Illumina 5'end RNA sequencing

The dataset contains 200 fastq files of Illumina 5'end RNA sequencing data of 50 PBMC samples. The paired-end data includes 100 fastq files (R1 and R2) of 50 full-length cDNA sequencing libraries and 100 fastq files (R1 and R2) of 50 HLA amplicon sequencing libraries.

100 samples
DAC: EGAC00001001888
Technology: NextSeq 550

Access Policy1 Study Files

Metadata

Request Access

RU DUO:0000014 (version: 2019-01-07)research use onlyThis data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).
NPUNCU DUO:0000018 (version: 2019-01-07)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
COL DUO:0000020 (version: 2019-01-07)collaboration requiredThis data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).
US DUO:0000026 (version: 2019-01-07)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
PS DUO:0000027 (version: 2019-01-07)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.

The terms and conditions defined in the policy govern access to the managed HLA RNAseq dataset.

1. Definitions Authorized Personnel: The individuals at the User Institution to whom FRCBS grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorized Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data may include personal data as defined in the EU General Data Protection Regulation (2016/679) (“GDPR”). Data Producers: FRCBS and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: non-commercial research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project at the User Institution 2. Terms and Conditions 2.1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2.2. The User Institution agrees to use all reasonable efforts to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 2.3. The User Institution agrees to use reasonable efforts to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking reasonable care to limit the possibility of identification. 2.4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 2.5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 2.6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. Notwithstanding the above, the User Institution will not be responsible for claims arising from or related to the negligence or willful misconduct of the Data Producers, other parties involved in the creation, funding or protection of these Data, or their officers, agents or employees, or any person or entity not subject to User Institution’s supervision or control. 2.7. The User Institution agrees to follow the Fort Lauderdale Guidelines (attached as Appendix IV) and the Toronto Statement (as attached in Appendix III). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 2.8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 2.9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data. 2.10. The User Institution can elect to perform further research that would add intellectual and resource capital to these Data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further non-commercial research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (attached as Appendix V ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (attached as Appendix VI). 2.11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the Data for archival purposes in conformity with audit or legal requirements. 