Need Help?

PopCol 16S gut microbiome sequencing

PopCol is a cohort study in Stockholm, Sweden that includes a data-rich set of individuals with data available from bowel symptoms questionnaires, gastroenterology visits and biospecimens (genotype and 16S sequencing from blood and stool samples, respectively). Genotyping was carried out using the Illumina HumanOmniExpressExome-8v1 arrays at the SciLifeLab NGI facility in Uppsala, Sweden. Fecal DNA was extracted from samples kept at -80°C using Qiagen 5 QIAamp DNA Stool Mini Kits and analyzed using 16S rRNA gene amplicon sequencing (in the V1-V2 hypervariable region). This was performed on the Illumina MiSeq platform at the Institute of Clinical Molecular Biology (IKMB) in Kiel, Germany. Of these, six PopCol participants were PPI users and 12 used antibiotics. The study was approved by the local Committee of Research Ethics (Forskningskommitté Syd) at Karolinska Institutet, Stockholm, in November 2001. Written informed consent was obtained from all participants

Request Access

PopCol 16S data access

Data is available for non-commercial, research purpose via request in Google Forms: https://forms.gle/GGuxbTUq6iewFrif7

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004869 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005103490 fastq.gz 26.7 MB
EGAF00005103491 fastq.gz 35.0 MB
EGAF00005103492 fastq.gz 24.2 MB
EGAF00005103493 fastq.gz 31.5 MB
EGAF00005103494 fastq.gz 19.6 MB
EGAF00005103495 fastq.gz 25.7 MB
EGAF00005103496 fastq.gz 25.0 MB
EGAF00005103497 fastq.gz 32.5 MB
EGAF00005103498 fastq.gz 19.8 MB
EGAF00005103499 fastq.gz 25.6 MB
EGAF00005103500 fastq.gz 20.4 MB
EGAF00005103501 fastq.gz 25.9 MB
EGAF00005103502 fastq.gz 17.9 MB
EGAF00005103503 fastq.gz 23.2 MB
EGAF00005103504 fastq.gz 14.2 MB
EGAF00005103505 fastq.gz 18.1 MB
EGAF00005103506 fastq.gz 15.6 MB
EGAF00005103507 fastq.gz 21.1 MB
EGAF00005103508 fastq.gz 14.8 MB
EGAF00005103509 fastq.gz 19.7 MB
EGAF00005103510 fastq.gz 21.4 MB
EGAF00005103511 fastq.gz 28.9 MB
EGAF00005103512 fastq.gz 21.2 MB
EGAF00005103513 fastq.gz 27.9 MB
EGAF00005103514 fastq.gz 28.3 MB
EGAF00005103515 fastq.gz 36.8 MB
EGAF00005103516 fastq.gz 22.9 MB
EGAF00005103517 fastq.gz 29.9 MB
EGAF00005103518 fastq.gz 18.8 MB
EGAF00005103519 fastq.gz 25.1 MB
EGAF00005103520 fastq.gz 13.5 MB
EGAF00005103521 fastq.gz 17.9 MB
EGAF00005103522 fastq.gz 12.0 MB
EGAF00005103523 fastq.gz 16.1 MB
EGAF00005103524 fastq.gz 19.9 MB
EGAF00005103525 fastq.gz 25.7 MB
EGAF00005103526 fastq.gz 17.3 MB
EGAF00005103527 fastq.gz 22.8 MB
