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Mitochondrial DNA sequencing of human iPSC, parental cells, and iPSC derived cardiomyocytes

Dataset contains whole mitochondrial DNA sequencing data in fastq format (Illumina MiSeq paired-end) of 62 samples, in total. Those samples include sequencing data of the endothelial cell populations of 10 different donors and of 26 early-passage iPSC clones derived thereof. Moreover, the dataset contains the data of 7 of those iPSC clones sequenced additionally in passage 30 and 50, each. Lastly, 4 iPSC clones were sequenced during directed cardiomyocyte differentiation, each at day 0, 5, and 15 of differentiation.

Request Access

Data access policy for sequencing data generated in LEBAO at Hannover Medical School

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom LEBAO Data access committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: LEBAO Data access committee and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. LEBAO Data access committee: Ulrich Martin, PhD Professor and Head Leibniz Research Labs for Biotechnology and Artificial Organs (LEBAO), Department of Cardiothoracic-, Transplantation and Vascular Surgery REBIRTH – Research Center for Translational Regenerative Medicine, Hannover Medical School (MHH), Hannover, Germany 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify LEBAO Data access committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify LEBAO Data access committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify LEBAO Data access committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. LEBAO Data access committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than LEBAO Data access committee. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Germany. APPENDIX I – DATASET DETAILS This form with detailed information regarding the requested dataset and will be handed out upon data request together with the data access agreement for signing. APPENDIX II ––PROJECT DETAILS This form will be handed out upon data request and has to be completed by the Requestor. It outlines the details of dataset requested, a brief abstract of the Project in which the Data will be used, and a list of authorised personnel of the User Institution that should obtain access to the data. APPENDIX III –– PUBLICATION POLICY In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database and its accession numbers, and acknowledge its use in a form agreed by the User Institution with LEBAO Data access committee.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005560 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005444600 fastq.gz 286.5 MB
EGAF00005444601 fastq.gz 336.3 MB
EGAF00005444602 fastq.gz 65.1 MB
EGAF00005444603 fastq.gz 79.8 MB
EGAF00005444604 fastq.gz 206.8 MB
EGAF00005444605 fastq.gz 249.7 MB
EGAF00005444606 fastq.gz 234.5 MB
EGAF00005444607 fastq.gz 278.2 MB
EGAF00005444608 fastq.gz 283.2 MB
EGAF00005444609 fastq.gz 373.7 MB
EGAF00005444610 fastq.gz 230.1 MB
EGAF00005444611 fastq.gz 316.3 MB
EGAF00005444612 fastq.gz 105.7 MB
EGAF00005444613 fastq.gz 113.0 MB
EGAF00005444614 fastq.gz 106.0 MB
EGAF00005444615 fastq.gz 113.1 MB
EGAF00005444616 fastq.gz 251.7 MB
EGAF00005444617 fastq.gz 338.7 MB
EGAF00005444618 fastq.gz 65.7 MB
EGAF00005444619 fastq.gz 71.0 MB
EGAF00005444620 fastq.gz 81.6 MB
EGAF00005444621 fastq.gz 109.0 MB
EGAF00005444622 fastq.gz 68.2 MB