2.12. The User Institution will notify FRCBS within 30 days of any changes or departures of Authorized Personnel. 2.13. The User Institution will notify FRCBS prior to any significant changes to the protocol for the Project. 2.14. The User Institution will promptly notify FRCBS should it become aware of a breach of the terms or conditions of this agreement. 2.15. Either Party may terminate this agreement for any reason by provided thirty (30) days prior written notice to the other Party. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. Any such changes shall be implemented upon execution of a dually signed amendment to this Agreement. 2.16. If requested, upon advance written notice, and to the extent necessary, during mutually agreeable normal administrative business hours the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. Any such visits shall be scheduled in coordination with User Institution, and shall be subject to compliance with User Institution’s reasonable measures for confidentiality, safety and security, and shall also be subject to compliance with generally applicable premises rules at User Institution. 2.17. The User Institution agrees to distribute a copy of these terms to the Authorized Personnel. The User Institution will require that the Authorized Personnel comply with the terms of this agreement. 2.18. The User Institution understands that upon receipt of the Data that includes or constitutes Personal Data, it will become a data controller as meant in the General Data Protection Regulation (2016/679) (“GDPR”). 2.19. IF THE USER INSTITUTION IS NOT LOCATED WITHIN THE EEA / A COUNTRY WITH AN ADEQUACY DECISION: As a data controller, the User Institution shall comply with, the terms and conditions set out in the Controller-Controller Standard Contractual Clauses appended to this Agreement as Appendix VII. In case of discrepancy between the provisions of Appendix VII and any other document included in this Agreement and/or its appendices, the provision included in Appendix VII shall prevail. 2.20 FRCBS or its representative may at any moment inform the User Institution of a Research Participant withdrawing their consent or exercising their rights as a data subject under the GDPR. The User Institution shall perform all actions necessary in order to fulfil the rights of the Research Participant. 2.21 This Agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Finland and shall be subject to the exclusive jurisdiction of the Finnish courts. 2.22 This Agreement may be executed in counterparts, each and every one of which shall be deemed an original and all of which together shall constitute one and the same instrument. Each party may execute the Agreement in Adobe Portable Document Format (PDF) sent by electronic mail or as otherwise agreed between the parties. PDF signatures of authorised signatories of the parties shall be deemed to be original signatures, shall be valid and binding upon the parties, and, upon delivery, shall constitute due execution of this Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001004931	Illumina RNA sequencing for HLA expression qauntification	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00004963710	fastq.gz	34.0 MB
