Sequencing data associated with Smith et al, Acta Neuropathologica, 2020 (PMID: 32519082)
The dataset includes 144 BAM files of WGS, WES, and RNA-seq data from primary and PDOX samples analyzed in Smith et al, Acta Neuropathologica, 2020 (PMID: 32519082).
- 09/08/2021
- 144 samples
- DAC: EGAC00001002260
- Technology: unspecified
Primary patient pediatric brain tumors from patients treated at SJCRH were implanted and amplified only in the brain of immunocompromised mice without tissue culture steps and referred as patient-derived orthotopic xenografts (Smith et al, Acta Neuropathologica, 2020). Associated sequencing data including WGS, WES, and RNA-seq are deposited here. Policy is required for access, research use and citations of the dataset.
Policy URL: https://drive.google.com/file/d/1gbh4YIEad9GkXz5F3wNY_As9SWxv03Ny/view
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001005533 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00005422794 | bam | 7.8 GB | Report |
|
| EGAF00005422795 | bam | 5.9 GB | Report |
|
| EGAF00005422796 | bam | 6.9 GB | Report |
|
| EGAF00005422797 | bam | 7.7 GB | Report |
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| EGAF00005422798 | bam | 7.9 GB | Report |
|
| EGAF00005422799 | bam | 4.7 GB | Report |
|
| EGAF00005422800 | bam | 8.0 GB | Report |
|
| EGAF00005422801 | bam | 2.6 GB | Report |
|
| EGAF00005422802 | bam | 3.3 GB | Report |
|
| EGAF00005422803 | bam | 6.7 GB | Report |
|
| EGAF00005422804 | bam | 7.0 GB | Report |
|
| EGAF00005422805 | bam | 10.9 GB | Report |
|
| EGAF00005422806 | bam | 97.5 GB | Report |
|
| EGAF00005422807 | bam | 88.9 GB | Report |
|
| EGAF00005422808 | bam | 5.2 GB | Report |
|
| EGAF00005422809 | bam | 97.3 GB | Report |
|
| EGAF00005422810 | bam | 5.8 GB | Report |
|
| EGAF00005422811 | bam | 7.6 GB | Report |
|
| EGAF00005422812 | bam | 14.1 GB | Report |
|
| EGAF00005422813 | bam | 9.1 GB | Report |
|
| EGAF00005422814 | bam | 11.7 GB | Report |
|
| EGAF00005422815 | bam | 6.6 GB | Report |
|
| EGAF00005422816 | bam | 7.0 GB | Report |
|
| EGAF00005422817 | bam | 64.8 GB | Report |
|
| EGAF00005422818 | bam | 3.5 GB | Report |
|
| EGAF00005422819 | bam | 10.6 GB | Report |
|
| EGAF00005422820 | bam | 7.9 GB | Report |
|
| EGAF00005422821 | bam | 7.0 GB | Report |
|
| EGAF00005422822 | bam | 6.7 GB | Report |
|
| EGAF00005422823 | bam | 7.9 GB | Report |
|
| EGAF00005422824 | bam | 5.5 GB | Report |
|
| EGAF00005422825 | bam | 3.1 GB | Report |
|
| EGAF00005422826 | bam | 6.9 GB | Report |
|
| EGAF00005422827 | bam | 7.0 GB | Report |
|
| EGAF00005422828 | bam | 7.5 GB | Report |
|
| EGAF00005422829 | bam | 8.3 GB | Report |
|
| EGAF00005422830 | bam | 5.3 GB | Report |
|
| EGAF00005422831 | bam | 9.2 GB | Report |
|
| EGAF00005422832 | bam | 6.3 GB | Report |
|
| EGAF00005422833 | bam | 4.8 GB | Report |
|
| EGAF00005422834 | bam | 4.7 GB | Report |
|
| EGAF00005422835 | bam | 7.3 GB | Report |
|
| EGAF00005422836 | bam | 4.3 GB | Report |
|
| EGAF00005422837 | bam | 6.5 GB | Report |
|
| EGAF00005422838 | bam | 11.3 GB | Report |
|
| EGAF00005422839 | bam | 6.3 GB | Report |
|
| EGAF00005422840 | bam | 11.2 GB | Report |
|
| EGAF00005422841 | bam | 5.1 GB | Report |
|
| EGAF00005422842 | bam | 6.2 GB | Report |
|
| EGAF00005422843 | bam | 4.0 GB | Report |
|
| EGAF00005422844 | bam | 8.0 GB | Report |
|
| EGAF00005422845 | bam | 3.4 GB | Report |
|
| EGAF00005422846 | bam | 5.0 GB | Report |
|
| EGAF00005422847 | bam | 4.4 GB | Report |
|
| EGAF00005422848 | bam | 5.1 GB | Report |
|
| EGAF00005422849 | bam | 6.2 GB | Report |
|
| EGAF00005422850 | bam | 5.5 GB | Report |
|
| EGAF00005422851 | bam | 5.7 GB | Report |
|
| EGAF00005422852 | bam | 6.1 GB | Report |
|
| EGAF00005422853 | bam | 9.1 GB | Report |
|
| EGAF00005422854 | bam | 12.1 GB | Report |
|
| EGAF00005422855 | bam | 9.1 GB | Report |
|
| EGAF00005422856 | bam | 5.0 GB | Report |
|
| EGAF00005422857 | bam | 5.4 GB | Report |
|
| EGAF00005422858 | bam | 6.6 GB | Report |
|
| EGAF00005422859 | bam | 3.2 GB | Report |
|
| EGAF00005422860 | bam | 3.7 GB | Report |
|
| EGAF00005422861 | bam | 14.6 GB | Report |
|
| EGAF00005422862 | bam | 4.8 GB | Report |
|
| EGAF00005422863 | bam | 13.8 GB | Report |
|
| EGAF00005422864 | bam | 7.0 GB | Report |
|
| EGAF00005422865 | bam | 5.1 GB | Report |
|
| EGAF00005422866 | bam | 10.8 GB | Report |
|
| EGAF00005422867 | bam | 8.9 GB | Report |
|
