Need Help?

Multiple myeloma Total Therapy trial patient sequencing

DNA was obtained from either CD138+ cells from the bone marrow of multiple myeloma patients (tumor) or from stem cell harvests or peripheral blood cells from the same patient (control). 100 ng of DNA was fragmented, end-repaired, and adapters ligated using the HyperPlus kit (KAPA Biosystems). After PCR amplification the libraries were hybridized with probes against either a targeted panel consisting of 140 genes and chromosomal regions (Nimblegen) using SeqCap reagents (Nimblegen). Hybridized libraries underwent further amplification before being sequenced on a NextSeq500 (Illumina) using 75 bp paired end reads.

Request Access

UAMS - Deidentified Data Transfer Agreement 2016

Terms subject to change based on each transfer 2016 Data Transfer Agreement This Data Transfer Agreement (this "Agreement") is entered into effective as of the last signature date of this Agreement (“Effective Date”) by and between [company] ("Recipient"),and the Board of Trustees of the University of Arkansas acting for and on behalf of the University of Arkansas for Medical Sciences ("Provider") in order to document the transferof certain de-identified data, as defined below and the mutual covenants and promises hereinafter set forth as agreed to by Recipient and Provider. Provider and Recipient maybe referred to herein individually as a "Party" or collectively as the "Parties".WHEREAS, the Parties agree that this Agreement shall govern only the transfer of the Study Data, as defined herein, if the Parties agree in writing to same. 1. "Study Data" shall be defined to mean de-identified data collected under informed consent related to the research study entitled [please insert title]. 2. Provider certifies that the Study Data shall be provided in a de-identified fashion. Under no circumstances shall Provider provide Recipient with the name, address, social security number, or any other identifier which would permit Recipient to identify the research subjects from whom such Study Data was collected. The Recipient, through [recipient scientist name], certifies that they neither have nor will seek to obtain information from Provider that identifies or can be used to identify or link de-identified data to any research subject, and in the event that either receives any PHI, such PHI shall be kept confidential, not used or disclosed, and shall be immediately returned to Provider. 3. Subject to, and in accordance with terms set in this Agreement, Recipient shall use Study Data for the following research purposes only (and for no other purpose): [indicate purpose/research/reference number if applicable] 4. Recipient shall only disclose Study Data to Recipient’s employees who have a need to know and who are directly responsible for the activities related to the Purpose. The Recipient, through [recipient scientist name], who shall serve as the Principal Investigator of the research study utilizing the Study Data, will ensure that all such parties are informed of the terms and conditions under this Agreement. 5. Recipient shall not use or further disclose the Study Data other than as permitted or required by this Agreement or as otherwise required by law. Recipient shall report to Provider immediately within upon Recipient’s discovery of any unauthorized use or disclosure of the Study Data not provided for by this Agreement. Recipient shall provide the following information: (1) the nature of the use or disclosure; (2) the information used or disclosed; (3) who made the use or disclosure; and (4) what corrective action will be taken by Recipient as a result of the use or disclosure. Recipient shall take any other actions available to it to mitigate any detrimental effects of the use or disclosure. 