EGAF00004963711	fastq.gz	63.6 MB
EGAF00004963712	fastq.gz	27.4 MB
EGAF00004963713	fastq.gz	52.0 MB
EGAF00004963714	fastq.gz	21.9 MB
EGAF00004963715	fastq.gz	41.3 MB
EGAF00004963716	fastq.gz	1.0 MB
EGAF00004963717	fastq.gz	2.1 MB
EGAF00004963718	fastq.gz	20.6 MB
EGAF00004963719	fastq.gz	37.3 MB
EGAF00004963720	fastq.gz	805.7 kB
EGAF00004963721	fastq.gz	1.5 MB
EGAF00004963722	fastq.gz	1.2 MB
EGAF00004963723	fastq.gz	2.2 MB
EGAF00004963724	fastq.gz	734.2 kB
EGAF00004963725	fastq.gz	1.4 MB
EGAF00004963726	fastq.gz	1.7 MB
EGAF00004963727	fastq.gz	3.3 MB
EGAF00004963728	fastq.gz	21.6 MB
EGAF00004963729	fastq.gz	39.6 MB
EGAF00004963730	fastq.gz	21.0 MB
EGAF00004963731	fastq.gz	38.4 MB
EGAF00004963732	fastq.gz	1.2 MB
EGAF00004963733	fastq.gz	2.2 MB
EGAF00004963734	fastq.gz	41.9 MB
EGAF00004963735	fastq.gz	75.1 MB
EGAF00004963736	fastq.gz	707.0 kB
EGAF00004963737	fastq.gz	1.4 MB
EGAF00004963738	fastq.gz	665.6 kB
EGAF00004963739	fastq.gz	1.3 MB
EGAF00004963740	fastq.gz	34.4 MB
EGAF00004963741	fastq.gz	63.1 MB
EGAF00004963742	fastq.gz	36.8 MB
EGAF00004963743	fastq.gz	69.8 MB
EGAF00004963744	fastq.gz	42.3 MB
EGAF00004963745	fastq.gz	76.1 MB
EGAF00004963746	fastq.gz	19.3 MB
EGAF00004963747	fastq.gz	35.9 MB
EGAF00004963748	fastq.gz	1.8 MB
EGAF00004963749	fastq.gz	3.4 MB
EGAF00004963750	fastq.gz	32.6 MB
EGAF00004963751	fastq.gz	60.3 MB
EGAF00004963752	fastq.gz	1.5 MB
EGAF00004963753	fastq.gz	2.9 MB
EGAF00004963754	fastq.gz	45.2 MB
EGAF00004963755	fastq.gz	81.7 MB
EGAF00004963756	fastq.gz	451.0 kB
EGAF00004963757	fastq.gz	852.8 kB
EGAF00004963758	fastq.gz	1.2 MB
EGAF00004963759	fastq.gz	2.2 MB
EGAF00004963760	fastq.gz	32.4 MB
EGAF00004963761	fastq.gz	58.7 MB
EGAF00004963762	fastq.gz	52.2 MB
EGAF00004963763	fastq.gz	96.8 MB
EGAF00004963764	fastq.gz	31.5 MB
EGAF00004963765	fastq.gz	58.9 MB
EGAF00004963766	fastq.gz	12.5 MB
EGAF00004963767	fastq.gz	23.4 MB
EGAF00004963768	fastq.gz	77.3 MB
EGAF00004963769	fastq.gz	138.4 MB
EGAF00004963770	fastq.gz	3.1 MB
EGAF00004963771	fastq.gz	5.9 MB
EGAF00004963772	fastq.gz	325.2 kB
EGAF00004963773	fastq.gz	618.2 kB
EGAF00004963774	fastq.gz	25.4 MB
EGAF00004963775	fastq.gz	48.4 MB
EGAF00004963776	fastq.gz	29.5 MB
EGAF00004963777	fastq.gz	54.4 MB
EGAF00004963778	fastq.gz	714.8 kB
EGAF00004963779	fastq.gz	1.3 MB
EGAF00004963780	fastq.gz	18.9 MB
EGAF00004963781	fastq.gz	36.2 MB
EGAF00004963782	fastq.gz	31.1 MB
EGAF00004963783	fastq.gz	56.7 MB
EGAF00004963784	fastq.gz	33.8 MB
EGAF00004963785	fastq.gz	63.4 MB
EGAF00004963786	fastq.gz	1.1 MB
EGAF00004963787	fastq.gz	2.0 MB
EGAF00004963788	fastq.gz	681.5 kB
EGAF00004963789	fastq.gz	1.3 MB
EGAF00004963790	fastq.gz	1.3 MB
EGAF00004963791	fastq.gz	2.5 MB
EGAF00004963792	fastq.gz	31.3 MB
EGAF00004963793	fastq.gz	58.9 MB
EGAF00004963794	fastq.gz	2.1 MB
EGAF00004963795	fastq.gz	4.0 MB
EGAF00004963796	fastq.gz	620.1 kB
EGAF00004963797	fastq.gz	1.2 MB
EGAF00004963798	fastq.gz	25.5 MB
EGAF00004963799	fastq.gz	46.9 MB
EGAF00004963800	fastq.gz	19.7 MB
EGAF00004963801	fastq.gz	37.4 MB
EGAF00004963802	fastq.gz	610.1 kB
EGAF00004963803	fastq.gz	1.2 MB
EGAF00004963804	fastq.gz	20.0 MB
EGAF00004963805	fastq.gz	36.3 MB
EGAF00004963806	fastq.gz	2.1 MB
EGAF00004963807	fastq.gz	4.0 MB
EGAF00004963808	fastq.gz	902.0 kB
EGAF00004963809	fastq.gz	1.7 MB
EGAF00004963810	fastq.gz	869.0 kB