EGAF00005103528 fastq.gz 26.4 MB
EGAF00005103529 fastq.gz 34.7 MB
EGAF00005103530 fastq.gz 24.7 MB
EGAF00005103531 fastq.gz 31.8 MB
EGAF00005103532 fastq.gz 23.3 MB
EGAF00005103533 fastq.gz 31.2 MB
EGAF00005103534 fastq.gz 16.0 MB
EGAF00005103535 fastq.gz 20.4 MB
EGAF00005103536 fastq.gz 16.4 MB
EGAF00005103537 fastq.gz 21.1 MB
EGAF00005103538 fastq.gz 13.8 MB
EGAF00005103539 fastq.gz 17.5 MB
EGAF00005103540 fastq.gz 17.5 MB
EGAF00005103541 fastq.gz 22.7 MB
EGAF00005103542 fastq.gz 21.8 MB
EGAF00005103543 fastq.gz 28.1 MB
EGAF00005103544 fastq.gz 35.6 MB
EGAF00005103545 fastq.gz 38.2 MB
EGAF00005103546 fastq.gz 16.5 MB
EGAF00005103547 fastq.gz 21.7 MB
EGAF00005103548 fastq.gz 18.4 MB
EGAF00005103549 fastq.gz 24.1 MB
EGAF00005103550 fastq.gz 15.8 MB
EGAF00005103551 fastq.gz 20.8 MB
EGAF00005103552 fastq.gz 16.9 MB
EGAF00005103553 fastq.gz 22.2 MB
EGAF00005103554 fastq.gz 17.4 MB
EGAF00005103555 fastq.gz 23.0 MB
EGAF00005103556 fastq.gz 8.8 MB
EGAF00005103557 fastq.gz 11.8 MB
EGAF00005103558 fastq.gz 17.3 MB
EGAF00005103559 fastq.gz 22.7 MB
EGAF00005103560 fastq.gz 13.3 MB
EGAF00005103561 fastq.gz 17.1 MB
EGAF00005103562 fastq.gz 23.7 MB
EGAF00005103563 fastq.gz 31.7 MB
EGAF00005103564 fastq.gz 19.0 MB
EGAF00005103565 fastq.gz 24.9 MB
EGAF00005103566 fastq.gz 22.2 MB
EGAF00005103567 fastq.gz 29.4 MB
EGAF00005103568 fastq.gz 24.6 MB
EGAF00005103569 fastq.gz 32.5 MB
EGAF00005103570 fastq.gz 18.2 MB
EGAF00005103571 fastq.gz 23.9 MB
EGAF00005103572 fastq.gz 20.0 MB
EGAF00005103573 fastq.gz 26.2 MB
EGAF00005103574 fastq.gz 23.5 MB
EGAF00005103575 fastq.gz 30.8 MB
EGAF00005103576 fastq.gz 20.1 MB
EGAF00005103577 fastq.gz 27.0 MB
EGAF00005103578 fastq.gz 21.6 MB
EGAF00005103579 fastq.gz 28.2 MB
EGAF00005103580 fastq.gz 22.2 MB
EGAF00005103581 fastq.gz 29.4 MB
EGAF00005103582 fastq.gz 20.7 MB
EGAF00005103583 fastq.gz 27.2 MB
EGAF00005103584 fastq.gz 18.2 MB
EGAF00005103585 fastq.gz 24.1 MB
EGAF00005103586 fastq.gz 24.3 MB
EGAF00005103587 fastq.gz 32.2 MB
EGAF00005103588 fastq.gz 14.1 MB
EGAF00005103589 fastq.gz 18.6 MB
EGAF00005103590 fastq.gz 18.5 MB
EGAF00005103591 fastq.gz 24.2 MB
EGAF00005103592 fastq.gz 13.3 MB
EGAF00005103593 fastq.gz 17.9 MB
EGAF00005103594 fastq.gz 18.2 MB
EGAF00005103595 fastq.gz 23.9 MB
EGAF00005103596 fastq.gz 17.6 MB
EGAF00005103597 fastq.gz 24.0 MB
EGAF00005103598 fastq.gz 16.9 MB
EGAF00005103599 fastq.gz 22.0 MB
EGAF00005103600 fastq.gz 19.0 MB
EGAF00005103601 fastq.gz 25.1 MB
EGAF00005103602 fastq.gz 12.0 MB
EGAF00005103603 fastq.gz 15.8 MB
EGAF00005103604 fastq.gz 11.9 MB