6. Recipient and its employees shall not identify or attempt to identify the individual(s) to whom the Study Data pertains or contact or attempt to contact the individual(s) who Recipient believes to be the subject of any Study Data. The obligations set forth in this Section 6 shall survive the termination or expiration of this Agreement for any reason. 7. As principal investigator, [recipient scientist name] has agreed to provide any results gained from the analysis of the Study Data with Provider. Provider Institution shall maintain these results in confidence pending publication and/or presentation of the results of the analysis being conducted on the Study Data. However, if Recipient has not published within six (6) months of the completion of the Study at Recipient’s institution, Provider shall have the right to publish or present independently any results from its work at Provider’s institution. [this term will change to joint publication if that is what is agreed]. 8. Subject to Applicable Laws, none of Provider, Principal Investigator, or Recipient shall use the name, trademark, trade name or logo of the other in any publication, press release, or promotional material with respect to the Study without the prior written approval of the other party; provided, however, that Recipient shall have the right to identify Provider as the site at which the Study Data was generated and to identify those individuals responsible for conducting the Study. Provider retains the right to use Recipient’s name, and a non-confidential descriptor, on any and all funding applications it may seek in the future. 9. This Agreement may be terminated by either Party, for any reason, upon thirty (30) days' advance written notice to the other Party, and this Agreement may be terminated upon mutual written agreement signed by the authorized representatives of both of the Parties. Notwithstanding anything to the contrary, Recipient and [recipient scientist name] shall not use or disclose any information provided by Provider except in accordance with the terms of this Agreement and applicable law. This obligation shall extend in perpetuity. Recipient agrees that upon termination of this Agreement, Recipient shall, at its expense, (a) return or destroy all Study Data received from Provider and retain no copies of such Study Data. 10. Any notice required or permitted hereunder shall be in writing and shall be deemed given as of the date it is: (i) delivered by hand; (ii) received by registered or certified mail, postage prepaid, return receipt requested; (iii) confirmed as received if by facsimile; or (iv) received by nationally recognized, overnight courier, and addressed to the party to receive such notice at the address set forth below, or such other address as is subsequently specified in writing. If to Recipient: [ please provide ] If to Provider: University of Arkansas for Medical Sciences By Post: 4301 West Markham Drive, MS#860 Little Rock, AR 72205 By Courier: Ed II, 5th Floor, Suite 104 Little Rock, AR 72205 Attn: Sr. Research Contracts Attorney 11. Recipient and Provider shall not assign or transfer any rights or obligations hereunder, or any part hereof, without the prior written consent of the other Party. 