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Cell line data (RNAseq, ATACseq, ChIPseq)

Content: 2 GB RTK I cell lines (LN229, ZH487) in two conditions (NT control and shSOX10). RNAseq: single replicates per condition, polyA+ RNA sequencing, SE. ATACseq: biological replicates per condition, SE. ChIPseq (histone H3 modifications, LN229 only): all marks for each condition were pooled and sequenced on two lanes for each pool. ChIPseq (BRD4 and SOX10): SOX10 libraries were sequenced on single lanes. BRD4 samples were multiplexed and sequenced in two lanes. ChIPseq input samples are also included. Data type and technology: RNAseq: SE 50bp sequenced on HiSeq2000/4000. ATACseq: SE 50bp sequenced on HiSeq2000/4000. ChIPseq: SE 50bp sequenced on HiSeq2000/4000.

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Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003953 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002861455 fastq.gz 808.1 MB
EGAF00002861457 fastq.gz 812.6 MB
EGAF00002861459 fastq.gz 984.4 MB
EGAF00002861461 fastq.gz 989.4 MB
EGAF00002861462 fastq.gz 950.4 MB
EGAF00002861465 fastq.gz 955.8 MB
EGAF00002861579 fastq.gz 674.3 MB
EGAF00002861580 fastq.gz 679.5 MB
EGAF00002861581 fastq.gz 584.4 MB
EGAF00002861582 fastq.gz 584.3 MB
EGAF00002861763 fastq.gz 2.1 GB
EGAF00002861764 fastq.gz 2.1 GB
EGAF00002861765 fastq.gz 1.9 GB
EGAF00002861766 fastq.gz 2.0 GB
EGAF00002861767 fastq.gz 2.0 GB
EGAF00002861768 fastq.gz 2.1 GB
EGAF00002861769 fastq.gz 2.5 GB
EGAF00002861770 fastq.gz 2.1 GB
EGAF00002861771 fastq.gz 1.3 GB
EGAF00002861772 fastq.gz 1.3 GB
EGAF00002861773 fastq.gz 1.6 GB
EGAF00002861774 fastq.gz 1.6 GB
EGAF00002861775 fastq.gz 1.4 GB
EGAF00002861776 fastq.gz 1.5 GB
EGAF00002861777 fastq.gz 1.6 GB
EGAF00002861778 fastq.gz 1.6 GB
EGAF00002861779 fastq.gz 623.2 MB
EGAF00002861780 fastq.gz 628.2 MB
EGAF00002861790 fastq.gz 654.3 MB
EGAF00002861791 fastq.gz 659.5 MB
EGAF00002861792 fastq.gz 505.1 MB
EGAF00002861793 fastq.gz 504.8 MB
EGAF00002861803 fastq.gz 560.5 MB
EGAF00002861804 fastq.gz 560.2 MB
EGAF00002861805 fastq.gz 685.8 MB
EGAF00002861806 fastq.gz 691.2 MB
EGAF00002861807 fastq.gz 528.4 MB
EGAF00002861808 fastq.gz 528.2 MB
EGAF00002861809 fastq.gz 683.5 MB
EGAF00002861810 fastq.gz 688.7 MB
EGAF00002861811 fastq.gz 594.6 MB
EGAF00002861812 fastq.gz 594.1 MB
EGAF00002861813 fastq.gz 663.1 MB
EGAF00002861814 fastq.gz 668.3 MB
EGAF00002861815 fastq.gz 609.3 MB
EGAF00002861816 fastq.gz 609.0 MB
EGAF00002861817 fastq.gz 1.3 GB
EGAF00002861818 fastq.gz 1.3 GB
EGAF00002861819 fastq.gz 1.3 GB
EGAF00002861820 fastq.gz 1.3 GB
EGAF00002861821 fastq.gz 1.3 GB
EGAF00002861822 fastq.gz 1.3 GB
EGAF00002861823 fastq.gz 1.7 GB
EGAF00002861824 fastq.gz 1.7 GB
EGAF00002861836 fastq.gz 752.2 MB
EGAF00002861837 fastq.gz 758.1 MB
EGAF00002861838 fastq.gz 568.1 MB
EGAF00002861839 fastq.gz 567.8 MB
EGAF00002861847 fastq.gz 1.7 GB
EGAF00002861848 fastq.gz 1.7 GB
EGAF00002861849 fastq.gz 1.7 GB
EGAF00002861850 fastq.gz 1.7 GB
EGAF00002861851 fastq.gz 2.9 GB
EGAF00002861852 fastq.gz 2.6 GB
EGAF00002862093 fastq.gz 1.2 GB
EGAF00002862095 fastq.gz 1.2 GB
66 Files (77.6 GB)