About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Short-read (RNA-seq)

The goal of this project was to perform long-read RNA sequencing (LR-seq, PacBio) in combination with short-read RNA-seq for systematic characterization of the isoform diversity in primary breast tumor samples. We sequenced the full-length transcriptomes of 26 breast tumors and 4 normal breast samples.

Request Access

This Data Access Agreement governs the terms on which access will be granted to the data in this submission which are available through the European Genome-phenome Archive (EGA) and provided by The Jackson Laboratory.

Process to obtain datasets generated by The Jackson Laboratory which are available through the European Genome-phenome Archive (EGA): Please submit your full name, supervisor's name if applicable, Institution's name and detailed research aims (internal non-commercial research) with your online request for review by the Data Access Committee (DAC). This dataset is governed by a Data Access Agreement which will be sent to your institutional email for review and signature by your Institution's Legal representative upon approval of your research aims by the DAC. Access will be granted to qualified researchers. Any questions, contact data_access@jax.org.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004819 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004842492 fastq.gz 3.7 GB Report
EGAF00004842493 fastq.gz 3.8 GB Report
EGAF00004842494 fastq.gz 3.8 GB Report
EGAF00004842495 fastq.gz 3.9 GB Report
EGAF00004842496 fastq.gz 4.3 GB Report
EGAF00004842497 fastq.gz 4.4 GB Report
EGAF00004842498 fastq.gz 7.6 GB Report
EGAF00004842499 fastq.gz 7.8 GB Report
EGAF00004842500 fastq.gz 2.6 GB Report
EGAF00004842501 fastq.gz 2.7 GB Report
EGAF00004842502 fastq.gz 2.7 GB Report
EGAF00004842503 fastq.gz 2.8 GB Report
EGAF00004842504 fastq.gz 629.2 MB Report
EGAF00004842505 fastq.gz 631.9 MB Report
EGAF00004842506 fastq.gz 1.2 GB Report
EGAF00004842507 fastq.gz 1.2 GB Report
EGAF00004842508 fastq.gz 1.7 GB Report
EGAF00004842509 fastq.gz 1.7 GB Report
EGAF00004842510 fastq.gz 1.1 GB Report
EGAF00004842511 fastq.gz 1.1 GB Report
EGAF00004842512 fastq.gz 2.7 GB Report
EGAF00004842513 fastq.gz 2.8 GB Report
EGAF00004842514 fastq.gz 2.0 GB Report
EGAF00004842515 fastq.gz 2.0 GB Report
EGAF00004842516 fastq.gz 1.4 GB Report
EGAF00004842517 fastq.gz 1.5 GB Report
EGAF00004842518 fastq.gz 2.8 GB Report
EGAF00004842519 fastq.gz 2.8 GB Report
EGAF00004842520 fastq.gz 1.4 GB Report
EGAF00004842521 fastq.gz 1.4 GB Report
EGAF00004842522 fastq.gz 1.4 GB Report
EGAF00004842523 fastq.gz 1.4 GB Report
EGAF00004842524 fastq.gz 2.6 GB Report
EGAF00004842525 fastq.gz 2.6 GB Report
EGAF00004842526 fastq.gz 2.5 GB Report
EGAF00004842527 fastq.gz 2.6 GB Report
EGAF00004842528 fastq.gz 2.4 GB Report
EGAF00004842529 fastq.gz 2.4 GB Report
EGAF00004842530 fastq.gz 2.5 GB Report
EGAF00004842531 fastq.gz 2.6 GB Report
EGAF00004842532 fastq.gz 2.6 GB Report
EGAF00004842533 fastq.gz 2.7 GB Report
EGAF00004842534 fastq.gz 1.4 GB Report
EGAF00004842535 fastq.gz 1.4 GB Report
EGAF00004842536 fastq.gz 1.8 GB Report
EGAF00004842537 fastq.gz 1.8 GB Report
EGAF00004842538 fastq.gz 3.0 GB Report
EGAF00004842539 fastq.gz 3.3 GB Report
EGAF00004842540 fastq.gz 1.8 GB Report
EGAF00004842541 fastq.gz 1.8 GB Report
EGAF00004842542 fastq.gz 2.1 GB Report
EGAF00004842543 fastq.gz 2.2 GB Report
EGAF00004842544 fastq.gz 1.9 GB Report
EGAF00004842545 fastq.gz 1.9 GB Report
EGAF00004842546 fastq.gz 1.7 GB Report
EGAF00004842547 fastq.gz 1.7 GB Report
EGAF00004842548 fastq.gz 1.8 GB Report
EGAF00004842549 fastq.gz 1.8 GB Report
58 Files (140.2 GB)