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The mutational landscape of skin tumours in CYLD cutaneous syndrome

This dataset contains genomic and transcriptomic profiling of skin samples (74) from patients with CYLD cutaneous syndrome

Request Access

This policy has been reviewed by the legal services department at Newcastle University

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom NEWCASTLE UNIVERSITY grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: NEWCASTLE UNIVERSITY and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. NEWCASTLE UNIVERSITY: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify NEWCASTLE UNIVERSITY within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify NEWCASTLE UNIVERSITY prior to any significant changes to the protocol for the Project. 14. The User Institution will notify NEWCASTLE UNIVERSITY as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. NEWCASTLE UNIVERSITY may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than NEWCASTLE UNIVERSITY. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003839 Other
EGAS00001003840 Other
EGAS00001003841 Other
ID File Type Size Located in
EGAF00002558382 fastq.gz 2.4 GB
EGAF00002558383 fastq.gz 2.4 GB
EGAF00002558384 fastq.gz 3.7 GB
EGAF00002558385 fastq.gz 3.8 GB
EGAF00002558386 fastq.gz 2.9 GB
EGAF00002558387 fastq.gz 3.0 GB
EGAF00002558388 fastq.gz 2.4 GB
EGAF00002558389 fastq.gz 2.5 GB
EGAF00002558390 fastq.gz 3.1 GB
EGAF00002558391 fastq.gz 3.2 GB
EGAF00002558392 fastq.gz 3.0 GB
EGAF00002558393 fastq.gz 3.1 GB
EGAF00002558394 fastq.gz 3.4 GB
EGAF00002558395 fastq.gz 3.5 GB
EGAF00002558396 fastq.gz 3.1 GB
EGAF00002558397 fastq.gz 3.3 GB
EGAF00002558398 fastq.gz 3.3 GB
EGAF00002558399 fastq.gz 3.3 GB
EGAF00002558400 fastq.gz 2.0 GB
EGAF00002558401 fastq.gz 2.1 GB
EGAF00002558402 fastq.gz 3.0 GB
EGAF00002558403 fastq.gz 3.0 GB
EGAF00002558404 fastq.gz 3.0 GB
EGAF00002558405 fastq.gz 3.2 GB
EGAF00002558406 fastq.gz 1.7 GB
EGAF00002558407 fastq.gz 1.7 GB
EGAF00002558408 fastq.gz 2.7 GB
EGAF00002558409 fastq.gz 2.9 GB
EGAF00002558410 fastq.gz 273.9 MB
EGAF00002558411 fastq.gz 301.2 MB
EGAF00002558412 fastq.gz 236.7 MB
EGAF00002558413 fastq.gz 261.6 MB
EGAF00002558414 fastq.gz 305.7 MB
EGAF00002558415 fastq.gz 337.3 MB
EGAF00002558416 fastq.gz 299.8 MB
EGAF00002558417 fastq.gz 331.7 MB
EGAF00002558418 fastq.gz 239.3 MB
EGAF00002558419 fastq.gz 263.8 MB