12. Entire Agreement. This Agreement constitutes the entire agreement and understanding between the Parties and supersedes any prior or contemporaneous negotiations, agreements, understandings, or arrangements of any nature or kind with respect to the subject matter herein. 13. This Agreement may be executed simultaneously in any number of counterparts (including scanned copies of signature in portable document format “pdf” and delivered via electronic mail), each of which shall be deemed an original and all of which taken together shall constitute one and the same instrument. IN WITNESS WHEREOF, the parties have executed this Data Transfer Agreement as of the [Effective Date] Board of Trustees of the University of Arkansas [Name of Recpient] Acting For And On Behalf Of The University of Arkansas for Medical Sciences By: ___________________________________ By: ________________________ Name: Suzanne Alstadt Name: Title: Director, Office of Research and Title: Sponsored Programs Date: _________________________________ Date: ______________________ READ AND UNDERSTOOD BY PRINCIPAL INVESTIGATOR By: ________________________________ Date: _______________________________

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003223 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002195140 bam 6.6 GB Report
EGAF00002195141 bam 4.3 GB Report
EGAF00002195142 bam 4.9 GB Report
EGAF00002195143 bam 5.5 GB Report
EGAF00002195144 bam 6.2 GB Report
EGAF00002195145 bam 5.7 GB Report
EGAF00002195146 bam 4.1 GB Report
EGAF00002195147 bam 4.3 GB Report
EGAF00002195148 bam 4.3 GB Report
EGAF00002195149 bam 6.3 GB Report
EGAF00002195150 bam 6.2 GB Report
EGAF00002195151 bam 5.2 GB Report
EGAF00002195152 bam 4.0 GB Report
EGAF00002195153 bam 3.7 GB Report
EGAF00002195154 bam 5.7 GB Report
EGAF00002195155 bam 5.9 GB Report
EGAF00002195156 bam 5.6 GB Report
EGAF00002195157 bam 3.8 GB Report
EGAF00002195158 bam 7.2 GB Report
EGAF00002195159 bam 5.3 GB Report
EGAF00002195160 bam 7.1 GB Report
EGAF00002195161 bam 5.0 GB Report
EGAF00002195162 bam 5.3 GB Report
EGAF00002195163 bam 4.2 GB Report
EGAF00002195164 bam 3.0 GB Report
EGAF00002195165 bam 6.3 GB Report
EGAF00002195166 bam 4.5 GB Report
EGAF00002195167 bam 4.2 GB Report
EGAF00002195168 bam 5.1 GB Report
EGAF00002195169 bam 4.7 GB Report
EGAF00002195170 bam 5.9 GB Report
EGAF00002195171 bam 5.1 GB Report
EGAF00002195172 bam 4.5 GB Report
EGAF00002195173 bam 4.8 GB Report
EGAF00002195174 bam 6.6 GB Report
EGAF00002195175 bam 4.8 GB Report
EGAF00002195176 bam 5.6 GB Report
EGAF00002195177 bam 3.8 GB Report
EGAF00002195178 bam 5.0 GB Report
EGAF00002195179 bam 4.5 GB Report
EGAF00002195180 bam 4.8 GB Report
EGAF00002195181 bam 5.0 GB Report
EGAF00002195182 bam 4.1 GB Report
EGAF00002195183 bam 3.7 GB Report
EGAF00002195184 bam 4.5 GB Report
EGAF00002195185 bam 3.3 GB Report
EGAF00002195186 bam 4.5 GB Report
EGAF00002195187 bam 4.1 GB Report
EGAF00002195188 bam 4.9 GB Report
EGAF00002195189 bam 4.0 GB Report
EGAF00002195190 bam 3.9 GB Report
EGAF00002195191 bam 4.7 GB Report
EGAF00002195192 bam 4.1 GB Report
EGAF00002195193 bam 3.9 GB Report
EGAF00002195194 bam 6.0 GB Report
EGAF00002195195 bam 8.0 GB Report
EGAF00002195196 bam 5.1 GB Report
EGAF00002195197 bam 4.3 GB Report
EGAF00002195198 bam 5.0 GB Report
EGAF00002195199 bam 4.2 GB Report
