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Cell types of the human retina and its organoids at single-cell resolution. Cowan et al

Human organoids recapitulating the cell-type diversity and function of their target organ are valuable for basic and translational research. We developed light-sensitive human retinal organoids with multiple nuclear and synaptic layers, and functional synapses. We sequenced the RNA of 285,441 single cells from these organoids at seven developmental time points and from the periphery, fovea, pigment epithelium and choroid of light-responsive adult human retinas.

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Team controlling the access of the human retina and human retinal organoid data generated from the collaboration between IOB and Novartis and included in the paper Cowan et al., 2020 v03

DATA ACCESS AGREEMENT for Non-Profit Research Organizations This Agreement is made and is effective 1st of January 2021 between: Institute of Molecular and Clinical Ophthalmology Basel Mittlere Strasse 91 CH-4031 Basel (the Data Controller) and John Smith, MD PhD (the User) and Department of Ophthalmology School of Medicine The University of (the User Institution) This Agreement governs the terms on which access will be granted to the genotype data (generated by the Data Controller). In signing this agreement, the User and User-Institution are agreeing to be bound by the terms and conditions of access set out in this Agreement. I. Definitions: Data means all human genetic data from study ID EGAS00001004561 of the Data Controller User may access from the data base of the European Genome-phenome Archive (EGA). Data Controller means a natural or legal person which determines the purposes for which and the means by which the Data is processed. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. Consent of the Data Subject means any freely given, specific, informed and unambiguous indication of the data subject’s wishes by which he or she, by a statement or by a clear affirmative action, signifies agreement to the processing of personal data relating to him or her. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organisation at which the User is employed, affiliated or enrolled. User means a researcher to which the Data are disclosed and whose User Institution has completed this Data Access Agreement. For the sake of clarity, the terms of access set out in this Agreement apply both, to the User and the User’s institution (User Institution as defined herein). User Institution and User are both referred to within the Agreement as “User” and shall be construed accordingly. II. Terms and Conditions: In signing this Agreement: 1. The User agrees to use the Data only for the advancement of non-commercial medical research. 2. The User agrees to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, the User undertakes not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. The User agrees not to transfer or disclose the Data, in whole or part, or any material identifying or rendering Data Subjects identifiable, or any identifiable material derived from the Data, to third parties. Should the User wish to share the Data with a third party, that third party must make a separate application with the Data Controller for access to the Data. 4. User agrees not to undertake, incite or facilitate the re-identification of Data Subjects and will promptly and irrevocably delete any Data or material identifying or rendering Data Subjects identifiable. 5. The User agrees to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of the Data Controller and the relevant primary collectors and their funders. 6. The User accepts that the Data Controller (a) bear no legal responsibility for the accuracy or comprehensiveness or interpretation of the Data; and (b) accept no liability for damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason, whether in contract or torts, except that the Data Controller shall be liable to the User for damages to the extent such damages are caused by the gross negligence or willful misconduct of the Data Controller. No indemnification for any loss, claim, damage, or liability is intended or provided by any party under this agreement. 7. The User understands and acknowledges that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out the User’s research with the Data, or sale of all or part of the Data on any media is not permitted. 