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WTS data of patients diagnosed with angiosarcoma

Whole-transcriptome sequencing (WTS) of 6 tumor-normal and 6 tumor-only samples from patients diagnosed with angiosarcoma. Total RNA from snap frozen EITL tumor samples was extracted using TRIzol (Invitrogen) and purified with RNeasy Mini Kit (Qiagen) according to manufacturer’s instructions. The integrity of RNA was determined by electrophoresis using 2100 Bioanalyzer (Agilent Technologies). 500 ng of total RNA was reverse transcribed with iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA, USA). Quantification was performed using SsoFast EvaGreen Supermix and CFX96 Real-Time PCR System (both Bio-Rad). Sequencing libraries were prepared using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero (Illumina) and WTS was performed on HiSeq 2500 and HiSeq 3000 (Illumina) with 2x101 bp and 2x151 bp read length, respectively.

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Data access policy for Angiosarcoma study. National Cancer Centre Singapore

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003895 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002796729 fastq.gz 3.0 GB
EGAF00002796730 fastq.gz 3.5 GB
EGAF00002796731 fastq.gz 2.9 GB
EGAF00002796732 fastq.gz 3.5 GB
EGAF00002796733 fastq.gz 2.0 GB
EGAF00002796734 fastq.gz 2.1 GB
EGAF00002796735 fastq.gz 3.0 GB
EGAF00002796736 fastq.gz 3.4 GB
EGAF00002796737 fastq.gz 2.8 GB
EGAF00002796738 fastq.gz 3.2 GB
EGAF00002796739 fastq.gz 3.8 GB
EGAF00002796740 fastq.gz 4.0 GB
EGAF00002796741 fastq.gz 3.3 GB
EGAF00002796742 fastq.gz 3.6 GB
EGAF00002796743 fastq.gz 2.3 GB
EGAF00002796744 fastq.gz 2.4 GB
EGAF00002796745 fastq.gz 3.0 GB
EGAF00002796746 fastq.gz 3.5 GB
EGAF00002796747 fastq.gz 2.0 GB
EGAF00002796748 fastq.gz 2.0 GB
EGAF00002796749 fastq.gz 2.6 GB
EGAF00002796750 fastq.gz 3.0 GB
EGAF00002796751 fastq.gz 2.3 GB
EGAF00002796752 fastq.gz 2.6 GB
EGAF00002796753 fastq.gz 3.9 GB
EGAF00002796754 fastq.gz 4.2 GB
EGAF00002796755 fastq.gz 3.6 GB
EGAF00002796756 fastq.gz 3.9 GB
EGAF00002796757 fastq.gz 2.7 GB
EGAF00002796758 fastq.gz 3.1 GB
EGAF00002796759 fastq.gz 2.4 GB
EGAF00002796760 fastq.gz 2.8 GB
EGAF00002796761 fastq.gz 2.9 GB
EGAF00002796762 fastq.gz 3.4 GB
EGAF00002796763 fastq.gz 2.8 GB
EGAF00002796764 fastq.gz 3.2 GB
36 Files (108.6 GB)