About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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1M-scBloodNL

Here we present the 1M-scBloodNL study, in which we performed single-cell RNA-seq on 120 individuals of the Northern Netherlands population cohort Lifelines. For each individual peripheral blood mononuclear cells (PBMCs) were sequenced in an unstimulated condition, and after 3 and 24 hour in vitro stimulation with C. albicans (CA), M. tuberculosis (MTB) and P. aeruginosa (PA), totalling approximately 1.3 million cells. scRNA-seq was conducted with the 10X Genomics 3'-end v2 (72 libraries) and v3 (33 libraries) technology. In general, each library contains PBMCs from 8 donors and 2 different stimulation-timepoint combinations. Donors were demultiplexed using a combination of SoupOrCell (https://www.nature.com/articles/s41592-020-0820-1) and genotype information to assign the correct donor to a donor-specific cell cluster.

Request Access

Genotype and gene expression data are freely available. Single-cell RNA-seq data (fastq files), including a tsv file that links each cell barcode to its respective donor and stimulation-timepoint combination, has been deposited at the European Genome-phenome Archive (EGA). Genotype data is hosted from the HPC cluster of the UMCG.

The 1M-scBloodNL Data Access Committee (DAC) determines access permission. In order to request data access, please click on request data and fill in the data request form with a signed data access agreement that can be found on https://eqtlgen.org/sc/datasets/1m-scbloodnl.html We aim to provide data access within 5 working days. However, during the holiday season there might be a slight delay. For more information, contact Monique van der Wijst (m.g.p.van.der.wijst@umcg.nl).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005376 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00005316416 fastq.gz 6.1 GB Report
EGAF00005316417 fastq.gz 22.7 GB Report
EGAF00005316418 fastq.gz 8.8 GB Report
EGAF00005316419 fastq.gz 34.1 GB Report
EGAF00005316420 fastq.gz 11.0 GB Report
EGAF00005316421 fastq.gz 41.3 GB Report
EGAF00005316422 fastq.gz 2.0 GB Report
EGAF00005316423 fastq.gz 7.4 GB Report
EGAF00005316424 fastq.gz 7.3 GB Report
EGAF00005316425 fastq.gz 28.0 GB Report
EGAF00005316426 fastq.gz 5.3 GB Report
EGAF00005316427 fastq.gz 23.9 GB Report
EGAF00005316428 fastq.gz 6.2 GB Report
EGAF00005316429 fastq.gz 28.8 GB Report
EGAF00005316430 fastq.gz 5.6 GB Report
EGAF00005316431 fastq.gz 25.1 GB Report
EGAF00005316432 fastq.gz 5.6 GB Report
EGAF00005316433 fastq.gz 21.0 GB Report
EGAF00005316434 fastq.gz 5.8 GB Report
EGAF00005316435 fastq.gz 26.7 GB Report
EGAF00005316436 fastq.gz 8.2 GB Report
