NABUCCO cohort 1 (NCT03387761) - Neo-Adjuvant Bladder Urothelial Carcinoma COmbination-immunotherapy
NABUCCO cohort 1 sequencing data. The dataset includes: * Whole exome DNAseq pre-treatment on tumor samples (n=24) matched with blood samples (n=24) * RNAseq pre-treatment on tumor samples (n=18) * RNAseq post-treatment on tumor samples (n=18). Not all pre-treatment samples are linked with pre-treatment samples * High coverage Whole exome DNAseq on pre-treatment tumor samples (n=3) matched with post-treatment metastasized lymph nodes isolated with laser microdissection (n=3) * All samples are labelled with the response phenotype (Complete Responder or Non-Complete Responder)
- 01/07/2020
- 69 samples
- DAC: EGAC00001001648
- Technology: Illumina HiSeq 2500
NKI data access policy
Data will be made available from the corresponding author on reasonable request for academic use and within the limitations of the provided informed consent by the corresponding author upon acceptance. Every request will be reviewed by the institutional review board of the NKI; the researcher will need to sign a data access agreement with the NKI after approval
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004521 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
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|---|---|---|---|---|
| EGAF00004168939 | bam | 956.0 MB | Report |
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| EGAF00004168940 | bam | 1.2 GB | Report |
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| EGAF00004168941 | bam | 556.7 MB | Report |
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| EGAF00004168942 | bam | 1.3 GB | Report |
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| EGAF00004168943 | bam | 845.7 MB | Report |
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| EGAF00004168944 | bam | 1.5 GB | Report |
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| EGAF00004168945 | bam | 1.7 GB | Report |
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| EGAF00004168946 | bam | 1.2 GB | Report |
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| EGAF00004168947 | bam | 1.2 GB | Report |
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| EGAF00004168948 | bam | 1.2 GB | Report |
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| EGAF00004168949 | bam | 654.1 MB | Report |
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| EGAF00004168950 | bam | 1.2 GB | Report |
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| EGAF00004168951 | bam | 1.1 GB | Report |
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| EGAF00004168952 | bam | 979.9 MB | Report |
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| EGAF00004168953 | bam | 1.4 GB | Report |
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| EGAF00004168954 | bam | 430.3 MB | Report |
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| EGAF00004168955 | bam | 400.8 MB | Report |
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| EGAF00004168956 | bam | 872.9 MB | Report |
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| EGAF00004168957 | bam | 784.0 MB | Report |
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| EGAF00004168958 | bam | 796.4 MB | Report |
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| EGAF00004168959 | bam | 1.2 GB | Report |
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| EGAF00004168960 | bam | 1.4 GB | Report |
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| EGAF00004168961 | bam | 1.1 GB | Report |
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| EGAF00004168962 | bam | 978.1 MB | Report |
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| EGAF00004168963 | bam | 1.6 GB | Report |
|
| EGAF00004168964 | bam | 946.6 MB | Report |
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| EGAF00004168965 | bam | 897.4 MB | Report |
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| EGAF00004168966 | bam | 880.4 MB | Report |
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| EGAF00004168967 | bam | 1.3 GB | Report |
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| EGAF00004168968 | bam | 1.2 GB | Report |
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| EGAF00004168969 | bam | 1.2 GB | Report |
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| EGAF00004168970 | bam | 738.9 MB | Report |
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| EGAF00004168971 | bam | 664.8 MB | Report |
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| EGAF00004168972 | bam | 5.1 GB | Report |
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| EGAF00004168973 | bam | 578.6 MB | Report |
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| EGAF00004168974 | bam | 955.4 MB | Report |
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| EGAF00004168975 | bam | 6.9 GB | Report |
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| EGAF00004168976 | bam | 7.9 GB | Report |
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| EGAF00004168977 | bam | 8.5 GB | Report |
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| EGAF00004168978 | bam | 6.9 GB | Report |
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| EGAF00004168979 | bam | 9.3 GB | Report |
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| EGAF00004168980 | bam | 6.2 GB | Report |
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| EGAF00004168981 | bam | 8.7 GB | Report |
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| EGAF00004168982 | bam | 5.0 GB | Report |
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| EGAF00004168983 | bam | 6.5 GB | Report |
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| EGAF00004168984 | bam | 4.7 GB | Report |
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| EGAF00004168985 | bam | 6.6 GB | Report |
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| EGAF00004168986 | bam | 9.3 GB | Report |
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| EGAF00004168987 | bam | 6.5 GB | Report |
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| EGAF00004168988 | bam | 8.2 GB | Report |
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| EGAF00004168989 | bam | 9.4 GB | Report |
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| EGAF00004168990 | bam | 7.3 GB | Report |
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| EGAF00004168991 | bam | 8.0 GB | Report |
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| EGAF00004168992 | bam | 8.5 GB | Report |
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| EGAF00004168993 | bam | 7.0 GB | Report |
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| EGAF00004168994 | bam | 8.0 GB | Report |
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| EGAF00004168995 | bam | 6.6 GB | Report |
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| EGAF00004168996 | bam | 6.8 GB | Report |
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| EGAF00004168997 | bam | 6.2 GB | Report |
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| EGAF00004168998 | bam | 6.6 GB | Report |
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| EGAF00004168999 | bam | 6.5 GB | Report |
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| EGAF00004169000 | bam | 7.0 GB | Report |
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| EGAF00004169001 | bam | 6.6 GB | Report |
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| EGAF00004169002 | bam | 7.9 GB | Report |
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| EGAF00004169003 | bam | 8.4 GB | Report |
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| EGAF00004169004 | bam | 9.1 GB | Report |
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| EGAF00004169005 | bam | 8.1 GB | Report |
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| EGAF00004169006 | bam | 6.5 GB | Report |
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| EGAF00004169007 | bam | 8.3 GB | Report |
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| EGAF00004169008 | bam | 6.7 GB | Report |
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| EGAF00004169009 | bam | 8.0 GB | Report |
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| EGAF00004169010 | bam | 7.0 GB | Report |
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| EGAF00004169011 | bam | 7.1 GB | Report |
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| EGAF00004169012 | bam | 6.7 GB | Report |
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| EGAF00004169013 | bam | 5.3 GB | Report |
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| EGAF00004169014 | bam | 5.5 GB | Report |
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| EGAF00004169015 | bam | 5.4 GB | Report |
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| EGAF00004169016 | bam | 6.4 GB | Report |
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| EGAF00004169017 | bam | 5.8 GB | Report |
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| EGAF00004169018 | bam | 5.5 GB | Report |
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| EGAF00004169019 | bam | 6.8 GB | Report |
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| EGAF00004169020 | bam | 21.4 GB | Report |
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| EGAF00004169021 | bam | 37.8 GB | Report |
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| EGAF00004169022 | bam | 27.1 GB | Report |
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| EGAF00004169023 | bam | 31.2 GB | Report |
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| EGAF00004169024 | bam | 33.5 GB | Report |
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| EGAF00004169025 | bam | 35.0 GB | Report |
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| EGAF00004169026 | bam | 7.6 GB | Report |
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| EGAF00004169027 | bam | 5.4 GB | Report |
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| EGAF00004169028 | bam | 6.0 GB | Report |
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| 90 Files (567.0 GB) | ||||