8. The User recognizes that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User has the right to develop intellectual property based on comparisons with their own data. 9. The User accepts that this agreement will terminate immediately upon any breach of this agreement by User, and User will be required to destroy any Data held. 10. The User accepts that it may be necessary for the Data Controller or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Data Controller or its appointed agent will contact the User to inform the User of any changes and the User agrees that the User’s continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 11. The User accepts that the Data is subject to laws for data protection and to rights granted thereunder to the Data Subject and that User is responsible for ensuring compliance with any such applicable law and rights claimed thereunder by the Data Subject. The Data Controller‘s Data Access Committee reserves the right to request data security and management documentation to ensure the adequacy of data protection measures. 12. The User will notify the Data Access Committee and the Data Controller as soon as it becomes aware of a breach of this agreement. 13. Articles 1 to 8 shall survive the termination of this agreement. [Signature page follows]   Signature page For and on behalf of User: _____________________________________ Signature _____________________________________ Print name _____________________________________ Date For and on behalf of User Institution: ______________________________________ Signature of Institutional or Administrative Authority ______________________________________ Print name: ______________________________________ Date:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004561 Other
  • policy updated
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004257399 bam 42.4 GB
EGAF00004257400 bam 41.3 GB
EGAF00004257401 bam 50.5 GB
EGAF00004257402 bam 59.5 GB
EGAF00004257403 bam 11.8 GB
EGAF00004257404 bam 11.9 GB
EGAF00004257405 bam 11.7 GB
EGAF00004257406 bam 11.6 GB
EGAF00004257407 bam 11.5 GB
EGAF00004257408 bam 24.7 GB
EGAF00004257409 bam 12.7 GB
EGAF00004257410 bam 11.1 GB
EGAF00004257411 bam 22.7 GB
EGAF00004257412 bam 10.7 GB
EGAF00004257413 bam 7.4 GB
EGAF00004257414 bam 6.1 GB
EGAF00004257415 bam 7.0 GB
EGAF00004257416 bam 14.0 GB
EGAF00004257417 bam 13.0 GB
EGAF00004257418 bam 11.0 GB
EGAF00004257419 bam 8.6 GB
EGAF00004257420 bam 12.2 GB
EGAF00004257421 bam 8.1 GB
EGAF00004257422 bam 4.8 GB
EGAF00004257423 bam 4.5 GB
EGAF00004257424 bam 4.1 GB
EGAF00004257425 bam 6.5 GB
EGAF00004257426 bam 7.7 GB
EGAF00004257427 bam 8.2 GB
EGAF00004257428 bam 8.3 GB
EGAF00004257429 bam 8.1 GB
EGAF00004257430 bam 8.6 GB
EGAF00004257431 bam 34.4 GB
EGAF00004257432 bam 37.8 GB
EGAF00004257433 bam 43.1 GB
EGAF00004257434 bam 31.1 GB
EGAF00004257435 bam 32.7 GB
EGAF00004257436 bam 34.6 GB
EGAF00004257437 bam 21.9 GB
EGAF00004257438 bam 31.9 GB
EGAF00004257439 bam 60.8 GB
EGAF00004257440 bam 44.7 GB
EGAF00004257441 bam 34.4 GB
EGAF00004257442 bam 37.9 GB
EGAF00004257443 bam 39.5 GB
EGAF00004257444 bam 24.5 GB
EGAF00004257445 bam 14.6 GB
EGAF00004257446 bam 6.3 GB
EGAF00004257447 bam 14.0 GB
EGAF00004257448 bam 6.3 GB
EGAF00004257449 bam 17.0 GB
EGAF00004257450 bam 9.1 GB
EGAF00004257451 bam 21.0 GB
EGAF00004257452 bam 7.5 GB
EGAF00004257453 bam 6.7 GB
EGAF00004257454 bam 7.7 GB
EGAF00004257455 bam 7.4 GB
EGAF00004257456 bam 6.7 GB
EGAF00004257457 bam 7.5 GB
EGAF00004257458 bam 3.6 GB
EGAF00004257459 bam 6.1 GB
EGAF00004257460 bam 9.4 GB
EGAF00004257461 bam 6.8 GB
EGAF00004257462 bam 7.2 GB
EGAF00004257463 bam 8.0 GB
EGAF00004257464 bam 12.0 GB
EGAF00004257465 bam 8.8 GB
EGAF00004257466 bam 4.8 GB
EGAF00004257467 bam 3.4 GB
EGAF00004257468 bam 5.1 GB
EGAF00004257469 bam 5.1 GB
EGAF00004257470 bam 4.3 GB
EGAF00004257471 bam 9.1 GB
EGAF00004257472 bam 10.7 GB
EGAF00004257473 bam 7.6 GB
EGAF00004257474 bam 6.9 GB
EGAF00004257475 bam 6.7 GB
EGAF00004257476 bam 6.2 GB
EGAF00004257477 bam 6.4 GB
EGAF00004257478 bam 8.8 GB
EGAF00004257543 bam 7.1 GB
EGAF00004257544 bam 7.6 GB
EGAF00004257545 bam 8.3 GB
EGAF00004257546 bam 7.1 GB
EGAF00004257547 bam 5.6 GB
EGAF00004257548 bam 6.4 GB
EGAF00004257549 bam 5.9 GB
EGAF00004257550 bam 7.0 GB
EGAF00004257551 bam 5.8 GB
EGAF00004257552 bam 7.5 GB
EGAF00004257553 bam 8.0 GB
EGAF00004257554 bam 7.2 GB
EGAF00004257555 bam 7.0 GB
EGAF00004257556 bam 8.5 GB
EGAF00004257557 bam 9.0 GB
EGAF00004257558 bam 5.5 GB
EGAF00004257559 bam 4.7 GB
EGAF00004257560 bam 5.7 GB
EGAF00004257561 bam 5.1 GB
EGAF00004257562 bam 6.0 GB
EGAF00004257563 bam 7.5 GB
EGAF00004257564 bam 12.0 GB
EGAF00004257565 bam 6.7 GB
EGAF00004257566 bam 11.8 GB
EGAF00004257567 bam 13.1 GB
EGAF00004257568 bam 9.2 GB
EGAF00004257569 bam 1.9 GB
EGAF00004257570 bam 14.0 GB
EGAF00004257571 bam 8.0 GB
EGAF00004257572 bam 9.4 GB
EGAF00004257573 bam 8.8 GB
EGAF00004257574 bam 5.2 GB
EGAF00004257575 bam 10.5 GB
EGAF00004257576 bam 3.3 GB
EGAF00004257577 bam 7.6 GB
EGAF00004257578 bam 4.7 GB
EGAF00004257579 bam 8.6 GB
EGAF00004257580 bam 8.4 GB
EGAF00004257581 bam 8.0 GB
EGAF00004257582 bam 15.6 GB
EGAF00004257583 bam 10.4 GB
EGAF00004257584 bam 18.0 GB
EGAF00004257585 bam 13.5 GB
EGAF00004257586 bam 12.2 GB
124 Files (1.6 TB)