EGAF00002558420 fastq.gz 320.1 MB
EGAF00002558421 fastq.gz 353.0 MB
EGAF00002558422 fastq.gz 139.3 MB
EGAF00002558423 fastq.gz 154.9 MB
EGAF00002558424 fastq.gz 213.8 MB
EGAF00002558425 fastq.gz 234.8 MB
EGAF00002558426 fastq.gz 198.6 MB
EGAF00002558427 fastq.gz 219.7 MB
EGAF00002558428 fastq.gz 155.1 MB
EGAF00002558429 fastq.gz 171.8 MB
EGAF00002558430 fastq.gz 231.9 MB
EGAF00002558431 fastq.gz 255.2 MB
EGAF00002558432 fastq.gz 141.9 MB
EGAF00002558433 fastq.gz 155.8 MB
EGAF00002558434 fastq.gz 185.5 MB
EGAF00002558435 fastq.gz 203.5 MB
EGAF00002558436 fastq.gz 150.8 MB
EGAF00002558437 fastq.gz 165.3 MB
EGAF00002558438 fastq.gz 222.7 MB
EGAF00002558439 fastq.gz 243.3 MB
EGAF00002558440 fastq.gz 251.7 MB
EGAF00002558441 fastq.gz 275.7 MB
EGAF00002558442 fastq.gz 155.5 MB
EGAF00002558443 fastq.gz 172.4 MB
EGAF00002558444 fastq.gz 158.1 MB
EGAF00002558445 fastq.gz 175.2 MB
EGAF00002558446 fastq.gz 326.9 MB
EGAF00002558447 fastq.gz 362.4 MB
EGAF00002558448 fastq.gz 217.2 MB
EGAF00002558449 fastq.gz 240.3 MB
EGAF00002558450 fastq.gz 166.3 MB
EGAF00002558451 fastq.gz 184.3 MB
EGAF00002558452 fastq.gz 159.6 MB
EGAF00002558453 fastq.gz 175.3 MB
EGAF00002558454 fastq.gz 139.2 MB
EGAF00002558455 fastq.gz 152.6 MB
EGAF00002558456 bam 2.2 GB
EGAF00002558457 bam 1.1 GB
EGAF00002558458 bam 1.1 GB
EGAF00002558459 bam 1.3 GB
EGAF00002558460 bam 1.4 GB
EGAF00002558461 bam 1.4 GB
EGAF00002558462 bam 1.6 GB
EGAF00002558463 fastq.gz 3.4 GB
EGAF00002558464 fastq.gz 3.4 GB
EGAF00002558465 fastq.gz 3.1 GB
EGAF00002558466 fastq.gz 3.2 GB
EGAF00002558467 fastq.gz 2.2 GB
EGAF00002558468 fastq.gz 2.2 GB
EGAF00002558469 fastq.gz 2.7 GB
EGAF00002558470 fastq.gz 2.8 GB
EGAF00002558471 fastq.gz 2.9 GB
EGAF00002558472 fastq.gz 3.0 GB
EGAF00002558473 fastq.gz 2.1 GB
EGAF00002558474 fastq.gz 2.1 GB
EGAF00002558475 fastq.gz 3.2 GB
EGAF00002558476 fastq.gz 3.3 GB
EGAF00002558477 fastq.gz 2.4 GB
EGAF00002558478 fastq.gz 2.4 GB
EGAF00002558479 fastq.gz 9.6 GB
EGAF00002558480 fastq.gz 9.9 GB
EGAF00002558481 fastq.gz 3.0 GB
EGAF00002558482 fastq.gz 3.1 GB
EGAF00002558483 fastq.gz 2.0 GB
EGAF00002558484 fastq.gz 2.1 GB
EGAF00002558485 fastq.gz 2.7 GB
EGAF00002558486 fastq.gz 2.8 GB
EGAF00002558487 fastq.gz 2.8 GB
EGAF00002558488 fastq.gz 2.8 GB
EGAF00002558489 fastq.gz 2.5 GB
EGAF00002558490 fastq.gz 2.6 GB
EGAF00002558491 fastq.gz 2.8 GB
EGAF00002558492 fastq.gz 3.0 GB
EGAF00002558493 fastq.gz 2.3 GB
