Dataset

Whole exome sequencing of endometriod ovarian cancer tumours

Dataset ID Technology Samples
EGAD00001006389 NextSeq 550 112

Dataset Description

Whole Exome sequencing data of tumour samples for 112 patients with endometrioid ovarian carcinoma in FASTQ format. Data was derived as summarized below:

Library Preparation: Libraries were prepared from each DNA sample using the Illumina TruSeq Exome Library Prep kit (#FC-150-1002) according to the provided protocol using modifications for working with FFPE sourced material. Libraries were quantified using the Qubit 2.0 Fluorometer and the Qubit DNA HS assay (#Q32854) and the size distribution of fragments was assessed using the Agilent Bioanalyser with the DNA HS Kit (#5067-4626).
Library QC: Exome-captured sequencing library pools were quantified using the Qubit 2.0 Fluorometer and the Qubit DNA HS assay (#Q32854) and the size distribution of fragments was assessed using the Agilent Bioanalyser with the DNA HS Kit (#5067-4626). Fragment size and quantity measurements were used to calculate molarity for each library pool.
Sequencing: Sequencing was performed using the NextSeq 500/550 High-Output v2 (150 cycle) Kit (# FC-404-2002) on the NextSeq 550 ... (Show More)

Data Use Conditions

HMB PUB GS MOR US PS IS

See further information on Data Use Conditions

Label Code Version Modifier
health or medical or biomedical research DUO:0000006 2019-01-07
publication required DUO:0000019 2019-01-07
geographical restriction DUO:0000022 2019-01-07
publication moratorium DUO:0000024 2019-01-07
user specific restriction DUO:0000026 2019-01-07
project specific restriction DUO:0000027 2019-01-07
institution specific restriction DUO:0000028 2019-01-07