About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

76 cancer and normal whole genomes from eleven SI-NET patients

This dataset comprises of 76 cancer and normal whole genomes obtained from 11 SI-NET patients, in the form of two fastq files (forward and reverse reads) for each genome containing sequences generated by Illumina NovaSeq 6000 system.

Request Access

DUO:0000006
version: 2019-01-07

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000019
version: 2019-01-07

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2019-01-07

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2019-01-07

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Data access policy to be signed by the parties willing to access SI-NET study data, adapted from THE WELLCOME TRUST CASE-CONTROL CONSORTIUM DATA ACCESS AGREEMENT

In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research, according to the consent obtained from sample donors. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to link the data provided under this agreement to other information or archive data available for the data sets provided, even if access to that data has been formally granted to you, or it is freely available without restriction, without specific permission being sought from the relevent access committees. 4. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outwith the same Institution, the third party must make a separate application for access to the Data. 5. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and approval. 6. You accept that Data will be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 7. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the the original data creators. 8. You accept that the original data creators, depositors or the funders of the Data or any part of the Data supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 9. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 10. You recognise that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 11. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 12. You accept that it may be necessary for the original data creators to alter the terms of this agreement from time to time in order to address new concerns. In this event, the original data creators or their appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 13. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 14. You accept that the Data is protected by and subject to international laws, including The EU's GDPR (General Data Protection Regulation), and that You are responsible for ensuring compliance with any such applicable law. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to GDPR. 15. This agreement shall be interpreted and construed in accordance with the laws of the country of the defending party, in cases where your Institution is the defending party, or the laws of Sweden, in cases where the original data creators are the defending party. Unless specified otherwise, reference in this agreement to a statute refers to that statute as it may be amended, or to any restated or successor legislation of comparable effect.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004435 Other
EGAS00001005009 Other
EGAS00001005096 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00003943830 fastq.gz 29.8 GB Report
EGAF00003943831 fastq.gz 30.9 GB Report
EGAF00003943832 fastq.gz 33.4 GB Report
EGAF00003943833 fastq.gz 34.7 GB Report
EGAF00003943834 fastq.gz 30.2 GB Report
EGAF00003943835 fastq.gz 31.4 GB Report
EGAF00003943836 fastq.gz 29.3 GB Report
EGAF00003943837 fastq.gz 30.3 GB Report
EGAF00003943838 fastq.gz 29.2 GB Report
EGAF00003943839 fastq.gz 30.2 GB Report
EGAF00003943840 fastq.gz 28.4 GB Report
EGAF00003943841 fastq.gz 29.5 GB Report
EGAF00003943842 fastq.gz 27.7 GB Report
EGAF00003943843 fastq.gz 28.7 GB Report
EGAF00003943844 fastq.gz 26.7 GB Report
EGAF00003943845 fastq.gz 27.7 GB Report
EGAF00003943846 fastq.gz 28.8 GB Report
EGAF00003943847 fastq.gz 29.3 GB Report
EGAF00003943848 fastq.gz 30.3 GB Report
EGAF00003943849 fastq.gz 30.9 GB Report
EGAF00003943850 fastq.gz 29.3 GB Report
EGAF00003943851 fastq.gz 29.8 GB Report
EGAF00003943852 fastq.gz 30.2 GB Report
EGAF00003943853 fastq.gz 30.7 GB Report
EGAF00003943854 fastq.gz 30.5 GB Report
EGAF00003943855 fastq.gz 31.6 GB Report
EGAF00003943856 fastq.gz 32.2 GB Report
EGAF00003943857 fastq.gz 33.4 GB Report
EGAF00003943858 fastq.gz 28.3 GB Report
EGAF00003943859 fastq.gz 29.4 GB Report
EGAF00003943860 fastq.gz 30.0 GB Report
EGAF00003943861 fastq.gz 31.0 GB Report
EGAF00003943862 fastq.gz 29.5 GB Report
EGAF00003943863 fastq.gz 30.6 GB Report
EGAF00003943864 fastq.gz 30.7 GB Report
