About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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PopCol 16S gut microbiome sequencing

PopCol is a cohort study in Stockholm, Sweden that includes a data-rich set of individuals with data available from bowel symptoms questionnaires, gastroenterology visits and biospecimens (genotype and 16S sequencing from blood and stool samples, respectively). Genotyping was carried out using the Illumina HumanOmniExpressExome-8v1 arrays at the SciLifeLab NGI facility in Uppsala, Sweden. Fecal DNA was extracted from samples kept at -80°C using Qiagen 5 QIAamp DNA Stool Mini Kits and analyzed using 16S rRNA gene amplicon sequencing (in the V1-V2 hypervariable region). This was performed on the Illumina MiSeq platform at the Institute of Clinical Molecular Biology (IKMB) in Kiel, Germany. Of these, six PopCol participants were PPI users and 12 used antibiotics. The study was approved by the local Committee of Research Ethics (Forskningskommitté Syd) at Karolinska Institutet, Stockholm, in November 2001. Written informed consent was obtained from all participants

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PopCol 16S data access

Data is available for non-commercial, research purpose via request in Google Forms: https://forms.gle/GGuxbTUq6iewFrif7

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001004869 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005103490 fastq.gz 26.7 MB Report
EGAF00005103491 fastq.gz 35.0 MB Report
EGAF00005103492 fastq.gz 24.2 MB Report
EGAF00005103493 fastq.gz 31.5 MB Report
EGAF00005103494 fastq.gz 19.6 MB Report
EGAF00005103495 fastq.gz 25.7 MB Report
EGAF00005103496 fastq.gz 25.0 MB Report
EGAF00005103497 fastq.gz 32.5 MB Report
EGAF00005103498 fastq.gz 19.8 MB Report
EGAF00005103499 fastq.gz 25.6 MB Report
EGAF00005103500 fastq.gz 20.4 MB Report
EGAF00005103501 fastq.gz 25.9 MB Report
EGAF00005103502 fastq.gz 17.9 MB Report
EGAF00005103503 fastq.gz 23.2 MB Report
EGAF00005103504 fastq.gz 14.2 MB Report
EGAF00005103505 fastq.gz 18.1 MB Report
EGAF00005103506 fastq.gz 15.6 MB Report
EGAF00005103507 fastq.gz 21.1 MB Report
EGAF00005103508 fastq.gz 14.8 MB Report
EGAF00005103509 fastq.gz 19.7 MB Report
EGAF00005103510 fastq.gz 21.4 MB Report
EGAF00005103511 fastq.gz 28.9 MB Report
EGAF00005103512 fastq.gz 21.2 MB Report
EGAF00005103513 fastq.gz 27.9 MB Report
EGAF00005103514 fastq.gz 28.3 MB Report
EGAF00005103515 fastq.gz 36.8 MB Report
EGAF00005103516 fastq.gz 22.9 MB Report
EGAF00005103517 fastq.gz 29.9 MB Report
EGAF00005103518 fastq.gz 18.8 MB Report
EGAF00005103519 fastq.gz 25.1 MB Report
EGAF00005103520 fastq.gz 13.5 MB Report
EGAF00005103521 fastq.gz 17.9 MB Report
EGAF00005103522 fastq.gz 12.0 MB Report
EGAF00005103523 fastq.gz 16.1 MB Report
EGAF00005103524 fastq.gz 19.9 MB Report
EGAF00005103525 fastq.gz 25.7 MB Report
EGAF00005103526 fastq.gz 17.3 MB Report
EGAF00005103527 fastq.gz 22.8 MB Report
EGAF00005103528 fastq.gz 26.4 MB Report
EGAF00005103529 fastq.gz 34.7 MB Report
