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Single Cell Targeted DNA sequencing for Variant Calling in T-ALL

This dataset contains the raw fastq-files and the VCF files of single cell targeted DNA sequening with the MissionBio Tapestri platform. This was performed on 8 male pediatric T-ALL cases: X09-XB37-XB47-XD83-XF91-XF97-XF100-XF121. For some patients we have timepoints during treatment: XF100 and XG121. XD83 is a patient that relapsed twice.

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VIB Policy for Data Access and Data Transfer

Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - The request should contain the following information: - Name, affiliation (legal entity) and contact information of the requesting recipient party. - Reference to the specific dataset(s) for which access or transfer is requested. - Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the request. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004440 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00003946240 fastq.gz 7.2 GB
EGAF00003946241 fastq.gz 7.8 GB
EGAF00003946242 fastq.gz 8.6 GB
EGAF00003946243 fastq.gz 9.3 GB
EGAF00003946244 fastq.gz 8.4 GB
EGAF00003946245 fastq.gz 9.1 GB
EGAF00003946246 fastq.gz 9.7 GB
EGAF00003946247 fastq.gz 10.6 GB
EGAF00003946248 fastq.gz 7.6 GB
EGAF00003946249 fastq.gz 8.2 GB
EGAF00003946250 fastq.gz 8.5 GB
EGAF00003946251 fastq.gz 9.3 GB
EGAF00003946252 fastq.gz 10.8 GB
EGAF00003946253 fastq.gz 11.8 GB
EGAF00003946254 fastq.gz 8.8 GB
EGAF00003946255 fastq.gz 9.5 GB
EGAF00003946256 fastq.gz 7.1 GB
EGAF00003946257 fastq.gz 7.8 GB
EGAF00003946258 fastq.gz 6.3 GB
EGAF00003946259 fastq.gz 6.8 GB
EGAF00003946260 fastq.gz 6.4 GB
EGAF00003946261 fastq.gz 6.9 GB
EGAF00003946262 fastq.gz 6.5 GB
EGAF00003946263 fastq.gz 7.1 GB
EGAF00003946264 fastq.gz 10.0 GB
EGAF00003946265 fastq.gz 10.8 GB
EGAF00003946266 fastq.gz 9.7 GB
EGAF00003946267 fastq.gz 10.9 GB
EGAF00003946268 fastq.gz 7.3 GB
EGAF00003946269 fastq.gz 7.8 GB
EGAF00003946270 fastq.gz 7.3 GB
EGAF00003946271 fastq.gz 7.9 GB
EGAF00003946272 fastq.gz 9.6 GB
EGAF00003946273 fastq.gz 10.4 GB
EGAF00003946274 fastq.gz 6.6 GB
EGAF00003946275 fastq.gz 7.1 GB
EGAF00003946276 fastq.gz 6.9 GB
EGAF00003946277 fastq.gz 7.4 GB
EGAF00003946278 fastq.gz 6.4 GB
EGAF00003946279 fastq.gz 6.9 GB
EGAF00003946280 fastq.gz 8.5 GB
EGAF00003946281 fastq.gz 9.2 GB
EGAF00003946282 fastq.gz 8.0 GB
EGAF00003946283 fastq.gz 8.7 GB
EGAF00003946284 fastq.gz 7.4 GB
EGAF00003946285 fastq.gz 8.0 GB
