CONTAGIOUS trial - COVID-19 16S dataset

16S amplicon data of nasopharyngeal swabs in a COVID-19 cohort recruited at UZ Leuven. The dataset contains a single experiment, comprising 150 runs corresponding to 125 unique samples. Runs comprise paired fastq files (2*250 bases) obtained from an Illumina MiSeq instrument.

12/01/2021
125 samples
DAC: EGAC00001001901
Technology: Illumina MiSeq

Access Policy1 Study Files

Metadata

Request Access

DUO:0000027
version: 2019-01-07

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000042
version: 2019-01-07

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

EC protocol data transfer

From the approved protocol by the Ethics Committee at UZ Leuven: Any participant records or datasets that are transferred to the Sponsor or any partners of the Sponsor will contain the Trial-specific participant identifier only; participant names or any information which would make the participant identifiable will not be transferred. All pseudonymized data relating to the Trial must be transmitted in a secure manner to the Sponsor. All source data will be kept at a secured location with restricted access at all times. These data must be collected and processed with adequate precautions to ensure confidentiality and compliance with applicable data protection laws and regulations and more in particular the EU General Data Protection Regulation 2016/679 (GDPR) and relevant national laws implementing the GDPR. Appropriate technical and organizational measures to protect the data against unauthorized disclosure or access, accidental or unlawful destruction, or accidental loss or alteration must be established. Trial staff whose responsibilities require access to personal data agree to keep the data confidential. The Investigator and the Participating Site(s) (as applicable) shall treat all information and data relating to the Trial disclosed to them as confidential and shall not disclose such information to any third parties or use such information for any purpose other than the objectives of the Trial as described in this protocol. The collection, processing and disclosure of personal data, such as participant health and medical information is subject to compliance with applicable laws and regulations regarding personal data protection and the processing of personal data. The Investigator will maintain all source documents and completed (e)CRFs that support the data collected from each Trial participant, and will maintain a Trial Master File (TMF)/Investigator Site File (ISF) containing all Trial documents as specified in ICH-GCP E6(R2) Chapter 8 entitled “Essential Documents for the Conduct of a Clinical Trial”, and as specified by applicable regulatory requirement(s). The Investigator will take appropriate measures to prevent accidental or premature destruction of these documents. Transfer of the