EGAF00002195200 bam 2.2 GB Report
EGAF00002195201 bam 2.0 GB Report
EGAF00002195202 bam 4.1 GB Report
EGAF00002195203 bam 3.7 GB Report
EGAF00002195204 bam 6.0 GB Report
EGAF00002195205 bam 3.8 GB Report
EGAF00002195206 bam 4.4 GB Report
EGAF00002195207 bam 7.2 GB Report
EGAF00002195208 bam 4.6 GB Report
EGAF00002195209 bam 3.4 GB Report
EGAF00002195210 bam 5.8 GB Report
EGAF00002195211 bam 7.2 GB Report
EGAF00002195212 bam 4.9 GB Report
EGAF00002195213 bam 6.6 GB Report
EGAF00002195214 bam 4.8 GB Report
EGAF00002195215 bam 5.2 GB Report
EGAF00002195216 bam 4.3 GB Report
EGAF00002195217 bam 3.4 GB Report
EGAF00002195218 bam 5.9 GB Report
EGAF00002195219 bam 4.8 GB Report
EGAF00002195220 bam 4.1 GB Report
EGAF00002195221 bam 4.0 GB Report
EGAF00002195222 bam 4.8 GB Report
EGAF00002195223 bam 4.3 GB Report
EGAF00002195224 bam 5.3 GB Report
EGAF00002195225 bam 5.1 GB Report
EGAF00002195226 bam 5.5 GB Report
EGAF00002195227 bam 4.9 GB Report
EGAF00002195228 bam 1.5 GB Report
EGAF00002195229 bam 5.9 GB Report
EGAF00002195230 bam 7.2 GB Report
EGAF00002195231 bam 4.0 GB Report
EGAF00002195232 bam 2.1 GB Report
EGAF00002195233 bam 6.7 GB Report
EGAF00002195234 bam 5.8 GB Report
EGAF00002195235 bam 4.8 GB Report
EGAF00002195236 bam 5.0 GB Report
EGAF00002195237 bam 3.0 GB Report
EGAF00002195238 bam 4.7 GB Report
EGAF00002195239 bam 6.5 GB Report
EGAF00002195240 bam 5.5 GB Report
EGAF00002195241 bam 6.0 GB Report
EGAF00002195242 bam 5.9 GB Report
EGAF00002195243 bam 6.5 GB Report
EGAF00002195244 bam 5.8 GB Report
EGAF00002195245 bam 6.5 GB Report
EGAF00002195246 bam 6.8 GB Report
EGAF00002195247 bam 5.9 GB Report
EGAF00002195248 bam 5.1 GB Report
EGAF00002195249 bam 4.5 GB Report
EGAF00002195250 bam 5.1 GB Report
EGAF00002195251 bam 4.3 GB Report
EGAF00002195252 bam 4.8 GB Report
EGAF00002195253 bam 4.8 GB Report
EGAF00002195254 bam 5.6 GB Report
EGAF00002195255 bam 4.5 GB Report
EGAF00002195256 bam 5.4 GB Report
EGAF00002195257 bam 4.6 GB Report
EGAF00002195258 bam 5.1 GB Report
EGAF00002195259 bam 4.2 GB Report
EGAF00002195260 bam 4.2 GB Report
EGAF00002195261 bam 3.9 GB Report
EGAF00002195262 bam 4.5 GB Report
EGAF00002195263 bam 6.3 GB Report
EGAF00002195264 bam 3.9 GB Report
EGAF00002195265 bam 3.7 GB Report
EGAF00002195266 bam 2.3 GB Report
EGAF00002195267 bam 1.8 GB Report
EGAF00002195268 bam 4.5 GB Report
EGAF00002195269 bam 4.0 GB Report
EGAF00002195270 bam 4.5 GB Report
EGAF00002195271 bam 7.0 GB Report
EGAF00002195272 bam 2.4 GB Report
EGAF00002195273 bam 2.0 GB Report
EGAF00002195274 bam 4.8 GB Report
EGAF00002195275 bam 4.1 GB Report
EGAF00002195276 bam 2.3 GB Report
EGAF00002195277 bam 953.0 MB Report
EGAF00002195278 bam 1.4 GB Report
EGAF00002195279 bam 1.7 GB Report
EGAF00002195280 bam 2.3 GB Report
EGAF00002195281 bam 1.7 GB Report
EGAF00002195282 bam 1.7 GB Report
EGAF00002195283 bam 1.8 GB Report
EGAF00002195284 bam 3.5 GB Report
EGAF00002195285 bam 5.8 GB Report
EGAF00002195286 bam 2.2 GB Report
EGAF00002195287 bam 1.8 GB Report
EGAF00002195288 bam 2.5 GB Report
EGAF00002195289 bam 1.9 GB Report
EGAF00002195290 bam 4.6 GB Report
EGAF00002195291 bam 4.8 GB Report
EGAF00002195292 bam 2.1 GB Report
EGAF00002195293 bam 2.8 GB Report
EGAF00002195294 bam 2.4 GB Report
EGAF00002195295 bam 1.8 GB Report
EGAF00002195296 bam 1.4 GB Report
EGAF00002195297 bam 4.5 GB Report
EGAF00002195298 bam 5.7 GB Report
EGAF00002195299 bam 4.7 GB Report
EGAF00002195300 bam 4.1 GB Report
EGAF00002195301 bam 3.7 GB Report