EGAF00003946286 fastq.gz 6.5 GB
EGAF00003946287 fastq.gz 7.1 GB
EGAF00003946288 fastq.gz 6.9 GB
EGAF00003946289 fastq.gz 7.6 GB
EGAF00003946290 fastq.gz 6.9 GB
EGAF00003946291 fastq.gz 7.4 GB
EGAF00003946292 fastq.gz 7.9 GB
EGAF00003946293 fastq.gz 8.4 GB
EGAF00003946294 fastq.gz 8.3 GB
EGAF00003946295 fastq.gz 8.9 GB
EGAF00003946296 fastq.gz 9.2 GB
EGAF00003946297 fastq.gz 10.0 GB
EGAF00003946298 fastq.gz 10.8 GB
EGAF00003946299 fastq.gz 11.6 GB
EGAF00003946300 fastq.gz 10.2 GB
EGAF00003946301 fastq.gz 11.2 GB
EGAF00003946302 fastq.gz 5.4 GB
EGAF00003946303 fastq.gz 5.9 GB
EGAF00003946304 fastq.gz 8.6 GB
EGAF00003946305 fastq.gz 9.4 GB
EGAF00003946306 fastq.gz 8.3 GB
EGAF00003946307 fastq.gz 9.2 GB
EGAF00003946308 fastq.gz 7.1 GB
EGAF00003946309 fastq.gz 7.7 GB
EGAF00003946310 fastq.gz 8.1 GB
EGAF00003946311 fastq.gz 8.8 GB
EGAF00003946312 fastq.gz 7.9 GB
EGAF00003946313 fastq.gz 8.7 GB
EGAF00003946314 fastq.gz 7.0 GB
EGAF00003946315 fastq.gz 7.7 GB
EGAF00003946316 fastq.gz 8.4 GB
EGAF00003946317 fastq.gz 9.4 GB
EGAF00003946318 fastq.gz 6.1 GB
EGAF00003946319 fastq.gz 6.7 GB
EGAF00003946320 fastq.gz 6.6 GB
EGAF00003946321 fastq.gz 7.3 GB
EGAF00003946322 fastq.gz 5.6 GB
EGAF00003946323 fastq.gz 6.2 GB
EGAF00003946324 fastq.gz 10.2 GB
EGAF00003946325 fastq.gz 11.1 GB
EGAF00003946326 fastq.gz 8.1 GB
EGAF00003946327 fastq.gz 8.8 GB
EGAF00003946328 fastq.gz 9.0 GB
EGAF00003946329 fastq.gz 9.9 GB
EGAF00003946330 fastq.gz 4.0 GB
EGAF00003946331 fastq.gz 4.4 GB
EGAF00003946332 fastq.gz 10.1 GB
EGAF00003946333 fastq.gz 11.0 GB
EGAF00003946334 fastq.gz 6.8 GB
EGAF00003946335 fastq.gz 7.5 GB
EGAF00003946336 fastq.gz 6.8 GB
EGAF00003946337 fastq.gz 7.6 GB
EGAF00003946338 fastq.gz 8.2 GB
EGAF00003946339 fastq.gz 8.9 GB
EGAF00003949702 vcf.gz 1.3 GB
EGAF00003949703 vcf.gz 1.3 GB
EGAF00003949704 vcf.gz 1.7 GB
EGAF00003949705 vcf.gz 1.5 GB
EGAF00003949706 vcf.gz 1.0 GB
EGAF00003949707 vcf.gz 994.9 MB
EGAF00003949708 vcf.gz 1.4 GB
EGAF00003949709 vcf.gz 898.1 MB
EGAF00003949710 vcf.gz 1.9 GB
EGAF00003949711 vcf.gz 1.6 GB
EGAF00003949712 vcf.gz 1.5 GB
EGAF00003949713 vcf.gz 2.5 GB
EGAF00003949714 vcf.gz 1.7 GB
EGAF00003949715 vcf.gz 1.4 GB
EGAF00003949716 vcf.gz 1.4 GB
EGAF00003949717 vcf.gz 1.2 GB
EGAF00003949718 vcf.gz 1.9 GB
EGAF00003949719 vcf.gz 1.5 GB
EGAF00003949720 vcf.gz 1.6 GB
EGAF00003949721 vcf.gz 1.3 GB
EGAF00003949722 vcf.gz 808.1 MB
EGAF00003949723 vcf.gz 1.2 GB
EGAF00003949724 vcf.gz 827.9 MB
EGAF00003949725 vcf.gz 1.4 GB
124 Files (854.1 GB)