EGAF00005103530 fastq.gz 24.7 MB Report
EGAF00005103531 fastq.gz 31.8 MB Report
EGAF00005103532 fastq.gz 23.3 MB Report
EGAF00005103533 fastq.gz 31.2 MB Report
EGAF00005103534 fastq.gz 16.0 MB Report
EGAF00005103535 fastq.gz 20.4 MB Report
EGAF00005103536 fastq.gz 16.4 MB Report
EGAF00005103537 fastq.gz 21.1 MB Report
EGAF00005103538 fastq.gz 13.8 MB Report
EGAF00005103539 fastq.gz 17.5 MB Report
EGAF00005103540 fastq.gz 17.5 MB Report
EGAF00005103541 fastq.gz 22.7 MB Report
EGAF00005103542 fastq.gz 21.8 MB Report
EGAF00005103543 fastq.gz 28.1 MB Report
EGAF00005103544 fastq.gz 35.6 MB Report
EGAF00005103545 fastq.gz 38.2 MB Report
EGAF00005103546 fastq.gz 16.5 MB Report
EGAF00005103547 fastq.gz 21.7 MB Report
EGAF00005103548 fastq.gz 18.4 MB Report
EGAF00005103549 fastq.gz 24.1 MB Report
EGAF00005103550 fastq.gz 15.8 MB Report
EGAF00005103551 fastq.gz 20.8 MB Report
EGAF00005103552 fastq.gz 16.9 MB Report
EGAF00005103553 fastq.gz 22.2 MB Report
EGAF00005103554 fastq.gz 17.4 MB Report
EGAF00005103555 fastq.gz 23.0 MB Report
EGAF00005103556 fastq.gz 8.8 MB Report
EGAF00005103557 fastq.gz 11.8 MB Report
EGAF00005103558 fastq.gz 17.3 MB Report
EGAF00005103559 fastq.gz 22.7 MB Report
EGAF00005103560 fastq.gz 13.3 MB Report
EGAF00005103561 fastq.gz 17.1 MB Report
EGAF00005103562 fastq.gz 23.7 MB Report
EGAF00005103563 fastq.gz 31.7 MB Report
EGAF00005103564 fastq.gz 19.0 MB Report
EGAF00005103565 fastq.gz 24.9 MB Report
EGAF00005103566 fastq.gz 22.2 MB Report
EGAF00005103567 fastq.gz 29.4 MB Report
EGAF00005103568 fastq.gz 24.6 MB Report
EGAF00005103569 fastq.gz 32.5 MB Report
EGAF00005103570 fastq.gz 18.2 MB Report
EGAF00005103571 fastq.gz 23.9 MB Report
EGAF00005103572 fastq.gz 20.0 MB Report
EGAF00005103573 fastq.gz 26.2 MB Report
EGAF00005103574 fastq.gz 23.5 MB Report
EGAF00005103575 fastq.gz 30.8 MB Report
EGAF00005103576 fastq.gz 20.1 MB Report
EGAF00005103577 fastq.gz 27.0 MB Report
EGAF00005103578 fastq.gz 21.6 MB Report
EGAF00005103579 fastq.gz 28.2 MB Report
EGAF00005103580 fastq.gz 22.2 MB Report
EGAF00005103581 fastq.gz 29.4 MB Report
EGAF00005103582 fastq.gz 20.7 MB Report
EGAF00005103583 fastq.gz 27.2 MB Report
EGAF00005103584 fastq.gz 18.2 MB Report
EGAF00005103585 fastq.gz 24.1 MB Report
EGAF00005103586 fastq.gz 24.3 MB Report
EGAF00005103587 fastq.gz 32.2 MB Report
EGAF00005103588 fastq.gz 14.1 MB Report
EGAF00005103589 fastq.gz 18.6 MB Report
EGAF00005103590 fastq.gz 18.5 MB Report
EGAF00005103591 fastq.gz 24.2 MB Report
EGAF00005103592 fastq.gz 13.3 MB Report
EGAF00005103593 fastq.gz 17.9 MB Report
EGAF00005103594 fastq.gz 18.2 MB Report
EGAF00005103595 fastq.gz 23.9 MB Report
EGAF00005103596 fastq.gz 17.6 MB Report
EGAF00005103597 fastq.gz 24.0 MB Report
EGAF00005103598 fastq.gz 16.9 MB Report
EGAF00005103599 fastq.gz 22.0 MB Report
EGAF00005103600 fastq.gz 19.0 MB Report
EGAF00005103601 fastq.gz 25.1 MB Report
EGAF00005103602 fastq.gz 12.0 MB Report
EGAF00005103603 fastq.gz 15.8 MB Report
EGAF00005103604 fastq.gz 11.9 MB Report
EGAF00005103605 fastq.gz 15.5 MB Report
