Dataset

Cell line data (RNAseq, ATACseq, ChIPseq)

Dataset ID Technology Samples
EGAD00001005493 N/A 6

Dataset Description

Content: 2 GB RTK I cell lines (LN229, ZH487) in two conditions (NT control and shSOX10).

RNAseq: single replicates per condition, polyA+ RNA sequencing, SE.
ATACseq: biological replicates per condition, SE.
ChIPseq (histone H3 modifications, LN229 only): all marks for each condition were pooled and sequenced on two lanes for each pool.
ChIPseq (BRD4 and SOX10): SOX10 libraries were sequenced on single lanes. BRD4 samples were multiplexed and sequenced in two lanes.
ChIPseq input samples are also included.

Data type and technology:
RNAseq: SE 50bp sequenced on HiSeq2000/4000.
ATACseq: SE 50bp sequenced on HiSeq2000/4000.
ChIPseq: SE 50bp sequenced on HiSeq2000/4000.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

DKFZ-HIPO Data Access Committee of Heidelberg Center for Personalized Oncology
Contact person: Katja Beck
Email: hipo_daco [at] dkfz-heidelberg [dot] de
More details: EGAC00001000452

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