EGAF00002558494 fastq.gz 2.4 GB
EGAF00002558495 fastq.gz 2.7 GB
EGAF00002558496 fastq.gz 2.7 GB
EGAF00002558497 fastq.gz 2.8 GB
EGAF00002558498 fastq.gz 2.9 GB
EGAF00002558499 fastq.gz 2.9 GB
EGAF00002558500 fastq.gz 2.9 GB
EGAF00002558501 fastq.gz 2.5 GB
EGAF00002558502 fastq.gz 2.6 GB
EGAF00002558503 fastq.gz 3.1 GB
EGAF00002558504 fastq.gz 3.2 GB
EGAF00002558505 fastq.gz 2.6 GB
EGAF00002558506 fastq.gz 2.6 GB
EGAF00002558507 fastq.gz 2.4 GB
EGAF00002558508 fastq.gz 2.4 GB
EGAF00002558509 fastq.gz 3.7 GB
EGAF00002558510 fastq.gz 3.8 GB
EGAF00002558511 fastq.gz 2.9 GB
EGAF00002558512 fastq.gz 3.0 GB
EGAF00002558513 fastq.gz 2.4 GB
EGAF00002558514 fastq.gz 2.5 GB
EGAF00002558515 fastq.gz 3.1 GB
EGAF00002558516 fastq.gz 3.2 GB
EGAF00002558517 fastq.gz 3.0 GB
EGAF00002558518 fastq.gz 3.1 GB
EGAF00002558519 fastq.gz 3.4 GB
EGAF00002558520 fastq.gz 3.5 GB
EGAF00002558521 fastq.gz 3.1 GB
EGAF00002558522 fastq.gz 3.2 GB
EGAF00002558523 fastq.gz 3.3 GB
EGAF00002558524 fastq.gz 3.3 GB
EGAF00002558525 fastq.gz 2.1 GB
EGAF00002558526 fastq.gz 2.1 GB
EGAF00002558527 fastq.gz 3.0 GB
EGAF00002558528 fastq.gz 3.0 GB
EGAF00002558529 fastq.gz 3.0 GB
EGAF00002558530 fastq.gz 3.2 GB
EGAF00002558531 fastq.gz 1.7 GB
EGAF00002558532 fastq.gz 1.7 GB
EGAF00002558533 fastq.gz 2.7 GB
EGAF00002558534 fastq.gz 2.9 GB
EGAF00002558535 fastq.gz 757.6 MB
EGAF00002558536 fastq.gz 780.2 MB
EGAF00002558537 fastq.gz 2.5 GB
EGAF00002558538 fastq.gz 2.6 GB
EGAF00002558539 fastq.gz 2.6 GB
EGAF00002558540 fastq.gz 2.7 GB
EGAF00002558541 fastq.gz 2.2 GB
EGAF00002558542 fastq.gz 2.2 GB
EGAF00002558543 fastq.gz 3.0 GB
EGAF00002558544 fastq.gz 3.1 GB
EGAF00002558545 fastq.gz 1.2 GB
EGAF00002558546 fastq.gz 1.2 GB
EGAF00002558547 fastq.gz 3.3 GB
EGAF00002558548 fastq.gz 3.3 GB
EGAF00002558549 fastq.gz 3.1 GB
EGAF00002558550 fastq.gz 3.2 GB
EGAF00002558551 fastq.gz 2.2 GB
EGAF00002558552 fastq.gz 2.2 GB
EGAF00002558553 fastq.gz 2.7 GB
EGAF00002558554 fastq.gz 2.8 GB
EGAF00002558555 fastq.gz 2.9 GB
EGAF00002558556 fastq.gz 2.9 GB
EGAF00002558557 fastq.gz 2.1 GB
EGAF00002558558 fastq.gz 2.1 GB
EGAF00002558559 fastq.gz 3.2 GB
EGAF00002558560 fastq.gz 3.3 GB
EGAF00002558561 fastq.gz 2.4 GB
EGAF00002558562 fastq.gz 2.4 GB
EGAF00002558563 fastq.gz 9.5 GB
EGAF00002558564 fastq.gz 9.8 GB
EGAF00002558565 fastq.gz 3.0 GB
EGAF00002558566 fastq.gz 3.1 GB
EGAF00002558567 fastq.gz 2.0 GB
EGAF00002558568 fastq.gz 2.1 GB