EGAF00003943865 fastq.gz 31.9 GB Report
EGAF00003943866 fastq.gz 29.0 GB Report
EGAF00003943867 fastq.gz 30.1 GB Report
EGAF00003943868 fastq.gz 29.9 GB Report
EGAF00003943869 fastq.gz 31.1 GB Report
EGAF00003943870 fastq.gz 27.7 GB Report
EGAF00003943871 fastq.gz 28.4 GB Report
EGAF00003943872 fastq.gz 32.1 GB Report
EGAF00003943873 fastq.gz 33.0 GB Report
EGAF00003943874 fastq.gz 28.2 GB Report
EGAF00003943875 fastq.gz 29.0 GB Report
EGAF00003943876 fastq.gz 27.0 GB Report
EGAF00003943877 fastq.gz 27.7 GB Report
EGAF00003943878 fastq.gz 28.1 GB Report
EGAF00003943879 fastq.gz 28.8 GB Report
EGAF00003943880 fastq.gz 27.6 GB Report
EGAF00003943881 fastq.gz 28.3 GB Report
EGAF00003943882 fastq.gz 28.0 GB Report
EGAF00003943883 fastq.gz 28.9 GB Report
EGAF00003943884 fastq.gz 31.3 GB Report
EGAF00003943885 fastq.gz 32.4 GB Report
EGAF00003943886 fastq.gz 29.4 GB Report
EGAF00003943887 fastq.gz 30.2 GB Report
EGAF00003943888 fastq.gz 33.7 GB Report
EGAF00003943889 fastq.gz 35.0 GB Report
EGAF00003943890 fastq.gz 27.9 GB Report
EGAF00003943891 fastq.gz 28.8 GB Report
EGAF00003943892 fastq.gz 28.5 GB Report
EGAF00003943893 fastq.gz 29.4 GB Report
EGAF00003943894 fastq.gz 28.2 GB Report
EGAF00003943895 fastq.gz 29.2 GB Report
EGAF00003943896 fastq.gz 28.5 GB Report
EGAF00003943897 fastq.gz 29.5 GB Report
EGAF00003943898 fastq.gz 28.0 GB Report
EGAF00003943899 fastq.gz 29.0 GB Report
EGAF00003943900 fastq.gz 28.7 GB Report
EGAF00003943901 fastq.gz 29.6 GB Report
EGAF00003943902 fastq.gz 29.8 GB Report
EGAF00003943903 fastq.gz 30.8 GB Report
EGAF00003943904 fastq.gz 31.9 GB Report
EGAF00003943905 fastq.gz 33.0 GB Report
EGAF00003943906 fastq.gz 29.0 GB Report
EGAF00003943907 fastq.gz 30.0 GB Report
EGAF00003943908 fastq.gz 29.4 GB Report
EGAF00003943909 fastq.gz 30.5 GB Report
EGAF00003943910 fastq.gz 29.5 GB Report
EGAF00003943911 fastq.gz 30.6 GB Report
EGAF00003943912 fastq.gz 29.4 GB Report
EGAF00003943913 fastq.gz 30.3 GB Report
EGAF00003943914 fastq.gz 30.1 GB Report
EGAF00003943915 fastq.gz 31.1 GB Report
EGAF00005067944 fastq.gz 26.2 GB Report
EGAF00005067945 fastq.gz 27.5 GB Report
EGAF00005067948 fastq.gz 26.1 GB Report
EGAF00005067949 fastq.gz 27.4 GB Report
EGAF00005067952 fastq.gz 23.8 GB Report
EGAF00005067953 fastq.gz 25.4 GB Report
EGAF00005067954 fastq.gz 23.0 GB Report
EGAF00005067955 fastq.gz 24.5 GB Report
EGAF00005067956 fastq.gz 26.0 GB Report
EGAF00005067957 fastq.gz 27.3 GB Report
EGAF00005067958 fastq.gz 24.3 GB Report
EGAF00005067959 fastq.gz 24.9 GB Report
EGAF00005067960 fastq.gz 23.2 GB Report
EGAF00005067961 fastq.gz 24.3 GB Report
EGAF00005067962 fastq.gz 25.8 GB Report
EGAF00005067963 fastq.gz 27.5 GB Report
EGAF00005067966 fastq.gz 25.1 GB Report
EGAF00005067967 fastq.gz 26.7 GB Report
EGAF00005067968 fastq.gz 26.5 GB Report
EGAF00005067969 fastq.gz 27.9 GB Report
EGAF00005067970 fastq.gz 25.2 GB Report
EGAF00005067971 fastq.gz 26.5 GB Report
EGAF00005067972 fastq.gz 25.1 GB Report
EGAF00005067973 fastq.gz 26.4 GB Report
EGAF00005067988 fastq.gz 25.1 GB Report
EGAF00005067989 fastq.gz 26.7 GB Report
EGAF00005067992 fastq.gz 25.6 GB Report
EGAF00005067993 fastq.gz 27.2 GB Report
EGAF00005067994 fastq.gz 24.3 GB Report
EGAF00005067995 fastq.gz 26.0 GB Report
EGAF00005067996 fastq.gz 25.8 GB Report
EGAF00005067997 fastq.gz 27.2 GB Report
EGAF00005067998 fastq.gz 28.6 GB Report
EGAF00005067999 fastq.gz 30.7 GB Report
EGAF00005068000 fastq.gz 26.0 GB Report
EGAF00005068001 fastq.gz 27.8 GB Report
EGAF00005068002 fastq.gz 29.3 GB Report
EGAF00005068003 fastq.gz 31.1 GB Report
EGAF00005068006 fastq.gz 26.3 GB Report
EGAF00005068007 fastq.gz 28.0 GB Report
EGAF00005068008 fastq.gz 26.1 GB Report
EGAF00005068009 fastq.gz 27.9 GB Report
EGAF00005068010 fastq.gz 23.9 GB Report
EGAF00005068011 fastq.gz 25.2 GB Report
EGAF00005069296 fastq.gz 26.0 GB Report
EGAF00005069297 fastq.gz 27.7 GB Report
EGAF00005069308 fastq.gz 28.8 GB Report
EGAF00005069309 fastq.gz 31.0 GB Report
EGAF00005069310 fastq.gz 28.6 GB Report
EGAF00005069311 fastq.gz 30.2 GB Report
EGAF00005069312 fastq.gz 26.2 GB Report
EGAF00005069313 fastq.gz 27.7 GB Report
EGAF00005069314 fastq.gz 26.4 GB Report
EGAF00005069315 fastq.gz 27.9 GB Report
EGAF00005069318 fastq.gz 27.6 GB Report
EGAF00005069319 fastq.gz 29.2 GB Report
EGAF00005069320 fastq.gz 26.8 GB Report
EGAF00005069321 fastq.gz 28.1 GB Report
EGAF00005069322 fastq.gz 26.5 GB Report
EGAF00005069323 fastq.gz 27.9 GB Report
EGAF00005069324 fastq.gz 29.3 GB Report
EGAF00005069325 fastq.gz 30.9 GB Report
EGAF00005069334 fastq.gz 26.1 GB Report
EGAF00005069335 fastq.gz 27.3 GB Report
EGAF00005069342 fastq.gz 25.5 GB Report
EGAF00005069343 fastq.gz 27.0 GB Report
152 Files (4.3 TB)