EGAF00005103605 fastq.gz 15.5 MB
EGAF00005103606 fastq.gz 13.8 MB
EGAF00005103607 fastq.gz 17.7 MB
EGAF00005103608 fastq.gz 21.1 MB
EGAF00005103609 fastq.gz 27.6 MB
EGAF00005103610 fastq.gz 22.6 MB
EGAF00005103611 fastq.gz 30.2 MB
EGAF00005103612 fastq.gz 23.3 MB
EGAF00005103613 fastq.gz 30.8 MB
EGAF00005103614 fastq.gz 18.3 MB
EGAF00005103615 fastq.gz 24.1 MB
EGAF00005103616 fastq.gz 18.2 MB
EGAF00005103617 fastq.gz 24.6 MB
EGAF00005103618 fastq.gz 17.5 MB
EGAF00005103619 fastq.gz 22.6 MB
EGAF00005103620 fastq.gz 20.8 MB
EGAF00005103621 fastq.gz 26.5 MB
EGAF00005103622 fastq.gz 33.4 MB
EGAF00005103623 fastq.gz 35.5 MB
EGAF00005103624 fastq.gz 33.8 MB
EGAF00005103625 fastq.gz 36.4 MB
EGAF00005103626 fastq.gz 43.6 MB
EGAF00005103627 fastq.gz 46.8 MB
EGAF00005103628 fastq.gz 46.7 MB
EGAF00005103629 fastq.gz 50.6 MB
EGAF00005103630 fastq.gz 57.9 MB
EGAF00005103631 fastq.gz 61.7 MB
EGAF00005103632 fastq.gz 25.3 MB
EGAF00005103633 fastq.gz 27.0 MB
EGAF00005103634 fastq.gz 29.9 MB
EGAF00005103635 fastq.gz 31.9 MB
EGAF00005103636 fastq.gz 36.5 MB
EGAF00005103637 fastq.gz 38.7 MB
EGAF00005103638 fastq.gz 24.5 MB
EGAF00005103639 fastq.gz 26.5 MB
EGAF00005103640 fastq.gz 33.5 MB
EGAF00005103641 fastq.gz 35.2 MB
EGAF00005103642 fastq.gz 25.9 MB
EGAF00005103643 fastq.gz 27.5 MB
EGAF00005103644 fastq.gz 42.7 MB
EGAF00005103645 fastq.gz 45.9 MB
EGAF00005103646 fastq.gz 36.4 MB
EGAF00005103647 fastq.gz 39.8 MB
EGAF00005103648 fastq.gz 28.3 MB
EGAF00005103649 fastq.gz 30.2 MB
EGAF00005103650 fastq.gz 28.0 MB
EGAF00005103651 fastq.gz 29.9 MB
EGAF00005103652 fastq.gz 27.7 MB
EGAF00005103653 fastq.gz 30.0 MB
EGAF00005103654 fastq.gz 31.8 MB
EGAF00005103655 fastq.gz 34.3 MB
EGAF00005103656 fastq.gz 30.5 MB
EGAF00005103657 fastq.gz 32.5 MB
EGAF00005103658 fastq.gz 31.1 MB
EGAF00005103659 fastq.gz 33.2 MB
EGAF00005103660 fastq.gz 50.9 MB
EGAF00005103661 fastq.gz 54.7 MB
EGAF00005103662 fastq.gz 25.3 MB
EGAF00005103663 fastq.gz 26.8 MB
EGAF00005103664 fastq.gz 28.1 MB
EGAF00005103665 fastq.gz 30.2 MB
EGAF00005103666 fastq.gz 25.3 MB
EGAF00005103667 fastq.gz 27.3 MB
EGAF00005103668 fastq.gz 34.6 MB
EGAF00005103669 fastq.gz 37.4 MB
EGAF00005103670 fastq.gz 36.7 MB
EGAF00005103671 fastq.gz 39.3 MB
EGAF00005103672 fastq.gz 36.1 MB
EGAF00005103673 fastq.gz 38.9 MB
EGAF00005103674 fastq.gz 19.8 MB
EGAF00005103675 fastq.gz 21.0 MB
EGAF00005103676 fastq.gz 25.6 MB
EGAF00005103677 fastq.gz 27.2 MB
EGAF00005103678 fastq.gz 27.6 MB
EGAF00005103679 fastq.gz 29.1 MB
EGAF00005103680 fastq.gz 22.7 MB
EGAF00005103681 fastq.gz 24.5 MB