EGAF00005103606 fastq.gz 13.8 MB Report
EGAF00005103607 fastq.gz 17.7 MB Report
EGAF00005103608 fastq.gz 21.1 MB Report
EGAF00005103609 fastq.gz 27.6 MB Report
EGAF00005103610 fastq.gz 22.6 MB Report
EGAF00005103611 fastq.gz 30.2 MB Report
EGAF00005103612 fastq.gz 23.3 MB Report
EGAF00005103613 fastq.gz 30.8 MB Report
EGAF00005103614 fastq.gz 18.3 MB Report
EGAF00005103615 fastq.gz 24.1 MB Report
EGAF00005103616 fastq.gz 18.2 MB Report
EGAF00005103617 fastq.gz 24.6 MB Report
EGAF00005103618 fastq.gz 17.5 MB Report
EGAF00005103619 fastq.gz 22.6 MB Report
EGAF00005103620 fastq.gz 20.8 MB Report
EGAF00005103621 fastq.gz 26.5 MB Report
EGAF00005103622 fastq.gz 33.4 MB Report
EGAF00005103623 fastq.gz 35.5 MB Report
EGAF00005103624 fastq.gz 33.8 MB Report
EGAF00005103625 fastq.gz 36.4 MB Report
EGAF00005103626 fastq.gz 43.6 MB Report
EGAF00005103627 fastq.gz 46.8 MB Report
EGAF00005103628 fastq.gz 46.7 MB Report
EGAF00005103629 fastq.gz 50.6 MB Report
EGAF00005103630 fastq.gz 57.9 MB Report
EGAF00005103631 fastq.gz 61.7 MB Report
EGAF00005103632 fastq.gz 25.3 MB Report
EGAF00005103633 fastq.gz 27.0 MB Report
EGAF00005103634 fastq.gz 29.9 MB Report
EGAF00005103635 fastq.gz 31.9 MB Report
EGAF00005103636 fastq.gz 36.5 MB Report
EGAF00005103637 fastq.gz 38.7 MB Report
EGAF00005103638 fastq.gz 24.5 MB Report
EGAF00005103639 fastq.gz 26.5 MB Report
EGAF00005103640 fastq.gz 33.5 MB Report
EGAF00005103641 fastq.gz 35.2 MB Report
EGAF00005103642 fastq.gz 25.9 MB Report
EGAF00005103643 fastq.gz 27.5 MB Report
EGAF00005103644 fastq.gz 42.7 MB Report
EGAF00005103645 fastq.gz 45.9 MB Report
EGAF00005103646 fastq.gz 36.4 MB Report
EGAF00005103647 fastq.gz 39.8 MB Report
EGAF00005103648 fastq.gz 28.3 MB Report
EGAF00005103649 fastq.gz 30.2 MB Report
EGAF00005103650 fastq.gz 28.0 MB Report
EGAF00005103651 fastq.gz 29.9 MB Report
EGAF00005103652 fastq.gz 27.7 MB Report
EGAF00005103653 fastq.gz 30.0 MB Report
EGAF00005103654 fastq.gz 31.8 MB Report
EGAF00005103655 fastq.gz 34.3 MB Report
EGAF00005103656 fastq.gz 30.5 MB Report
EGAF00005103657 fastq.gz 32.5 MB Report
EGAF00005103658 fastq.gz 31.1 MB Report
EGAF00005103659 fastq.gz 33.2 MB Report
EGAF00005103660 fastq.gz 50.9 MB Report
EGAF00005103661 fastq.gz 54.7 MB Report
EGAF00005103662 fastq.gz 25.3 MB Report
EGAF00005103663 fastq.gz 26.8 MB Report
EGAF00005103664 fastq.gz 28.1 MB Report
EGAF00005103665 fastq.gz 30.2 MB Report
EGAF00005103666 fastq.gz 25.3 MB Report
EGAF00005103667 fastq.gz 27.3 MB Report
EGAF00005103668 fastq.gz 34.6 MB Report
EGAF00005103669 fastq.gz 37.4 MB Report
EGAF00005103670 fastq.gz 36.7 MB Report
EGAF00005103671 fastq.gz 39.3 MB Report
EGAF00005103672 fastq.gz 36.1 MB Report
EGAF00005103673 fastq.gz 38.9 MB Report
EGAF00005103674 fastq.gz 19.8 MB Report
EGAF00005103675 fastq.gz 21.0 MB Report
EGAF00005103676 fastq.gz 25.6 MB Report
EGAF00005103677 fastq.gz 27.2 MB Report
EGAF00005103678 fastq.gz 27.6 MB Report
EGAF00005103679 fastq.gz 29.1 MB Report
EGAF00005103680 fastq.gz 22.7 MB Report
EGAF00005103681 fastq.gz 24.5 MB Report