EGAF00005316437 fastq.gz 31.4 GB Report
EGAF00005316438 fastq.gz 2.7 GB Report
EGAF00005316439 fastq.gz 10.0 GB Report
EGAF00005316440 fastq.gz 8.7 GB Report
EGAF00005316441 fastq.gz 32.2 GB Report
EGAF00005316442 fastq.gz 4.8 GB Report
EGAF00005316443 fastq.gz 21.9 GB Report
EGAF00005316444 fastq.gz 2.1 GB Report
EGAF00005316445 fastq.gz 7.8 GB Report
EGAF00005316446 fastq.gz 5.1 GB Report
EGAF00005316447 fastq.gz 21.8 GB Report
EGAF00005316448 fastq.gz 9.0 GB Report
EGAF00005316449 fastq.gz 34.8 GB Report
EGAF00005316450 fastq.gz 5.8 GB Report
EGAF00005316451 fastq.gz 25.5 GB Report
EGAF00005316452 fastq.gz 1.8 GB Report
EGAF00005316453 fastq.gz 6.7 GB Report
EGAF00005316454 fastq.gz 8.1 GB Report
EGAF00005316455 fastq.gz 31.1 GB Report
EGAF00005316456 fastq.gz 5.7 GB Report
EGAF00005316457 fastq.gz 25.9 GB Report
EGAF00005316458 fastq.gz 8.0 GB Report
EGAF00005316459 fastq.gz 29.7 GB Report
EGAF00005316460 fastq.gz 5.8 GB Report
EGAF00005316461 fastq.gz 21.6 GB Report
EGAF00005316462 fastq.gz 5.9 GB Report
EGAF00005316463 fastq.gz 26.8 GB Report
EGAF00005316464 fastq.gz 5.7 GB Report
EGAF00005316465 fastq.gz 26.1 GB Report
EGAF00005316466 fastq.gz 3.8 GB Report
EGAF00005316467 fastq.gz 14.0 GB Report
EGAF00005316468 fastq.gz 10.4 GB Report
EGAF00005316469 fastq.gz 39.4 GB Report
EGAF00005316470 fastq.gz 2.5 GB Report
EGAF00005316471 fastq.gz 9.2 GB Report
EGAF00005316472 fastq.gz 11.3 GB Report
EGAF00005316473 fastq.gz 42.4 GB Report
EGAF00005316474 fastq.gz 8.7 GB Report
EGAF00005316475 fastq.gz 33.3 GB Report
EGAF00005316476 fastq.gz 10.3 GB Report
EGAF00005316477 fastq.gz 39.3 GB Report
EGAF00005316478 fastq.gz 2.3 GB Report
EGAF00005316479 fastq.gz 8.7 GB Report
EGAF00005316480 fastq.gz 2.5 GB Report
EGAF00005316481 fastq.gz 9.6 GB Report
EGAF00005316482 fastq.gz 6.3 GB Report
EGAF00005316483 fastq.gz 29.1 GB Report
EGAF00005316484 fastq.gz 5.5 GB Report
EGAF00005316485 fastq.gz 25.1 GB Report
EGAF00005316486 fastq.gz 5.9 GB Report
EGAF00005316487 fastq.gz 21.9 GB Report
EGAF00005316488 fastq.gz 8.1 GB Report
EGAF00005316489 fastq.gz 31.3 GB Report
EGAF00005316490 fastq.gz 9.2 GB Report
EGAF00005316491 fastq.gz 34.5 GB Report
EGAF00005316492 fastq.gz 10.4 GB Report
EGAF00005316493 fastq.gz 39.0 GB Report
EGAF00005316494 fastq.gz 5.9 GB Report
EGAF00005316495 fastq.gz 21.8 GB Report
EGAF00005316496 fastq.gz 6.1 GB Report
EGAF00005316497 fastq.gz 27.8 GB Report
EGAF00005316498 fastq.gz 5.5 GB Report
EGAF00005316499 fastq.gz 24.6 GB Report
EGAF00005316500 fastq.gz 6.1 GB Report
EGAF00005316501 fastq.gz 28.6 GB Report
EGAF00005316502 fastq.gz 5.4 GB Report
EGAF00005316503 fastq.gz 25.2 GB Report
EGAF00005316504 fastq.gz 5.5 GB Report
EGAF00005316505 fastq.gz 24.9 GB Report