EGAF00005103682 fastq.gz 34.4 MB
EGAF00005103683 fastq.gz 37.0 MB
EGAF00005103684 fastq.gz 33.2 MB
EGAF00005103685 fastq.gz 35.3 MB
EGAF00005103686 fastq.gz 22.7 MB
EGAF00005103687 fastq.gz 24.2 MB
EGAF00005103688 fastq.gz 38.0 MB
EGAF00005103689 fastq.gz 41.1 MB
EGAF00005103690 fastq.gz 26.8 MB
EGAF00005103691 fastq.gz 28.7 MB
EGAF00005103692 fastq.gz 28.9 MB
EGAF00005103693 fastq.gz 30.9 MB
EGAF00005103694 fastq.gz 29.7 MB
EGAF00005103695 fastq.gz 32.1 MB
EGAF00005103696 fastq.gz 18.7 MB
EGAF00005103697 fastq.gz 20.1 MB
EGAF00005103698 fastq.gz 28.3 MB
EGAF00005103699 fastq.gz 30.3 MB
EGAF00005103700 fastq.gz 32.8 MB
EGAF00005103701 fastq.gz 34.7 MB
EGAF00005103702 fastq.gz 47.1 MB
EGAF00005103703 fastq.gz 50.6 MB
EGAF00005103704 fastq.gz 31.4 MB
EGAF00005103705 fastq.gz 33.6 MB
EGAF00005103706 fastq.gz 26.4 MB
EGAF00005103707 fastq.gz 28.5 MB
EGAF00005103708 fastq.gz 25.3 MB
EGAF00005103709 fastq.gz 27.1 MB
EGAF00005104146 fastq.gz 41.2 MB
EGAF00005104147 fastq.gz 44.4 MB
EGAF00005104148 fastq.gz 38.4 MB
EGAF00005104149 fastq.gz 40.6 MB
EGAF00005104150 fastq.gz 48.4 MB
EGAF00005104151 fastq.gz 51.7 MB
EGAF00005104152 fastq.gz 29.0 MB
EGAF00005104153 fastq.gz 30.3 MB
EGAF00005104154 fastq.gz 28.1 MB
EGAF00005104155 fastq.gz 30.4 MB
EGAF00005104156 fastq.gz 28.9 MB
EGAF00005104157 fastq.gz 30.5 MB
EGAF00005104158 fastq.gz 30.7 MB
EGAF00005104159 fastq.gz 32.5 MB
EGAF00005104160 fastq.gz 38.1 MB
EGAF00005104161 fastq.gz 40.2 MB
EGAF00005104162 fastq.gz 33.3 MB
EGAF00005104163 fastq.gz 36.0 MB
EGAF00005104164 fastq.gz 23.8 MB
EGAF00005104165 fastq.gz 25.3 MB
EGAF00005104166 fastq.gz 34.0 MB
EGAF00005104167 fastq.gz 35.8 MB
EGAF00005104168 fastq.gz 28.4 MB
EGAF00005104169 fastq.gz 30.1 MB
EGAF00005104170 fastq.gz 30.6 MB
EGAF00005104171 fastq.gz 32.6 MB
EGAF00005104172 fastq.gz 32.5 MB
EGAF00005104173 fastq.gz 35.0 MB
EGAF00005104174 fastq.gz 31.1 MB
EGAF00005104175 fastq.gz 33.0 MB
EGAF00005104176 fastq.gz 55.0 MB
EGAF00005104177 fastq.gz 59.3 MB
EGAF00005104178 fastq.gz 39.5 MB
EGAF00005104179 fastq.gz 42.1 MB
EGAF00005104180 fastq.gz 28.1 MB
EGAF00005104181 fastq.gz 30.0 MB
EGAF00005104182 fastq.gz 26.9 MB
EGAF00005104183 fastq.gz 28.5 MB
EGAF00005104184 fastq.gz 33.0 MB
EGAF00005104185 fastq.gz 34.9 MB
EGAF00005104186 fastq.gz 31.4 MB
EGAF00005104187 fastq.gz 33.3 MB
EGAF00005104188 fastq.gz 23.6 MB
EGAF00005104189 fastq.gz 25.0 MB
EGAF00005104190 fastq.gz 33.9 MB
EGAF00005104191 fastq.gz 36.3 MB
EGAF00005104192 fastq.gz 28.4 MB
EGAF00005104193 fastq.gz 30.1 MB
268 Files (7.5 GB)