF00002140081 fastq.gz 3.0 GB
EGAF00002140082 fastq.gz 2.4 GB
EGAF00002140083 fastq.gz 2.5 GB
EGAF00002140084 fastq.gz 1.3 GB
EGAF00002140085 fastq.gz 1.3 GB
EGAF00002140086 fastq.gz 1.9 GB
EGAF00002140087 fastq.gz 2.0 GB
EGAF00002140088 fastq.gz 1.2 GB
EGAF00002140089 fastq.gz 1.2 GB
EGAF00002140090 fastq.gz 1.6 GB
EGAF00002140091 fastq.gz 1.6 GB
EGAF00002140092 fastq.gz 1.6 GB
EGAF00002140093 fastq.gz 1.4 GB
EGAF00002140094 fastq.gz 1.4 GB
EGAF00002140095 fastq.gz 3.2 GB
EGAF00002140096 fastq.gz 3.2 GB
EGAF00002140097 fastq.gz 1.5 GB
EGAF00002140098 fastq.gz 1.6 GB
EGAF00002140099 fastq.gz 2.0 GB
EGAF00002140100 fastq.gz 2.0 GB
EGAF00002140101 fastq.gz 1.5 GB
EGAF00002140102 fastq.gz 1.5 GB
EGAF00002140103 fastq.gz 1.0 GB
EGAF00002140104 fastq.gz 1.1 GB
EGAF00002140105 fastq.gz 2.3 GB
EGAF00002140106 fastq.gz 2.4 GB
EGAF00002140107 fastq.gz 1.2 GB
EGAF00002140108 fastq.gz 1.3 GB
EGAF00002142253 fastq.gz 1.3 GB
EGAF00002142254 fastq.gz 1.3 GB
127 Files (246.4 GB)