pseudonymized data will be performed via a secured method of transfer taking into account all applicable security arrangements and regulations (such as the European General Data Protection Regulation). The receiving party will be bound by contractual agreement to keep the transferred data confidential at all times and to only process the data for the purpose of the Trial. To this end, appropriate Data Transfer Agreements (DTAs) will be established.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001004951	Upper respiratory microbiome of COVID-19 patients	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00004969300	fq.gz	6.6 MB	Report
EGAF00004969301	fq.gz	4.9 MB	Report
EGAF00004969302	fq.gz	3.8 MB	Report
EGAF00004969303	fq.gz	2.8 MB	Report
EGAF00004969304	fq.gz	6.4 MB	Report
EGAF00004969305	fq.gz	4.6 MB	Report
EGAF00004969306	fq.gz	6.6 MB	Report
EGAF00004969307	fq.gz	4.8 MB	Report
EGAF00004969308	fq.gz	7.8 MB	Report
EGAF00004969309	fq.gz	5.6 MB	Report
EGAF00004969310	fq.gz	6.6 MB	Report
EGAF00004969311	fq.gz	4.5 MB	Report
EGAF00004969312	fq.gz	1.8 MB	Report
EGAF00004969313	fq.gz	1.4 MB	Report
EGAF00004969314	fq.gz	6.2 MB	Report
EGAF00004969315	fq.gz	4.3 MB	Report
EGAF00004969316	fq.gz	176.5 kB	Report
EGAF00004969317	fq.gz	130.5 kB	Report
EGAF00004969318	fq.gz	6.3 MB	Report
EGAF00004969319	fq.gz	4.3 MB	Report
EGAF00004969320	fq.gz	6.8 MB	Report
EGAF00004969321	fq.gz	4.8 MB	Report
EGAF00004969322	fq.gz	8.7 MB	Report
EGAF00004969323	fq.gz	6.1 MB	Report
EGAF00004969324	fq.gz	4.8 MB	Report
EGAF00004969325	fq.gz	3.1 MB	Report
EGAF00004969326	fq.gz	4.0 MB	Report
EGAF00004969327	fq.gz	3.0 MB	Report
EGAF00004969328	fq.gz	1.8 MB	Report
EGAF00004969329	fq.gz	1.4 MB	Report
EGAF00004969330	fq.gz	5.5 MB	Report
EGAF00004969331	fq.gz	4.0 MB	Report
EGAF00004969332	fq.gz	6.6 MB	Report
EGAF00004969333	fq.gz	3.9 MB	Report
EGAF00004969334	fq.gz	10.1 MB	Report
EGAF00004969335	fq.gz	8.5 MB	Report
EGAF00004969336	fq.gz	5.4 MB	Report
EGAF00004969337	fq.gz	3.8 MB	Report
EGAF00004969338	fq.gz	8.5 MB	Report
EGAF00004969339	fq.gz	5.3 MB	Report
EGAF00004969340	fq.gz	5.6 MB	Report
EGAF00004969341	fq.gz	4.1 MB	Report
EGAF00004969342	fq.gz	4.9 MB	Report
EGAF00004969343	fq.gz	3.5 MB	Report
EGAF00004969344	fq.gz	2.6 MB	Report
EGAF00004969345	fq.gz	1.9 MB	Report
EGAF00004969346	fq.gz	5.1 MB	Report
EGAF00004969347	fq.gz	3.8 MB	Report
EGAF00004969348	fq.gz	5.1 MB	Report
EGAF00004969349	fq.gz	3.3 MB	Report
EGAF00004969350	fq.gz	792.4 kB	Report
EGAF00004969351	fq.gz	609.4 kB	Report
EGAF00004969352	fq.gz	5.1 MB	Report
EGAF00004969353	fq.gz	3.3 MB	Report
EGAF00004969354	fq.gz	4.8 MB	Report
EGAF00004969355	fq.gz	3.5 MB	Report
EGAF00004969356	fq.gz	4.7 MB	Report
EGAF00004969357	fq.gz	3.5 MB	Report
EGAF00004969358	fq.gz	4.1 MB	Report
EGAF00004969359	fq.gz	4.0 MB	Report
EGAF00004969360	fq.gz	5.3 MB	Report
EGAF00004969361	fq.gz	4.2 MB	Report
EGAF00004969362	fq.gz	7.1 MB	Report
