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RNA sequencing of periprostatic fat after a 6 month deep androgen deprivation therapy

Androgen deprivation therapy treated patients (n=11) were recruited from an open label neoadjuvant phase II study in which patients with high-risk disease received a ‘supercastration’ regimen consisting of degarelix 240/80 mg subcutaneously every four weeks; abiraterone acetate 500 mg orally daily titrating upwards every two weeks by 250 mg to a final dose of 1000 mg daily; bicalutamide 50 mg orally daily; and prednisolone 5 mg orally twice daily for a total of 6 months (Australian New Zealand Clinical Trials Registry 12612000772842). Untreated patients with similar pre-treatment characteristics were obtained from a prospective prostatectomy biorepository22,23. Prior to ligation of the dorsal venous complex and prostate pedicles, the anterior prostate was defatted and the specimen was removed immediately, placed in a sterile container and transferred on ice for long-term storage in the vapour phase of liquid nitrogen. A total of 50–100 µg of adipose tissue was separated from fresh frozen samples stored at −160°C. RNA was isolated using the Qiagen RNeasy Lipid Tissue Mini Kit and eluted in 35 µL nuclease-free water. 0.5–1 µg of total RNA was used as the input for cDNA library synthesis using TruSeq RNA Sample Prep Kit v2 (Illumina), and libraries were constructed according to manufacturer’s instructions. Samples were sequenced on a HiSeq 2500 (Illumina) using 101 base paired-end chemistry, aiming for 50 million mapped paired-end reads per sample.

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Policy for periprostatic fat gene marker discovery

RECITALS A. The Recipient has requested certain Data from the University for the Purpose. B. The University has agreed to make the Data available on the terms and conditions set out in this Agreement. IT IS AGREED AS FOLLOWS 1. 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CONFIDENTIALITY 9.1 When receiving Confidential Information, the Receiving Party must: 9.1.1 keep all Confidential Information of the Disclosing Party confidential unless strictly required otherwise by law; 9.1.2 limit access to those of its employees or agents reasonably requiring the Confidential Information for the Purpose on a strictly need to know basis; 9.1.3 not use the Confidential Information in any way other than for the Purpose or as otherwise contemplated by this Agreement without the prior written permission of the Disclosing Party; 9.1.4 ensure that all employees, students or agents to whom the Confidential Information is disclosed are bound to keep the Confidential Information confidential and not to use the Confidential Information except for the Purpose; and 9.1.5 immediately notify the Disclosing Party of any disclosure required by law. 9.2 At any time upon the written request of the Disclosing Party, the Receiving Party must, at its own expense, promptly destroy or return to the Disclosing Party any documents which embody the Disclosing Party’s Confidential Information. The Receiving Party may retain: 9.2.1 one copy of the foregoing documents in a secure location for record-keeping purposes only; and 9.2.2 copies of the foregoing documents to the extent required by any applicable laws. The Receiving Party shall not be required to delete or destroy any electronic back-up tapes or other electronic back-up files that have been created solely by their automatic or routine archiving and back-up procedures, to the extent created and retained in a manner consistent with its or their standard archiving and back-up procedures 10. 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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003286 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002446908 fastq.gz 3.2 GB
EGAF00002446909 fastq.gz 3.3 GB
EGAF00002446910 fastq.gz 2.6 GB
EGAF00002446911 fastq.gz 2.7 GB
EGAF00002446912 fastq.gz 3.1 GB
EGAF00002446913 fastq.gz 3.2 GB
EGAF00002446914 fastq.gz 2.8 GB
EGAF00002446915 fastq.gz 2.9 GB
EGAF00002446916 fastq.gz 3.5 GB
EGAF00002446917 fastq.gz 3.6 GB
EGAF00002446918 fastq.gz 3.4 GB
EGAF00002446919 fastq.gz 3.4 GB
EGAF00002446920 fastq.gz 2.7 GB
EGAF00002446921 fastq.gz 2.8 GB
EGAF00002446922 fastq.gz 2.8 GB
EGAF00002446923 fastq.gz 2.9 GB
EGAF00002446924 fastq.gz 3.0 GB
EGAF00002446925 fastq.gz 3.1 GB
EGAF00002446926 fastq.gz 2.6 GB
EGAF00002446927 fastq.gz 2.7 GB
EGAF00002446928 fastq.gz 2.7 GB
EGAF00002446929 fastq.gz 2.8 GB
22 Files (65.9 GB)