EGAF00004963811	fastq.gz	1.7 MB
EGAF00004963812	fastq.gz	24.4 MB
EGAF00004963813	fastq.gz	46.7 MB
EGAF00004963814	fastq.gz	667.9 kB
EGAF00004963815	fastq.gz	1.2 MB
EGAF00004963816	fastq.gz	974.3 kB
EGAF00004963817	fastq.gz	1.9 MB
EGAF00004963818	fastq.gz	51.9 MB
EGAF00004963819	fastq.gz	94.3 MB
EGAF00004963820	fastq.gz	2.1 MB
EGAF00004963821	fastq.gz	3.9 MB
EGAF00004963822	fastq.gz	16.7 MB
EGAF00004963823	fastq.gz	31.1 MB
EGAF00004963824	fastq.gz	27.1 MB
EGAF00004963825	fastq.gz	48.5 MB
EGAF00004963826	fastq.gz	970.8 kB
EGAF00004963827	fastq.gz	1.9 MB
EGAF00004963828	fastq.gz	1.0 MB
EGAF00004963829	fastq.gz	1.9 MB
EGAF00004963830	fastq.gz	11.6 MB
EGAF00004963831	fastq.gz	21.7 MB
EGAF00004963832	fastq.gz	2.1 MB
EGAF00004963833	fastq.gz	4.0 MB
EGAF00004963834	fastq.gz	1.0 MB
EGAF00004963835	fastq.gz	2.0 MB
EGAF00004963836	fastq.gz	660.1 kB
EGAF00004963837	fastq.gz	1.3 MB
EGAF00004963838	fastq.gz	21.3 MB
EGAF00004963839	fastq.gz	40.8 MB
EGAF00004963840	fastq.gz	38.4 MB
EGAF00004963841	fastq.gz	71.9 MB
EGAF00004963842	fastq.gz	790.0 kB
EGAF00004963843	fastq.gz	1.5 MB
EGAF00004963844	fastq.gz	689.1 kB
EGAF00004963845	fastq.gz	1.3 MB
EGAF00004963846	fastq.gz	5.3 MB
EGAF00004963847	fastq.gz	9.7 MB
EGAF00004963848	fastq.gz	89.9 MB
EGAF00004963849	fastq.gz	164.5 MB
EGAF00004963850	fastq.gz	1.4 MB
EGAF00004963851	fastq.gz	2.8 MB
EGAF00004963852	fastq.gz	36.5 MB
EGAF00004963853	fastq.gz	66.6 MB
EGAF00004963854	fastq.gz	14.6 MB
EGAF00004963855	fastq.gz	26.6 MB
EGAF00004963856	fastq.gz	701.8 kB
EGAF00004963857	fastq.gz	1.3 MB
EGAF00004963858	fastq.gz	654.8 kB
EGAF00004963859	fastq.gz	1.3 MB
EGAF00004963860	fastq.gz	776.3 kB
EGAF00004963861	fastq.gz	1.5 MB
EGAF00004963862	fastq.gz	574.2 kB
EGAF00004963863	fastq.gz	1.1 MB
EGAF00004963864	fastq.gz	14.6 MB
EGAF00004963865	fastq.gz	28.1 MB
EGAF00004963866	fastq.gz	29.0 MB
EGAF00004963867	fastq.gz	55.6 MB
EGAF00004963868	fastq.gz	767.7 kB
EGAF00004963869	fastq.gz	1.5 MB
EGAF00004963870	fastq.gz	27.8 MB
EGAF00004963871	fastq.gz	50.2 MB
EGAF00004963872	fastq.gz	1.3 MB
EGAF00004963873	fastq.gz	2.5 MB
EGAF00004963874	fastq.gz	16.0 MB
EGAF00004963875	fastq.gz	29.4 MB
EGAF00004963876	fastq.gz	31.3 MB
EGAF00004963877	fastq.gz	55.7 MB
EGAF00004963878	fastq.gz	795.3 kB
EGAF00004963879	fastq.gz	1.5 MB
EGAF00004963880	fastq.gz	21.1 MB
EGAF00004963881	fastq.gz	39.3 MB
EGAF00004963882	fastq.gz	52.9 MB
EGAF00004963883	fastq.gz	96.8 MB
EGAF00004963884	fastq.gz	68.8 MB
EGAF00004963885	fastq.gz	121.5 MB
EGAF00004963886	fastq.gz	45.1 MB
EGAF00004963887	fastq.gz	85.6 MB
EGAF00004963888	fastq.gz	691.3 kB
EGAF00004963889	fastq.gz	1.3 MB
EGAF00004963890	fastq.gz	24.1 MB
EGAF00004963891	fastq.gz	44.2 MB
EGAF00004963892	fastq.gz	22.1 MB
EGAF00004963893	fastq.gz	40.3 MB
EGAF00004963894	fastq.gz	615.6 kB
EGAF00004963895	fastq.gz	1.2 MB
EGAF00004963896	fastq.gz	642.4 kB
EGAF00004963897	fastq.gz	1.2 MB
EGAF00004963898	fastq.gz	859.2 kB
EGAF00004963899	fastq.gz	1.6 MB
EGAF00004963900	fastq.gz	1.8 MB
EGAF00004963901	fastq.gz	3.4 MB
EGAF00004963902	fastq.gz	442.1 kB
EGAF00004963903	fastq.gz	843.5 kB
EGAF00004963904	fastq.gz	1.2 MB
EGAF00004963905	fastq.gz	2.2 MB
EGAF00004963906	fastq.gz	2.3 MB
EGAF00004963907	fastq.gz	4.2 MB
EGAF00004963908	fastq.gz	812.4 kB
EGAF00004963909	fastq.gz	1.6 MB
200 Files (4.5 GB)