EGAF00004969363	fq.gz	4.2 MB	Report
EGAF00004969364	fq.gz	3.9 MB	Report
EGAF00004969365	fq.gz	2.5 MB	Report
EGAF00004969366	fq.gz	5.4 MB	Report
EGAF00004969367	fq.gz	4.1 MB	Report
EGAF00004969368	fq.gz	6.9 MB	Report
EGAF00004969369	fq.gz	5.2 MB	Report
EGAF00004969370	fq.gz	6.8 MB	Report
EGAF00004969371	fq.gz	4.8 MB	Report
EGAF00004969372	fq.gz	6.7 MB	Report
EGAF00004969373	fq.gz	4.7 MB	Report
EGAF00004969374	fq.gz	1.9 MB	Report
EGAF00004969375	fq.gz	1.4 MB	Report
EGAF00004969376	fq.gz	6.5 MB	Report
EGAF00004969377	fq.gz	4.9 MB	Report
EGAF00004969378	fq.gz	7.9 MB	Report
EGAF00004969379	fq.gz	5.6 MB	Report
EGAF00004969380	fq.gz	3.4 MB	Report
EGAF00004969381	fq.gz	2.6 MB	Report
EGAF00004969382	fq.gz	4.5 MB	Report
EGAF00004969383	fq.gz	3.8 MB	Report
EGAF00004969384	fq.gz	5.8 MB	Report
EGAF00004969385	fq.gz	4.3 MB	Report
EGAF00004969386	fq.gz	4.0 MB	Report
EGAF00004969387	fq.gz	2.9 MB	Report
EGAF00004969388	fq.gz	5.1 MB	Report
EGAF00004969389	fq.gz	3.8 MB	Report
EGAF00004969390	fq.gz	7.7 MB	Report
EGAF00004969391	fq.gz	5.4 MB	Report
EGAF00004969392	fq.gz	7.1 MB	Report
EGAF00004969393	fq.gz	5.3 MB	Report
EGAF00004969394	fq.gz	6.0 MB	Report
EGAF00004969395	fq.gz	5.4 MB	Report
EGAF00004969396	fq.gz	10.6 MB	Report
EGAF00004969397	fq.gz	8.3 MB	Report
EGAF00004969398	fq.gz	7.7 MB	Report
EGAF00004969399	fq.gz	5.6 MB	Report
EGAF00004969400	fq.gz	5.0 MB	Report
EGAF00004969401	fq.gz	3.5 MB	Report
EGAF00004969402	fq.gz	6.1 MB	Report
EGAF00004969403	fq.gz	4.8 MB	Report
EGAF00004969404	fq.gz	4.1 MB	Report
EGAF00004969405	fq.gz	3.0 MB	Report
EGAF00004969406	fq.gz	7.1 MB	Report
EGAF00004969407	fq.gz	6.3 MB	Report
EGAF00004969408	fq.gz	708.2 kB	Report
EGAF00004969409	fq.gz	552.0 kB	Report
EGAF00004969410	fq.gz	5.8 MB	Report
EGAF00004969411	fq.gz	3.9 MB	Report
EGAF00004969412	fq.gz	22.2 MB	Report
EGAF00004969413	fq.gz	12.7 MB	Report
EGAF00004969414	fq.gz	4.1 MB	Report
EGAF00004969415	fq.gz	3.1 MB	Report
EGAF00004969416	fq.gz	4.4 MB	Report
EGAF00004969417	fq.gz	3.3 MB	Report
EGAF00004969418	fq.gz	6.9 MB	Report
EGAF00004969419	fq.gz	4.7 MB	Report
EGAF00004969420	fq.gz	6.9 MB	Report
EGAF00004969421	fq.gz	4.2 MB	Report
EGAF00004969422	fq.gz	4.5 MB	Report
EGAF00004969423	fq.gz	3.4 MB	Report
EGAF00004969424	fq.gz	3.0 MB	Report
EGAF00004969425	fq.gz	2.3 MB	Report
EGAF00004969426	fq.gz	5.1 MB	Report
EGAF00004969427	fq.gz	3.8 MB	Report
EGAF00004969428	fq.gz	5.3 MB	Report
EGAF00004969429	fq.gz	3.7 MB	Report
EGAF00004969430	fq.gz	8.4 MB	Report
EGAF00004969431	fq.gz	5.5 MB	Report
EGAF00004969432	fq.gz	849.5 kB	Report
EGAF00004969433	fq.gz	613.3 kB	Report
EGAF00004969434	fq.gz	973.9 kB	Report
EGAF00004969435	fq.gz	704.1 kB	Report
EGAF00004969436	fq.gz	6.6 MB	Report
EGAF00004969437	fq.gz	4.2 MB	Report
EGAF00004969438	fq.gz	5.3 MB	Report
EGAF00004969439	fq.gz	4.0 MB	Report
EGAF00004969440	fq.gz	4.1 MB	Report
EGAF00004969441	fq.gz	3.3 MB	Report