| EGAF00005422868 | bam | 5.8 GB | Report |
|
| EGAF00005422869 | bam | 4.7 GB | Report |
|
| EGAF00005422870 | bam | 5.8 GB | Report |
|
| EGAF00005422871 | bam | 6.2 GB | Report |
|
| EGAF00005422872 | bam | 6.2 GB | Report |
|
| EGAF00005422873 | bam | 3.7 GB | Report |
|
| EGAF00005422874 | bam | 6.5 GB | Report |
|
| EGAF00005422875 | bam | 7.2 GB | Report |
|
| EGAF00005422876 | bam | 8.0 GB | Report |
|
| EGAF00005422877 | bam | 11.7 GB | Report |
|
| EGAF00005422878 | bam | 10.2 GB | Report |
|
| EGAF00005422879 | bam | 11.8 GB | Report |
|
| EGAF00005422880 | bam | 7.6 GB | Report |
|
| EGAF00005422881 | bam | 7.6 GB | Report |
|
| EGAF00005422882 | bam | 8.4 GB | Report |
|
| EGAF00005422883 | bam | 5.1 GB | Report |
|
| EGAF00005422884 | bam | 59.1 GB | Report |
|
| EGAF00005422885 | bam | 5.3 GB | Report |
|
| EGAF00005422886 | bam | 4.6 GB | Report |
|
| EGAF00005422887 | bam | 3.0 GB | Report |
|
| EGAF00005422888 | bam | 5.7 GB | Report |
|
| EGAF00005422889 | bam | 7.5 GB | Report |
|
| EGAF00005422890 | bam | 5.2 GB | Report |
|
| EGAF00005422891 | bam | 54.6 GB | Report |
|
| EGAF00005422892 | bam | 5.2 GB | Report |
|
| EGAF00005422893 | bam | 88.3 GB | Report |
|
| EGAF00005422894 | bam | 3.3 GB | Report |
|
| EGAF00005422895 | bam | 7.7 GB | Report |
|
| EGAF00005422896 | bam | 6.3 GB | Report |
|
| EGAF00005422897 | bam | 3.2 GB | Report |
|
| EGAF00005422898 | bam | 5.7 GB | Report |
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| EGAF00005422899 | bam | 6.6 GB | Report |
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| EGAF00005422900 | bam | 3.8 GB | Report |
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| EGAF00005422901 | bam | 6.8 GB | Report |
|
| EGAF00005422902 | bam | 57.8 GB | Report |
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| EGAF00005422903 | bam | 5.5 GB | Report |
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| EGAF00005422904 | bam | 6.1 GB | Report |
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| EGAF00005422905 | bam | 51.7 GB | Report |
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| EGAF00005422906 | bam | 4.6 GB | Report |
|
| EGAF00005422907 | bam | 8.1 GB | Report |
|
| EGAF00005422908 | bam | 97.4 GB | Report |
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| EGAF00005422909 | bam | 101.8 GB | Report |
|
| EGAF00005422910 | bam | 35.9 GB | Report |
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| EGAF00005422911 | bam | 50.9 GB | Report |
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| EGAF00005422912 | bam | 4.0 GB | Report |
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| EGAF00005422913 | bam | 13.3 GB | Report |
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| EGAF00005422914 | bam | 4.0 GB | Report |
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| EGAF00005422915 | bam | 4.5 GB | Report |
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| EGAF00005422916 | bam | 4.7 GB | Report |
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| EGAF00005422917 | bam | 7.8 GB | Report |
|
| EGAF00005422918 | bam | 6.5 GB | Report |
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| EGAF00005422919 | bam | 5.9 GB | Report |
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| EGAF00005422920 | bam | 4.0 GB | Report |
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| EGAF00005422921 | bam | 7.4 GB | Report |
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| EGAF00005422922 | bam | 5.7 GB | Report |
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| EGAF00005422923 | bam | 2.7 GB |
|
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| EGAF00005422924 | bam | 7.6 GB | Report |
|
| EGAF00005422925 | bam | 7.5 GB | Report |
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| EGAF00005422926 | bam | 5.6 GB | Report |
|
| EGAF00005422927 | bam | 8.3 GB | Report |
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| EGAF00005422928 | bam | 4.9 GB | Report |
|
| EGAF00005422929 | bam | 7.1 GB | Report |
|
| EGAF00005422930 | bam | 13.4 GB | Report |
|
| EGAF00005422931 | bam | 6.6 GB | Report |
|
| EGAF00005422932 | bam | 8.6 GB | Report |
|
| EGAF00005422933 | bam | 6.3 GB | Report |
|
| EGAF00005422934 | bam | 5.2 GB | Report |
|
| EGAF00005422935 | bam | 5.5 GB | Report |
|
| EGAF00005422936 | bam | 7.2 GB | Report |
|
| EGAF00005422937 | bam | 8.7 GB | Report |
|
| 144 Files (1.8 TB) | ||||