EGAF00005316506 fastq.gz 5.6 GB Report
EGAF00005316507 fastq.gz 26.2 GB Report
EGAF00005316508 fastq.gz 5.0 GB Report
EGAF00005316509 fastq.gz 23.0 GB Report
EGAF00005316510 fastq.gz 9.7 GB Report
EGAF00005316511 fastq.gz 36.5 GB Report
EGAF00005316512 fastq.gz 2.4 GB Report
EGAF00005316513 fastq.gz 9.0 GB Report
EGAF00005316514 fastq.gz 6.2 GB Report
EGAF00005316515 fastq.gz 28.4 GB Report
EGAF00005316516 fastq.gz 11.2 GB Report
EGAF00005316517 fastq.gz 42.7 GB Report
EGAF00005316518 fastq.gz 3.7 GB Report
EGAF00005316519 fastq.gz 13.4 GB Report
EGAF00005316520 fastq.gz 2.9 GB Report
EGAF00005316521 fastq.gz 10.7 GB Report
EGAF00005316522 fastq.gz 5.4 GB Report
EGAF00005316523 fastq.gz 19.7 GB Report
EGAF00005316524 fastq.gz 5.1 GB Report
EGAF00005316525 fastq.gz 24.0 GB Report
EGAF00005316526 fastq.gz 8.3 GB Report
EGAF00005316527 fastq.gz 31.2 GB Report
EGAF00005316528 fastq.gz 10.9 GB Report
EGAF00005316529 fastq.gz 40.0 GB Report
EGAF00005316530 fastq.gz 5.9 GB Report
EGAF00005316531 fastq.gz 27.7 GB Report
EGAF00005316532 fastq.gz 5.6 GB Report
EGAF00005316533 fastq.gz 26.6 GB Report
EGAF00005316534 fastq.gz 5.9 GB Report
EGAF00005316535 fastq.gz 26.7 GB Report
EGAF00005316536 fastq.gz 5.7 GB Report
EGAF00005316537 fastq.gz 26.3 GB Report
EGAF00005316538 fastq.gz 5.3 GB Report
EGAF00005316539 fastq.gz 24.2 GB Report
EGAF00005316540 fastq.gz 5.4 GB Report
EGAF00005316541 fastq.gz 24.3 GB Report
EGAF00005316542 fastq.gz 5.1 GB Report
EGAF00005316543 fastq.gz 23.4 GB Report
EGAF00005316544 fastq.gz 11.0 GB Report
EGAF00005316545 fastq.gz 41.0 GB Report
EGAF00005316546 fastq.gz 6.6 GB Report
EGAF00005316547 fastq.gz 30.2 GB Report
EGAF00005316548 fastq.gz 5.9 GB Report
EGAF00005316549 fastq.gz 27.3 GB Report
EGAF00005316550 fastq.gz 9.6 GB Report
EGAF00005316551 fastq.gz 36.7 GB Report
EGAF00005316552 fastq.gz 11.0 GB Report
EGAF00005316553 fastq.gz 42.2 GB Report
EGAF00005316554 fastq.gz 5.4 GB Report
EGAF00005316555 fastq.gz 23.6 GB Report
EGAF00005316556 fastq.gz 2.7 GB Report
EGAF00005316557 fastq.gz 9.7 GB Report
EGAF00005316558 fastq.gz 6.1 GB Report
EGAF00005316559 fastq.gz 27.7 GB Report
EGAF00005316560 fastq.gz 6.0 GB Report
EGAF00005316561 fastq.gz 26.3 GB Report
EGAF00005316562 fastq.gz 4.9 GB Report
EGAF00005316563 fastq.gz 22.7 GB Report
EGAF00005316564 fastq.gz 5.8 GB Report
EGAF00005316565 fastq.gz 22.1 GB Report
EGAF00005316566 fastq.gz 10.1 GB Report
EGAF00005316567 fastq.gz 38.4 GB Report
EGAF00005316568 fastq.gz 5.9 GB Report
EGAF00005316569 fastq.gz 27.3 GB Report
EGAF00005316570 fastq.gz 6.1 GB Report
EGAF00005316571 fastq.gz 27.5 GB Report
EGAF00005316572 fastq.gz 5.7 GB Report
EGAF00005316573 fastq.gz 26.3 GB Report
EGAF00005316574 fastq.gz 1.9 GB Report