EGAF00004969442	fq.gz	5.5 MB	Report
EGAF00004969443	fq.gz	3.5 MB	Report
EGAF00004969444	fq.gz	5.4 MB	Report
EGAF00004969445	fq.gz	4.0 MB	Report
EGAF00004969446	fq.gz	1.0 MB	Report
EGAF00004969447	fq.gz	847.1 kB	Report
EGAF00004969448	fq.gz	6.0 MB	Report
EGAF00004969449	fq.gz	4.4 MB	Report
EGAF00004969450	fq.gz	7.2 MB	Report
EGAF00004969451	fq.gz	5.3 MB	Report
EGAF00004969452	fq.gz	5.5 MB	Report
EGAF00004969453	fq.gz	3.9 MB	Report
EGAF00004969454	fq.gz	1.5 MB	Report
EGAF00004969455	fq.gz	1.8 MB	Report
EGAF00004969456	fq.gz	4.4 MB	Report
EGAF00004969457	fq.gz	3.3 MB	Report
EGAF00004969458	fq.gz	5.3 MB	Report
EGAF00004969459	fq.gz	3.6 MB	Report
EGAF00004969460	fq.gz	5.3 MB	Report
EGAF00004969461	fq.gz	3.8 MB	Report
EGAF00004969462	fq.gz	5.1 MB	Report
EGAF00004969463	fq.gz	3.8 MB	Report
EGAF00004969464	fq.gz	3.5 MB	Report
EGAF00004969465	fq.gz	2.7 MB	Report
EGAF00004969466	fq.gz	5.7 MB	Report
EGAF00004969467	fq.gz	3.8 MB	Report
EGAF00004969468	fq.gz	2.8 MB	Report
EGAF00004969469	fq.gz	2.1 MB	Report
EGAF00004969470	fq.gz	215.3 kB	Report
EGAF00004969471	fq.gz	158.9 kB	Report
EGAF00004969472	fq.gz	4.9 MB	Report
EGAF00004969473	fq.gz	3.5 MB	Report
EGAF00004969474	fq.gz	5.2 MB	Report
EGAF00004969475	fq.gz	4.0 MB	Report
EGAF00004969476	fq.gz	5.5 MB	Report
EGAF00004969477	fq.gz	3.8 MB	Report
EGAF00004969478	fq.gz	4.9 MB	Report
EGAF00004969479	fq.gz	3.5 MB	Report
EGAF00004969480	fq.gz	6.4 MB	Report
EGAF00004969481	fq.gz	5.0 MB	Report
EGAF00004969482	fq.gz	4.8 MB	Report
EGAF00004969483	fq.gz	3.5 MB	Report
EGAF00004969484	fq.gz	6.5 MB	Report
EGAF00004969485	fq.gz	4.8 MB	Report
EGAF00004969486	fq.gz	6.4 MB	Report
EGAF00004969487	fq.gz	5.0 MB	Report
EGAF00004969488	fq.gz	5.4 MB	Report
EGAF00004969489	fq.gz	4.2 MB	Report
EGAF00004969490	fq.gz	3.7 MB	Report
EGAF00004969491	fq.gz	2.6 MB	Report
EGAF00004969492	fq.gz	4.6 MB	Report
EGAF00004969493	fq.gz	3.4 MB	Report
EGAF00004969494	fq.gz	6.0 MB	Report
EGAF00004969495	fq.gz	4.9 MB	Report
EGAF00004969496	fq.gz	2.8 MB	Report
EGAF00004969497	fq.gz	2.3 MB	Report
EGAF00004969498	fq.gz	6.4 MB	Report
EGAF00004969499	fq.gz	4.4 MB	Report
EGAF00004969500	fq.gz	6.1 MB	Report
EGAF00004969501	fq.gz	4.8 MB	Report
EGAF00004969502	fq.gz	1.6 MB	Report
EGAF00004969503	fq.gz	1.2 MB	Report
EGAF00004969504	fq.gz	6.0 MB	Report
EGAF00004969505	fq.gz	4.4 MB	Report
EGAF00004969506	fq.gz	6.5 MB	Report
EGAF00004969507	fq.gz	4.5 MB	Report
EGAF00004969508	fq.gz	36.1 kB	Report
EGAF00004969509	fq.gz	27.1 kB	Report
EGAF00004969510	fq.gz	6.7 MB	Report
EGAF00004969511	fq.gz	4.9 MB	Report
EGAF00004969512	fq.gz	7.8 MB	Report
EGAF00004969513	fq.gz	5.4 MB	Report
EGAF00004969514	fq.gz	34.7 MB	Report
EGAF00004969515	fq.gz	25.1 MB	Report
EGAF00004969516	fq.gz	6.5 MB	Report
EGAF00004969517	fq.gz	4.2 MB	Report
EGAF00004969518	fq.gz	6.7 MB	Report
EGAF00004969519	fq.gz	5.0 MB	Report
EGAF00004969520	fq.gz	6.1 MB	Report
EGAF00004969521	fq.gz	4.5 MB	Report
