Dataset

Patient tumour data (RNAseq, WGBS, ChIPseq, WGS)

Dataset ID Technology Samples
EGAD00001005492 N/A 172

Dataset Description

Content: 60 GB patient tumours and 4 normal brain samples combined in pairs by region (x2=8 total input samples).

RNAseq: 1 lane per sample, total strand-specific rRNA-depleted (normal samples were combined = 2 lanes/samples per brain region).
WGBS: 2 lanes per sample (normal samples were combined = 2 lanes/samples per brain region).
ChIPseq (histone mark): a subset of 20 GB samples were profiled. For the same modification were multiplexed and sequenced on 4 lanes each (H3K27ac, H3K4me1) or a single lane (all others).
WGS: used as matching input control for the 20 ChIPseq samples.

Data type and technology:
RNA-seq: PE 100bp sequenced on HiSeq2000.
WGBS: PE 100bp sequenced on HiSeq2000/4000.
ChIPseq: SE 50bp sequenced on HiSeq2000/4000.
WGS: PE 150bp sequenced on HiSeq X.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

DKFZ-HIPO Data Access Committee of Heidelberg Center for Personalized Oncology
Contact person: Katja Beck
Email: hipo_daco [at] dkfz-heidelberg [dot] de
More details: EGAC00001000452

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