EGAF00002558569 fastq.gz 2.7 GB
EGAF00002558570 fastq.gz 2.8 GB
EGAF00002558571 fastq.gz 2.7 GB
EGAF00002558572 fastq.gz 2.8 GB
EGAF00002558573 fastq.gz 2.5 GB
EGAF00002558574 fastq.gz 2.6 GB
EGAF00002558575 fastq.gz 2.9 GB
EGAF00002558576 fastq.gz 3.0 GB
EGAF00002558577 fastq.gz 2.3 GB
EGAF00002558578 fastq.gz 2.3 GB
EGAF00002558579 fastq.gz 2.7 GB
EGAF00002558580 fastq.gz 2.7 GB
EGAF00002558581 fastq.gz 2.8 GB
EGAF00002558582 fastq.gz 2.9 GB
EGAF00002558583 fastq.gz 2.9 GB
EGAF00002558584 fastq.gz 2.9 GB
EGAF00002558585 fastq.gz 2.4 GB
EGAF00002558586 fastq.gz 2.5 GB
EGAF00002558587 fastq.gz 3.1 GB
EGAF00002558588 fastq.gz 3.2 GB
EGAF00002558589 fastq.gz 2.6 GB
EGAF00002558590 fastq.gz 2.6 GB
EGAF00002558591 fastq.gz 742.4 MB
EGAF00002558592 fastq.gz 763.9 MB
EGAF00002558593 fastq.gz 2.5 GB
EGAF00002558594 fastq.gz 2.6 GB
EGAF00002558595 fastq.gz 2.6 GB
EGAF00002558596 fastq.gz 2.7 GB
EGAF00002558597 fastq.gz 2.2 GB
EGAF00002558598 fastq.gz 2.2 GB
EGAF00002558599 fastq.gz 3.0 GB
EGAF00002558600 fastq.gz 3.1 GB
EGAF00002558601 fastq.gz 1.2 GB
EGAF00002558602 fastq.gz 1.2 GB
EGAF00002558603 fastq.gz 206.0 MB
EGAF00002558604 fastq.gz 227.7 MB
EGAF00002558605 fastq.gz 5.3 GB
EGAF00002558606 fastq.gz 5.3 GB
EGAF00002558607 fastq.gz 5.4 GB
EGAF00002558608 fastq.gz 5.3 GB
EGAF00002558609 fastq.gz 6.5 GB
EGAF00002558610 fastq.gz 6.6 GB
EGAF00002558611 fastq.gz 5.6 GB
EGAF00002558612 fastq.gz 5.7 GB
EGAF00002558613 fastq.gz 5.6 GB
EGAF00002558614 fastq.gz 5.6 GB
EGAF00002558615 fastq.gz 5.1 GB
EGAF00002558616 fastq.gz 5.1 GB
EGAF00002558617 fastq.gz 4.7 GB
EGAF00002558618 fastq.gz 4.7 GB
EGAF00002558619 fastq.gz 5.3 GB
EGAF00002558620 fastq.gz 5.3 GB
EGAF00002558621 fastq.gz 4.5 GB
EGAF00002558622 fastq.gz 4.4 GB
EGAF00002558623 fastq.gz 5.0 GB
EGAF00002558624 fastq.gz 5.0 GB
EGAF00002558625 fastq.gz 5.0 GB
EGAF00002558626 fastq.gz 5.0 GB
EGAF00002558627 fastq.gz 5.9 GB
EGAF00002558628 fastq.gz 5.8 GB
EGAF00002558629 fastq.gz 6.1 GB
EGAF00002558630 fastq.gz 6.1 GB
EGAF00002558631 fastq.gz 6.7 GB
EGAF00002558632 fastq.gz 6.6 GB
EGAF00002558633 fastq.gz 4.8 GB
EGAF00002558634 fastq.gz 4.8 GB
EGAF00002558635 fastq.gz 6.5 GB
EGAF00002558636 fastq.gz 6.5 GB
EGAF00002558637 fastq.gz 5.7 GB
EGAF00002558638 fastq.gz 5.6 GB
EGAF00002558639 fastq.gz 4.9 GB
EGAF00002558640 fastq.gz 4.9 GB
EGAF00002558641 fastq.gz 4.4 GB
EGAF00002558642 fastq.gz 4.4 GB
261 Files (704.4 GB)