EGAF00004969522	fq.gz	6.5 MB	Report
EGAF00004969523	fq.gz	4.4 MB	Report
EGAF00004969524	fq.gz	6.1 MB	Report
EGAF00004969525	fq.gz	4.5 MB	Report
EGAF00004969526	fq.gz	5.7 MB	Report
EGAF00004969527	fq.gz	4.2 MB	Report
EGAF00004969528	fq.gz	5.8 MB	Report
EGAF00004969529	fq.gz	3.3 MB	Report
EGAF00004969530	fq.gz	6.1 MB	Report
EGAF00004969531	fq.gz	4.1 MB	Report
EGAF00004969532	fq.gz	5.5 MB	Report
EGAF00004969533	fq.gz	3.8 MB	Report
EGAF00004969534	fq.gz	4.5 MB	Report
EGAF00004969535	fq.gz	3.4 MB	Report
EGAF00004969536	fq.gz	5.2 MB	Report
EGAF00004969537	fq.gz	3.6 MB	Report
EGAF00004969538	fq.gz	993.8 kB	Report
EGAF00004969539	fq.gz	778.1 kB	Report
EGAF00004969540	fq.gz	1.3 MB	Report
EGAF00004969541	fq.gz	981.0 kB	Report
EGAF00004969542	fq.gz	6.0 MB	Report
EGAF00004969543	fq.gz	4.0 MB	Report
EGAF00004969544	fq.gz	6.0 MB	Report
EGAF00004969545	fq.gz	4.3 MB	Report
EGAF00004969546	fq.gz	2.6 MB	Report
EGAF00004969547	fq.gz	1.9 MB	Report
EGAF00004969548	fq.gz	5.9 MB	Report
EGAF00004969549	fq.gz	4.5 MB	Report
EGAF00004969550	fq.gz	5.3 MB	Report
EGAF00004969551	fq.gz	4.0 MB	Report
EGAF00004969552	fq.gz	4.2 MB	Report
EGAF00004969553	fq.gz	3.1 MB	Report
EGAF00004969554	fq.gz	5.6 MB	Report
EGAF00004969555	fq.gz	4.2 MB	Report
EGAF00004969556	fq.gz	895.7 kB	Report
EGAF00004969557	fq.gz	658.0 kB	Report
EGAF00004969558	fq.gz	1.4 MB	Report
EGAF00004969559	fq.gz	1.1 MB	Report
EGAF00004969560	fq.gz	7.3 MB	Report
EGAF00004969561	fq.gz	5.1 MB	Report
EGAF00004969562	fq.gz	5.9 MB	Report
EGAF00004969563	fq.gz	4.6 MB	Report
EGAF00004969564	fq.gz	81.3 kB	Report
EGAF00004969565	fq.gz	60.0 kB	Report
EGAF00004969566	fq.gz	164.8 kB	Report
EGAF00004969567	fq.gz	134.1 kB	Report
EGAF00004969568	fq.gz	195.5 kB	Report
EGAF00004969569	fq.gz	143.5 kB	Report
EGAF00004969570	fq.gz	417.7 kB	Report
EGAF00004969571	fq.gz	328.8 kB	Report
EGAF00004969572	fq.gz	167.7 kB	Report
EGAF00004969573	fq.gz	124.7 kB	Report
EGAF00004969574	fq.gz	316.8 kB	Report
EGAF00004969575	fq.gz	246.6 kB	Report
EGAF00004969576	fq.gz	33.6 kB	Report
EGAF00004969577	fq.gz	25.8 kB	Report
EGAF00004969578	fq.gz	207.4 kB	Report
EGAF00004969579	fq.gz	151.4 kB	Report
EGAF00004969580	fq.gz	114.9 kB	Report
EGAF00004969581	fq.gz	96.0 kB	Report
EGAF00004969582	fq.gz	41.4 kB	Report
EGAF00004969583	fq.gz	29.3 kB	Report
EGAF00004969584	fq.gz	185.9 kB	Report
EGAF00004969585	fq.gz	155.2 kB	Report
EGAF00004969586	fq.gz	249.5 kB	Report
EGAF00004969587	fq.gz	206.1 kB	Report
EGAF00004969588	fq.gz	1.9 MB	Report
EGAF00004969589	fq.gz	1.4 MB	Report
EGAF00004969590	fq.gz	1.2 MB	Report
EGAF00004969591	fq.gz	873.4 kB	Report
EGAF00004969592	fq.gz	6.8 MB	Report
EGAF00004969593	fq.gz	4.9 MB	Report
EGAF00004969594	fq.gz	2.1 MB	Report
EGAF00004969595	fq.gz	1.6 MB	Report
EGAF00004969596	fq.gz	3.9 MB	Report
EGAF00004969597	fq.gz	4.8 MB	Report
EGAF00004969598	fq.gz	5.9 MB	Report
EGAF00004969599	fq.gz	4.5 MB	Report
300 Files (1.3 GB)