EGAF00005103682 fastq.gz 34.4 MB Report
EGAF00005103683 fastq.gz 37.0 MB Report
EGAF00005103684 fastq.gz 33.2 MB Report
EGAF00005103685 fastq.gz 35.3 MB Report
EGAF00005103686 fastq.gz 22.7 MB Report
EGAF00005103687 fastq.gz 24.2 MB Report
EGAF00005103688 fastq.gz 38.0 MB Report
EGAF00005103689 fastq.gz 41.1 MB Report
EGAF00005103690 fastq.gz 26.8 MB Report
EGAF00005103691 fastq.gz 28.7 MB Report
EGAF00005103692 fastq.gz 28.9 MB Report
EGAF00005103693 fastq.gz 30.9 MB Report
EGAF00005103694 fastq.gz 29.7 MB Report
EGAF00005103695 fastq.gz 32.1 MB Report
EGAF00005103696 fastq.gz 18.7 MB Report
EGAF00005103697 fastq.gz 20.1 MB Report
EGAF00005103698 fastq.gz 28.3 MB Report
EGAF00005103699 fastq.gz 30.3 MB Report
EGAF00005103700 fastq.gz 32.8 MB Report
EGAF00005103701 fastq.gz 34.7 MB Report
EGAF00005103702 fastq.gz 47.1 MB Report
EGAF00005103703 fastq.gz 50.6 MB Report
EGAF00005103704 fastq.gz 31.4 MB Report
EGAF00005103705 fastq.gz 33.6 MB Report
EGAF00005103706 fastq.gz 26.4 MB Report
EGAF00005103707 fastq.gz 28.5 MB Report
EGAF00005103708 fastq.gz 25.3 MB Report
EGAF00005103709 fastq.gz 27.1 MB Report
EGAF00005104146 fastq.gz 41.2 MB Report
EGAF00005104147 fastq.gz 44.4 MB Report
EGAF00005104148 fastq.gz 38.4 MB Report
EGAF00005104149 fastq.gz 40.6 MB Report
EGAF00005104150 fastq.gz 48.4 MB Report
EGAF00005104151 fastq.gz 51.7 MB Report
EGAF00005104152 fastq.gz 29.0 MB Report
EGAF00005104153 fastq.gz 30.3 MB Report
EGAF00005104154 fastq.gz 28.1 MB Report
EGAF00005104155 fastq.gz 30.4 MB Report
EGAF00005104156 fastq.gz 28.9 MB Report
EGAF00005104157 fastq.gz 30.5 MB Report
EGAF00005104158 fastq.gz 30.7 MB Report
EGAF00005104159 fastq.gz 32.5 MB Report
EGAF00005104160 fastq.gz 38.1 MB Report
EGAF00005104161 fastq.gz 40.2 MB Report
EGAF00005104162 fastq.gz 33.3 MB Report
EGAF00005104163 fastq.gz 36.0 MB Report
EGAF00005104164 fastq.gz 23.8 MB Report
EGAF00005104165 fastq.gz 25.3 MB Report
EGAF00005104166 fastq.gz 34.0 MB Report
EGAF00005104167 fastq.gz 35.8 MB Report
EGAF00005104168 fastq.gz 28.4 MB Report
EGAF00005104169 fastq.gz 30.1 MB Report
EGAF00005104170 fastq.gz 30.6 MB Report
EGAF00005104171 fastq.gz 32.6 MB Report
EGAF00005104172 fastq.gz 32.5 MB Report
EGAF00005104173 fastq.gz 35.0 MB Report
EGAF00005104174 fastq.gz 31.1 MB Report
EGAF00005104175 fastq.gz 33.0 MB Report
EGAF00005104176 fastq.gz 55.0 MB Report
EGAF00005104177 fastq.gz 59.3 MB Report
EGAF00005104178 fastq.gz 39.5 MB Report
EGAF00005104179 fastq.gz 42.1 MB Report
EGAF00005104180 fastq.gz 28.1 MB Report
EGAF00005104181 fastq.gz 30.0 MB Report
EGAF00005104182 fastq.gz 26.9 MB Report
EGAF00005104183 fastq.gz 28.5 MB Report
EGAF00005104184 fastq.gz 33.0 MB Report
EGAF00005104185 fastq.gz 34.9 MB Report
EGAF00005104186 fastq.gz 31.4 MB Report
EGAF00005104187 fastq.gz 33.3 MB Report
EGAF00005104188 fastq.gz 23.6 MB Report
EGAF00005104189 fastq.gz 25.0 MB Report
EGAF00005104190 fastq.gz 33.9 MB Report
EGAF00005104191 fastq.gz 36.3 MB Report
EGAF00005104192 fastq.gz 28.4 MB Report
EGAF00005104193 fastq.gz 30.1 MB Report
268 Files (7.5 GB)