EGAF00005316575 fastq.gz 6.9 GB Report
EGAF00005316576 fastq.gz 4.8 GB Report
EGAF00005316577 fastq.gz 22.2 GB Report
EGAF00005316578 fastq.gz 2.2 GB Report
EGAF00005316579 fastq.gz 8.0 GB Report
EGAF00005316580 fastq.gz 8.5 GB Report
EGAF00005316581 fastq.gz 32.9 GB Report
EGAF00005316582 fastq.gz 6.9 GB Report
EGAF00005316583 fastq.gz 31.9 GB Report
EGAF00005316584 fastq.gz 5.6 GB Report
EGAF00005316585 fastq.gz 25.0 GB Report
EGAF00005316586 fastq.gz 5.3 GB Report
EGAF00005316587 fastq.gz 23.7 GB Report
EGAF00005316588 fastq.gz 7.6 GB Report
EGAF00005316589 fastq.gz 27.7 GB Report
EGAF00005316590 fastq.gz 8.2 GB Report
EGAF00005316591 fastq.gz 31.0 GB Report
EGAF00005316592 fastq.gz 6.1 GB Report
EGAF00005316593 fastq.gz 28.2 GB Report
EGAF00005316594 fastq.gz 5.5 GB Report
EGAF00005316595 fastq.gz 20.1 GB Report
EGAF00005316596 fastq.gz 6.0 GB Report
EGAF00005316597 fastq.gz 27.3 GB Report
EGAF00005316598 fastq.gz 6.0 GB Report
EGAF00005316599 fastq.gz 22.3 GB Report
EGAF00005316600 fastq.gz 8.3 GB Report
EGAF00005316601 fastq.gz 31.6 GB Report
EGAF00005316602 fastq.gz 10.5 GB Report
EGAF00005316603 fastq.gz 39.6 GB Report
EGAF00005316604 fastq.gz 8.1 GB Report
EGAF00005316605 fastq.gz 29.5 GB Report
EGAF00005316606 fastq.gz 5.3 GB Report
EGAF00005316607 fastq.gz 24.0 GB Report
EGAF00005316608 fastq.gz 5.6 GB Report
EGAF00005316609 fastq.gz 25.4 GB Report
EGAF00005316610 fastq.gz 6.4 GB Report
EGAF00005316611 fastq.gz 30.4 GB Report
EGAF00005316612 fastq.gz 5.8 GB Report
EGAF00005316613 fastq.gz 21.7 GB Report
EGAF00005316614 fastq.gz 8.0 GB Report
EGAF00005316615 fastq.gz 31.0 GB Report
EGAF00005316616 fastq.gz 6.1 GB Report
EGAF00005316617 fastq.gz 22.5 GB Report
EGAF00005316618 fastq.gz 7.6 GB Report
EGAF00005316619 fastq.gz 28.2 GB Report
EGAF00005316620 fastq.gz 5.8 GB Report
EGAF00005316621 fastq.gz 21.6 GB Report
EGAF00005316622 fastq.gz 10.7 GB Report
EGAF00005316623 fastq.gz 40.3 GB Report
EGAF00005316624 fastq.gz 8.4 GB Report
EGAF00005316625 fastq.gz 32.5 GB Report
EGAF00005316626 fastq.gz 7.5 GB Report
EGAF00005316627 fastq.gz 28.7 GB Report
EGAF00005316628 fastq.gz 9.4 GB Report
EGAF00005316629 fastq.gz 35.6 GB Report
EGAF00005316630 fastq.gz 10.6 GB Report
EGAF00005316631 fastq.gz 40.8 GB Report
EGAF00005316632 fastq.gz 9.4 GB Report
EGAF00005316633 fastq.gz 35.7 GB Report
EGAF00005316634 fastq.gz 5.7 GB Report
EGAF00005316635 fastq.gz 26.0 GB Report
EGAF00005316636 fastq.gz 7.7 GB Report
EGAF00005316637 fastq.gz 29.5 GB Report
EGAF00005316638 fastq.gz 4.8 GB Report
EGAF00005316639 fastq.gz 22.0 GB Report
EGAF00005316640 fastq.gz 6.9 GB Report
EGAF00005316641 fastq.gz 32.6 GB Report
EGAF00005316642 fastq.gz 11.6 GB Report
EGAF00005316643 fastq.gz 43.6 GB Report
