Transcriptomic intra-tumor heterogeneity of colorectal cancer evaluated by RNA sequencing of multi-regional biopsies
RNA sequencing of a total of 41 tumor biopsies taken from a total of 14 patients with colorectal cancer. Ribosomal RNA was removed using the Ribo-Zero Gold rRNA Removal Kit (Illumina, CA, USA) and Paired-end sequencing were performed using ScriptSeq v2 RNA-seq Library preparation Kit (Illumina). Data processing of the paired raw sequence reads was performed using TopHat2, with mapping to the human reference genome HG19. Forty-one BAM files with reads mapping the the human reference genome (HG19) is enclosed.
- 24/11/2020
- 41 samples
- DAC: EGAC00001000145
- Technology: NextSeq 500
DUO:0000027 version: 2019-01-07
project specific restriction
This data use modifier indicates that use is limited to use within an approved project.
MOMA colorectal cancer research group data access policy
The signing of a Data Access Agreement (DAA) and Data Access Application Form (DAAF) as well as application to and approval by Danish authorities are required to gain access to the data of the study. A DAA, DAFF and guidance on this matter is available upon request to the MOMA Data Access Committee (DAC; EGAC00001000145)
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001004668 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00004890490 | bam | 10.1 GB | Report |
|
| EGAF00004890491 | bam | 4.5 GB | Report |
|
| EGAF00004890492 | bam | 3.1 GB | Report |
|
| EGAF00004890493 | bam | 3.9 GB | Report |
|
| EGAF00004890494 | bam | 4.1 GB | Report |
|
| EGAF00004890495 | bam | 6.0 GB | Report |
|
| EGAF00004890496 | bam | 6.4 GB | Report |
|
| EGAF00004890497 | bam | 5.7 GB | Report |
|
| EGAF00004890498 | bam | 11.3 GB | Report |
|
| EGAF00004890499 | bam | 6.2 GB | Report |
|
| EGAF00004890500 | bam | 3.3 GB | Report |
|
| EGAF00004890501 | bam | 4.5 GB | Report |
|
| EGAF00004890502 | bam | 2.7 GB | Report |
|
| EGAF00004890503 | bam | 4.6 GB | Report |
|
| EGAF00004890504 | bam | 6.6 GB | Report |
|
| EGAF00004890505 | bam | 5.3 GB | Report |
|
| EGAF00004890506 | bam | 5.5 GB | Report |
|
| EGAF00004890507 | bam | 4.1 GB | Report |
|
| EGAF00004890508 | bam | 5.6 GB | Report |
|
| EGAF00004890509 | bam | 5.4 GB | Report |
|
| EGAF00004890510 | bam | 6.6 GB | Report |
|
| EGAF00004890511 | bam | 7.3 GB | Report |
|
| EGAF00004890512 | bam | 4.6 GB | Report |
|
| EGAF00004890513 | bam | 5.0 GB | Report |
|
| EGAF00004890514 | bam | 6.0 GB | Report |
|
| EGAF00004890515 | bam | 5.3 GB | Report |
|
| EGAF00004890516 | bam | 5.5 GB | Report |
|
| EGAF00004890517 | bam | 6.1 GB | Report |
|
| EGAF00004890518 | bam | 4.5 GB | Report |
|
| EGAF00004890519 | bam | 5.6 GB | Report |
|
| EGAF00004890520 | bam | 5.5 GB | Report |
|
| EGAF00004890521 | bam | 5.4 GB | Report |
|
| EGAF00004890522 | bam | 6.2 GB | Report |
|
| EGAF00004890523 | bam | 6.6 GB | Report |
|
| EGAF00004890524 | bam | 4.0 GB | Report |
|
| EGAF00004890525 | bam | 6.5 GB | Report |
|
| EGAF00004890526 | bam | 6.5 GB | Report |
|
| EGAF00004890527 | bam | 6.2 GB | Report |
|
| EGAF00004890528 | bam | 4.7 GB | Report |
|
| EGAF00004890529 | bam | 6.2 GB | Report |
|
| EGAF00004890530 | bam | 7.6 GB | Report |
|
| 41 Files (230.9 GB) | ||||