Whole genome sequencing of metastatic cutaneous squamous cell carcinoma

Dataset ID Technology Samples
EGAD00001004530 N/A 13

Dataset Description

This dataset includes somatic small variant calling files derived from fifteen metastatic samples from cutaneous squamous cell carcinoma matched to normal blood samples. These samples were whole-genome sequenced by HiSeq X Ten and the resulting reads were mapped against the human genome (hg37) using BWA-MEM 0.7.10-r789. Somatic variant calling was then performed using strelka 1 (version 2.0.17).

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

HNSCI Data Access Committee
Contact person: Marie Ranson
Email: mranson [at] uow [dot] edu [dot] au
More details: EGAC00001001100


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