About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RA-Map Early Rheumatoid Arthritis patient genotyping (InfiniumCoreExome-24-v1)

Genotyping of 244 early RA patients and 44 vaccine recipient controls was performed using the Illumina InfiniumCoreExome-24-v1-1 according to the manufacturer’s SOP. Raw idats from the Illumina iScan instrument were imported into GenomeStudio (v2011.1). Samples < 90 % call rate were excluded. Data was exported to PLINK PED/MAP format on the forward strand. Data was converted from PED/MAP to BED/BIM/FAM using PLINK v1.07.

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DUO:0000005
version: 2019-01-07

general research use and clinical care

This data use limitation indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry.

DUO:0000014
version: 2019-01-07

research use only

This data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).

DUO:0000019
version: 2019-01-07

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000028
version: 2019-01-07

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Data provided is on condition of full attribution of the RA-Map consortium in acknowledgment, in adherence to the RA-MAP Consortium’s publication policy. Data should not be passed to third parties, all results relating to RA-Map subjects should be shared with the RA-MAP consortium.

Data provided is on condition of full attribution of the RA-Map consortium in acknowledgment, in adherence to the RA-MAP Consortium’s publication policy. Data should not be passed to third parties, all results relating to RA-Map subjects should be shared with the RA-MAP consortium. RA-MAP Consortium’s publication policy All publications relating to this data should include the following acknowledgement "genotype data was funded by the MRC/ABPI Inflammation and Immunology Initiative Grant (MRC reference numbers: G1001516 and G1001518).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004424 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00004940658 vcf 232.6 MB
1 File (232.6 MB)