EGAF00002195302 bam 6.3 GB Report
EGAF00002195303 bam 4.5 GB Report
EGAF00002195304 bam 4.3 GB Report
EGAF00002195305 bam 4.3 GB Report
EGAF00002195306 bam 5.9 GB Report
EGAF00002195307 bam 4.6 GB Report
EGAF00002195308 bam 5.5 GB Report
EGAF00002195309 bam 3.8 GB Report
EGAF00002195310 bam 6.1 GB Report
EGAF00002195311 bam 5.1 GB Report
EGAF00002195312 bam 5.7 GB Report
EGAF00002195313 bam 4.4 GB Report
EGAF00002195314 bam 5.6 GB Report
EGAF00002195315 bam 2.9 GB Report
EGAF00002195316 bam 6.4 GB Report
EGAF00002195317 bam 4.3 GB Report
EGAF00002195318 bam 4.4 GB Report
EGAF00002195319 bam 4.4 GB Report
EGAF00002195320 bam 6.0 GB Report
EGAF00002195321 bam 5.3 GB Report
EGAF00002195322 bam 6.1 GB Report
EGAF00002195323 bam 3.9 GB Report
EGAF00002195324 bam 5.1 GB Report
EGAF00002195325 bam 6.4 GB Report
EGAF00002195326 bam 7.1 GB Report
EGAF00002195327 bam 5.8 GB Report
EGAF00002195328 bam 4.2 GB Report
EGAF00002195329 bam 5.9 GB Report
EGAF00002195330 bam 3.1 GB Report
EGAF00002195331 bam 6.2 GB Report
EGAF00002195332 bam 4.3 GB Report
EGAF00002195333 bam 1.8 GB Report
EGAF00002195334 bam 1.7 GB Report
EGAF00002195335 bam 6.2 GB Report
EGAF00002195336 bam 4.8 GB Report
EGAF00002195337 bam 1.6 GB Report
EGAF00002195338 bam 1.6 GB Report
EGAF00002195339 bam 6.8 GB Report
EGAF00002195340 bam 5.7 GB Report
EGAF00002195341 bam 4.7 GB Report
EGAF00002195342 bam 4.0 GB Report
EGAF00002195343 bam 2.3 GB Report
EGAF00002195344 bam 2.0 GB Report
EGAF00002195345 bam 4.7 GB Report
EGAF00002195346 bam 4.7 GB Report
EGAF00002195347 bam 5.6 GB Report
EGAF00002195348 bam 6.6 GB Report
EGAF00002195349 bam 2.8 GB Report
EGAF00002195350 bam 6.7 GB Report
EGAF00002195351 bam 2.5 GB Report
EGAF00002195352 bam 6.3 GB Report
EGAF00002195353 bam 5.0 GB Report
EGAF00002195354 bam 4.4 GB Report
EGAF00002195355 bam 3.9 GB Report
EGAF00002195356 bam 8.6 GB Report
EGAF00002195357 bam 1.5 GB Report
EGAF00002195358 bam 1.6 GB Report
EGAF00002195359 bam 5.6 GB Report
EGAF00002195360 bam 4.6 GB Report
EGAF00002195361 bam 5.1 GB Report
EGAF00002195362 bam 4.0 GB Report
EGAF00002195363 bam 4.6 GB Report
EGAF00002195364 bam 4.8 GB Report
EGAF00002195365 bam 5.2 GB Report
EGAF00002195366 bam 4.5 GB Report
EGAF00002195367 bam 6.5 GB Report
EGAF00002195368 bam 5.8 GB Report
EGAF00002195369 bam 4.9 GB Report
EGAF00002195370 bam 5.0 GB Report
EGAF00002195371 bam 5.8 GB Report
EGAF00002195372 bam 5.9 GB Report
EGAF00002195373 bam 3.1 GB Report
EGAF00002195374 bam 4.2 GB Report
EGAF00002195375 bam 2.9 GB Report
EGAF00002195376 bam 6.9 GB Report
EGAF00002195377 bam 3.0 GB Report
EGAF00002195378 bam 4.2 GB Report
EGAF00002195379 bam 10.7 GB Report
EGAF00002195380 bam 5.9 GB Report
EGAF00002195381 bam 3.1 GB Report
EGAF00002195382 bam 4.4 GB Report
EGAF00002195383 bam 3.0 GB Report
EGAF00002195384 bam 1.8 GB Report
EGAF00002195385 bam 3.5 GB Report
EGAF00002195386 bam 4.2 GB Report
EGAF00002195387 bam 4.6 GB Report
EGAF00002195388 bam 6.9 GB Report
EGAF00002195389 bam 4.9 GB Report
EGAF00002195390 bam 6.4 GB Report
EGAF00002195391 bam 3.8 GB Report
EGAF00002195392 bam 8.5 GB Report
EGAF00002195393 bam 5.1 GB Report
EGAF00002195394 bam 8.2 GB Report
EGAF00002195395 bam 4.8 GB Report
EGAF00002195396 bam 8.1 GB Report
EGAF00002195397 bam 5.5 GB Report
EGAF00002195398 bam 8.8 GB Report
EGAF00002195399 bam 5.5 GB Report
EGAF00002195400 bam 8.4 GB Report
EGAF00002195401 bam 5.9 GB Report
EGAF00002195402 bam 5.3 GB Report
263 Files (1.2 TB)