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sWGS for genome-wide copy number profiling

Shallow whole-genome sequencing (sWGS) data for the identification of somatic copy number alterations (SCNA) and the estimation of tumor fractions in plasma DNA of metastatic colorectal cancer patients (mCRC).

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CTC - Plasma-DNA - MONDO:0005575

European Genome-Phenome Archivec/o European Bioinformatics InstituteWellcome Trust Genome CampusHinxtonCambridgeCB10 1SDUnited KingdomTo whom it may concern,This document refers to the study EGAS00001000337 which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Ellen Heitzer.There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by Ellen HeitzerEllen Heitzer is a Postdoctoral Fellow and is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Ellen Heitzer ( is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.Sincerely,Michael R. SpeicherPrinciple Investigator

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004491 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004671902 fastq.gz 257.6 MB
EGAF00004671903 fastq.gz 119.7 MB
EGAF00004671904 fastq.gz 311.8 MB
EGAF00004671905 fastq.gz 314.4 MB
EGAF00004671906 fastq.gz 307.5 MB
EGAF00004671907 fastq.gz 437.5 MB
EGAF00004671908 fastq.gz 1.1 GB
EGAF00004671909 fastq.gz 83.2 MB
EGAF00004671910 fastq.gz 838.1 MB
EGAF00004671911 fastq.gz 868.1 MB
EGAF00004671912 fastq.gz 185.6 MB
EGAF00004671913 fastq.gz 284.7 MB
EGAF00004671914 fastq.gz 756.9 MB
EGAF00004671915 fastq.gz 307.5 MB
EGAF00004671916 fastq.gz 273.2 MB
EGAF00004671917 fastq.gz 208.6 MB
EGAF00004671918 fastq.gz 187.6 MB
EGAF00004671919 fastq.gz 494.2 MB
EGAF00004671920 fastq.gz 760.8 MB
EGAF00004671921 fastq.gz 209.3 MB
EGAF00004671922 fastq.gz 268.6 MB
EGAF00004671923 fastq.gz 365.6 MB
EGAF00004671924 fastq.gz 338.8 MB
EGAF00004671925 fastq.gz 170.4 MB
EGAF00004671926 fastq.gz 601.1 MB
EGAF00004671927 fastq.gz 192.3 MB
EGAF00004671928 fastq.gz 195.9 MB
EGAF00004671929 fastq.gz 217.7 MB
EGAF00004671930 fastq.gz 365.6 MB
EGAF00004671931 fastq.gz 223.4 MB
EGAF00004671932 fastq.gz 134.7 MB
EGAF00004671933 fastq.gz 829.0 MB
EGAF00004671934 fastq.gz 214.6 MB
EGAF00004671935 fastq.gz 663.8 MB
EGAF00004671936 fastq.gz 68.5 MB
EGAF00004671937 fastq.gz 338.8 MB
EGAF00004671938 fastq.gz 102.7 MB
EGAF00004671939 fastq.gz 127.8 MB
EGAF00004671940 fastq.gz 235.5 MB
EGAF00004671941 fastq.gz 148.6 MB
EGAF00004671942 fastq.gz 213.6 MB
EGAF00004671943 fastq.gz 99.6 MB
EGAF00004671944 fastq.gz 840.8 MB
EGAF00004671945 fastq.gz 110.3 MB
EGAF00004671946 fastq.gz 483.8 MB
45 Files (15.9 GB)