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WTS data of patients diagnosed with NKTL

Whole-transcriptome sequencing (WTS) of 36 samples from patients diagnosed with NKTL. Total RNA from snap frozen EITL tumor samples was extracted using TRIzol (Invitrogen) and purified with RNeasy Mini Kit (Qiagen) according to manufacturer’s instructions. The integrity of RNA was determined by electrophoresis using 2100 Bioanalyzer (Agilent Technologies). 500 ng of total RNA was reverse transcribed with iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA, USA). Quantification was performed using SsoFast EvaGreen Supermix and CFX96 Real-Time PCR System (both Bio-Rad). Sequencing libraries were prepared using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero (Illumina) and WTS was performed on HiSeq 2500 and HiSeq 3000 (Illumina) with 2x101 bp and 2x151 bp read length, respectively.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002420 Other
EGAS00001003828 Other
ID File Type Size Located in
EGAF00002018373 fq.gz 3.2 GB
EGAF00002018374 fq.gz 3.3 GB
EGAF00002018375 fq.gz 2.9 GB
EGAF00002018376 fq.gz 3.1 GB
EGAF00002018377 fq.gz 5.6 GB
EGAF00002018378 fq.gz 5.8 GB
EGAF00002018379 fq.gz 2.4 GB
EGAF00002018380 fq.gz 2.6 GB
EGAF00002018381 fq.gz 2.7 GB
EGAF00002018382 fq.gz 2.9 GB
EGAF00002018383 fq.gz 3.5 GB
EGAF00002018384 fq.gz 3.6 GB
EGAF00002018385 fq.gz 2.9 GB
EGAF00002018386 fq.gz 3.0 GB
EGAF00002018387 fq.gz 3.1 GB
EGAF00002018388 fq.gz 3.3 GB
EGAF00002018389 fq.gz 7.3 GB
EGAF00002018390 fq.gz 7.5 GB
EGAF00002018391 fq.gz 5.1 GB
EGAF00002018392 fq.gz 5.2 GB
EGAF00002018393 fq.gz 6.8 GB
EGAF00002018394 fq.gz 7.0 GB
EGAF00002018395 fq.gz 6.1 GB
EGAF00002018396 fq.gz 6.2 GB
EGAF00002018397 fq.gz 5.4 GB
EGAF00002018398 fq.gz 5.9 GB
EGAF00002018399 fq.gz 3.6 GB
EGAF00002018400 fq.gz 4.5 GB
EGAF00002018401 fq.gz 2.3 GB
EGAF00002018402 fq.gz 2.9 GB
EGAF00002018403 fq.gz 2.1 GB
EGAF00002018404 fq.gz 2.6 GB
EGAF00002018405 fq.gz 2.8 GB
EGAF00002018406 fq.gz 3.6 GB
EGAF00002018407 fq.gz 3.8 GB
EGAF00002018408 fq.gz 4.9 GB
EGAF00002018409 fq.gz 3.7 GB
EGAF00002018410 fq.gz 4.6 GB
EGAF00002018411 fq.gz 2.9 GB
EGAF00002018412 fq.gz 3.0 GB
EGAF00002018413 fq.gz 3.8 GB
EGAF00002018414 fq.gz 5.0 GB
EGAF00002018415 fq.gz 2.5 GB
EGAF00002018416 fq.gz 3.1 GB
EGAF00002018417 fq.gz 3.5 GB
EGAF00002018418 fq.gz 4.4 GB
EGAF00002018419 fq.gz 5.0 GB
EGAF00002018420 fq.gz 5.4 GB
EGAF00002018421 fq.gz 4.4 GB
EGAF00002018422 fq.gz 4.6 GB
EGAF00002018423 fq.gz 3.1 GB
EGAF00002018424 fq.gz 3.1 GB
EGAF00002018425 fq.gz 5.2 GB
EGAF00002018426 fq.gz 5.3 GB
EGAF00002018427 fq.gz 3.0 GB
EGAF00002018428 fq.gz 3.1 GB
EGAF00002545038 fq.gz 3.0 GB
EGAF00002545039 fq.gz 3.2 GB
EGAF00002545040 fq.gz 3.4 GB
EGAF00002545041 fq.gz 3.6 GB
EGAF00002545042 fq.gz 3.3 GB
EGAF00002545043 fq.gz 3.5 GB
EGAF00002545044 fq.gz 2.9 GB
EGAF00002545045 fq.gz 3.2 GB
EGAF00002545046 fq.gz 3.3 GB
EGAF00002545047 fq.gz 3.6 GB
EGAF00002545048 fq.gz 4.0 GB
EGAF00002545049 fq.gz 4.3 GB
EGAF00002545050 fq.gz 2.8 GB
EGAF00002545051 fq.gz 3.0 GB
EGAF00002545052 fq.gz 3.1 GB
EGAF00002545053 fq.gz 3.3 GB
EGAF00002545054 fq.gz 4.3 GB
EGAF00002545055 fq.gz 4.6 GB
EGAF00002545056 fq.gz 3.1 GB
EGAF00002545057 fq.gz 3.4 GB
EGAF00002545058 fq.gz 3.2 GB
EGAF00002545059 fq.gz 3.5 GB
EGAF00002545060 fq.gz 3.0 GB
EGAF00002545061 fq.gz 3.2 GB
EGAF00002545062 fq.gz 4.1 GB
EGAF00002545063 fq.gz 4.4 GB
82 Files (318.5 GB)