EGAF00005316644 fastq.gz 6.0 GB Report
EGAF00005316645 fastq.gz 27.4 GB Report
EGAF00005316646 fastq.gz 5.5 GB Report
EGAF00005316647 fastq.gz 25.2 GB Report
EGAF00005316648 fastq.gz 10.3 GB Report
EGAF00005316649 fastq.gz 39.1 GB Report
EGAF00005316650 fastq.gz 5.7 GB Report
EGAF00005316651 fastq.gz 26.5 GB Report
EGAF00005316652 fastq.gz 5.9 GB Report
EGAF00005316653 fastq.gz 27.7 GB Report
EGAF00005316654 fastq.gz 10.7 GB Report
EGAF00005316655 fastq.gz 40.8 GB Report
EGAF00005316656 fastq.gz 5.4 GB Report
EGAF00005316657 fastq.gz 19.8 GB Report
EGAF00005316658 fastq.gz 2.8 GB Report
EGAF00005316659 fastq.gz 10.3 GB Report
EGAF00005316660 fastq.gz 5.5 GB Report
EGAF00005316661 fastq.gz 25.3 GB Report
EGAF00005316662 fastq.gz 5.5 GB Report
EGAF00005316663 fastq.gz 25.0 GB Report
EGAF00005316664 fastq.gz 6.1 GB Report
EGAF00005316665 fastq.gz 27.7 GB Report
EGAF00005316666 fastq.gz 6.2 GB Report
EGAF00005316667 fastq.gz 28.3 GB Report
EGAF00005316668 fastq.gz 5.9 GB Report
EGAF00005316669 fastq.gz 27.1 GB Report
EGAF00005316670 fastq.gz 6.0 GB Report
EGAF00005316671 fastq.gz 27.5 GB Report
EGAF00005316672 fastq.gz 5.8 GB Report
EGAF00005316673 fastq.gz 26.0 GB Report
EGAF00005316674 fastq.gz 5.4 GB Report
EGAF00005316675 fastq.gz 24.7 GB Report
EGAF00005316676 fastq.gz 8.3 GB Report
EGAF00005316677 fastq.gz 31.9 GB Report
EGAF00005316678 fastq.gz 5.4 GB Report
EGAF00005316679 fastq.gz 24.5 GB Report
EGAF00005316680 fastq.gz 5.8 GB Report
EGAF00005316681 fastq.gz 27.7 GB Report
EGAF00005316682 fastq.gz 5.5 GB Report
EGAF00005316683 fastq.gz 25.4 GB Report
EGAF00005316684 fastq.gz 5.5 GB Report
EGAF00005316685 fastq.gz 20.2 GB Report
EGAF00005316686 fastq.gz 2.7 GB Report
EGAF00005316687 fastq.gz 10.2 GB Report
EGAF00005316688 fastq.gz 6.0 GB Report
EGAF00005316689 fastq.gz 27.1 GB Report
EGAF00005316690 fastq.gz 5.8 GB Report
EGAF00005316691 fastq.gz 26.4 GB Report
EGAF00005316692 fastq.gz 5.4 GB Report
EGAF00005316693 fastq.gz 25.2 GB Report
EGAF00005316694 fastq.gz 5.5 GB Report
EGAF00005316695 fastq.gz 25.7 GB Report
EGAF00005316696 fastq.gz 8.2 GB Report
EGAF00005316697 fastq.gz 31.7 GB Report
EGAF00005316698 fastq.gz 5.0 GB Report
EGAF00005316699 fastq.gz 18.3 GB Report
EGAF00005316700 fastq.gz 5.5 GB Report
EGAF00005316701 fastq.gz 25.4 GB Report
EGAF00005316702 fastq.gz 5.5 GB Report
EGAF00005316703 fastq.gz 26.0 GB Report
EGAF00005316704 fastq.gz 6.2 GB Report
EGAF00005316705 fastq.gz 28.2 GB Report
EGAF00005316706 fastq.gz 5.7 GB Report
EGAF00005316707 fastq.gz 25.5 GB Report
EGAF00005316708 fastq.gz 8.6 GB Report
EGAF00005316709 fastq.gz 33.1 GB Report
EGAF00005316710 fastq.gz 9.7 GB Report
EGAF00005316711 fastq.gz 35.6 GB Report
EGAF00005316712 csv 8.6 kB
297 Files (4.9 TB)