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RA-Map Early Rheumatoid Arthritis patient genotyping (InfiniumCoreExome-24-v1)

Genotyping of 244 early RA patients and 44 vaccine recipient controls was performed using the Illumina InfiniumCoreExome-24-v1-1 according to the manufacturer’s SOP. Raw idats from the Illumina iScan instrument were imported into GenomeStudio (v2011.1). Samples < 90 % call rate were excluded. Data was exported to PLINK PED/MAP format on the forward strand. Data was converted from PED/MAP to BED/BIM/FAM using PLINK v1.07.

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Data provided is on condition of full attribution of the RA-Map consortium in acknowledgment, in adherence to the RA-MAP Consortium’s publication policy. Data should not be passed to third parties, all results relating to RA-Map subjects should be shared with the RA-MAP consortium.

Data provided is on condition of full attribution of the RA-Map consortium in acknowledgment, in adherence to the RA-MAP Consortium’s publication policy. Data should not be passed to third parties, all results relating to RA-Map subjects should be shared with the RA-MAP consortium. RA-MAP Consortium’s publication policy All publications relating to this data should include the following acknowledgement "genotype data was funded by the MRC/ABPI Inflammation and Immunology Initiative Grant (MRC reference numbers: G1001516 and G1001518).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004424 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00004940658 vcf 232.6 MB
1 File (232.6 MB)