Comprehensive genetic analysis of uveal melanoma heterogeneity during metastatic progression
Uveal melanoma (UM) is the most common primary intraocular malignancy in adults. Despite improvement of diagnosis and treatment of the primary tumor, there is no effective treatment of metastatic disease and approximately half of patients will die within one year or less following metastases detection. Tumor heterogeneity has been proposed as a key factor of drug resistance. However, it has been scarcely studied in UM. The present project aims searching for specific drivers of the metastatic progression, describing the genomic and transcriptomic landscape of metastatic UM, exploring tumor heterogeneity and investigating its role in drug resistance. Thus whole exome sequencing and transcriptomics have been performed on constitutional, primary tumor and metastatic samples from 28 UM patients.
- 110 samples
- DAC: EGAC00001000670
- Technology: Illumina HiSeq 2500
RESEARCH DATA TRANSFER AND USE AGREEMENT
RESEARCH DATA TRANSFER AND USE AGREEMENT BETWEEN Institut Curie Foundation of public interest 26, rue d’Ulm – 75005 Paris Represented by Mr. Thierry Philip, President, and by delegation, by Mr. Amaury Martin, Director of technology transfer and industrial partnerships office, Hereinafter designated as "Institut Curie", ON THE ONE HAND, AND XXXX, …………… company, registered with the companies registry (RCS) in ………………, headquartered at …………………………, represented by ……………, …………………, Hereinafter designated as "User Institution", User Institution and Registered Users (as defined at Article 2) are hereafter collectively referred to as “User” ON THE OTHER HAND, Designated, collectively or not, as the "Party/Parties". The present agreement (“Agreement”) governs access to the managed access datasets (details of which are set out in Articles 1 and 2) to which the User has requested access. The User Institution agrees to be bound by the terms and conditions of the Agreement. ARTICLE 1 – INFORMATION RELATED TO THE DATA : Dataset reference (EGA Study ID and Dataset Details) EGA Study ID: EGAB00000001193 Dataset corresponds to the first genome wide association study carried out on 279 patients with uveal melanoma treated at Institut Curie and using the Illumina HumanOmni5. One file contains the genotype data (PED file) and the second one (MAP file) is an annotation file of the SNP. Name of project that created the Dataset UM_GWAS Names of Data producers/collaborators (if any) Marc-Henri Stern Lenha Mobuchon Aude Battistella Anne Boland Jean-François Deleuze Specific limitations on areas of research Genetics of uveal melanoma Minimum protection measures required In order to avoid inadvertent disclosure of EGA Controlled Data to unauthorized individuals, we ask that you observe basic information security practices. 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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
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EGAS00001002761 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.