EGAF00005444623 fastq.gz 84.3 MB
EGAF00005444624 fastq.gz 56.0 MB
EGAF00005444625 fastq.gz 67.3 MB
EGAF00005444626 fastq.gz 104.9 MB
EGAF00005444627 fastq.gz 114.0 MB
EGAF00005444628 fastq.gz 341.6 MB
EGAF00005444629 fastq.gz 455.6 MB
EGAF00005444630 fastq.gz 55.4 MB
EGAF00005444631 fastq.gz 66.7 MB
EGAF00005444632 fastq.gz 115.0 MB
EGAF00005444633 fastq.gz 123.7 MB
EGAF00005444634 fastq.gz 123.5 MB
EGAF00005444635 fastq.gz 133.0 MB
EGAF00005444636 fastq.gz 99.2 MB
EGAF00005444637 fastq.gz 106.4 MB
EGAF00005444638 fastq.gz 58.3 MB
EGAF00005444639 fastq.gz 71.2 MB
EGAF00005444640 fastq.gz 59.1 MB
EGAF00005444641 fastq.gz 71.3 MB
EGAF00005444642 fastq.gz 280.7 MB
EGAF00005444643 fastq.gz 329.8 MB
EGAF00005444644 fastq.gz 282.7 MB
EGAF00005444645 fastq.gz 319.7 MB
EGAF00005444646 fastq.gz 62.4 MB
EGAF00005444647 fastq.gz 75.0 MB
EGAF00005444648 fastq.gz 71.4 MB
EGAF00005444649 fastq.gz 83.6 MB
EGAF00005444650 fastq.gz 270.7 MB
EGAF00005444651 fastq.gz 322.4 MB
EGAF00005444652 fastq.gz 119.5 MB
EGAF00005444653 fastq.gz 128.4 MB
EGAF00005444654 fastq.gz 243.9 MB
EGAF00005444655 fastq.gz 288.5 MB
EGAF00005444656 fastq.gz 273.9 MB
EGAF00005444657 fastq.gz 371.0 MB
EGAF00005444658 fastq.gz 62.1 MB
EGAF00005444659 fastq.gz 74.9 MB
EGAF00005444660 fastq.gz 290.6 MB
EGAF00005444661 fastq.gz 343.9 MB
EGAF00005444662 fastq.gz 63.2 MB
EGAF00005444663 fastq.gz 82.6 MB
EGAF00005444664 fastq.gz 59.7 MB
EGAF00005444665 fastq.gz 72.2 MB
EGAF00005444666 fastq.gz 105.1 MB
EGAF00005444667 fastq.gz 114.4 MB
EGAF00005444668 fastq.gz 95.3 MB
EGAF00005444669 fastq.gz 102.4 MB
EGAF00005444670 fastq.gz 92.6 MB
EGAF00005444671 fastq.gz 99.8 MB
EGAF00005444672 fastq.gz 95.0 MB
EGAF00005444673 fastq.gz 113.1 MB
EGAF00005444674 fastq.gz 229.3 MB
EGAF00005444675 fastq.gz 271.4 MB
EGAF00005444676 fastq.gz 239.7 MB
EGAF00005444677 fastq.gz 280.4 MB
EGAF00005444678 fastq.gz 222.0 MB
EGAF00005444679 fastq.gz 255.5 MB
EGAF00005444680 fastq.gz 101.6 MB
EGAF00005444681 fastq.gz 109.5 MB
EGAF00005444682 fastq.gz 62.0 MB
EGAF00005444683 fastq.gz 75.1 MB
EGAF00005444684 fastq.gz 118.0 MB
EGAF00005444685 fastq.gz 127.5 MB
EGAF00005444686 fastq.gz 123.0 MB
EGAF00005444687 fastq.gz 137.6 MB
EGAF00005444688 fastq.gz 119.4 MB
EGAF00005444689 fastq.gz 128.7 MB
EGAF00005444690 fastq.gz 210.7 MB
EGAF00005444691 fastq.gz 278.0 MB
EGAF00005444692 fastq.gz 220.3 MB
EGAF00005444693 fastq.gz 265.9 MB
EGAF00005444694 fastq.gz 118.3 MB
EGAF00005444695 fastq.gz 133.0 MB
EGAF00005444696 fastq.gz 199.3 MB
EGAF00005444697 fastq.gz 236.3 MB
EGAF00005444698 fastq.gz 54.4 MB
EGAF00005444699 fastq.gz 66.0 MB
EGAF00005444700 fastq.gz 58.0 MB
EGAF00005444701 fastq.gz 70.5 MB
EGAF00005444702 fastq.gz 104.1 MB
EGAF00005444703 fastq.gz 112.0 MB
EGAF00005444704 fastq.gz 113.6 MB
EGAF00005444705 fastq.gz 123.8 MB
EGAF00005444706 fastq.gz 209.2 MB
EGAF00005444707 fastq.gz 242.2 MB
EGAF00005444708 fastq.gz 65.6 MB
EGAF00005444709 fastq.gz 77.3 MB
EGAF00005444710 fastq.gz 95.7 MB
EGAF00005444711 fastq.gz 103.6 MB
EGAF00005444712 fastq.gz 58.0 MB
EGAF00005444713 fastq.gz 70.1 MB
EGAF00005444714 fastq.gz 54.2 MB
EGAF00005444715 fastq.gz 73.8 MB
EGAF00005444716 fastq.gz 204.0 MB
EGAF00005444717 fastq.gz 249.0 MB
EGAF00005444718 fastq.gz 291.9 MB
EGAF00005444719 fastq.gz 346.0 MB
EGAF00005444720 fastq.gz 62.0 MB
EGAF00005444721 fastq.gz 75.5 MB
EGAF00005444722 fastq.gz 156.2 MB
EGAF00005444723 fastq.gz 193.0 MB
124 Files (19.7 GB)