Need Help?

Development and Validation of a Prognostic and Predictive 32-Gene Signature for Gastric Cancer

We applied this signature to a 567-patient GC cohort to establish genomic-based molecular subtypes and then used a support vector machine to build a molecular subtype-based risk-scoring model. Both source code and supplementary datasets for risk score prediction are available at https://github.com/hwanglab/Yonsei_gastric_cancer_32genes.

Request Access

We applied this signature to a 567-patient GC cohort to establish genomic-based molecular subtypes and then used a support vector machine to build a molecular subtype-based risk-scoring model. Both source code and supplementary datasets for risk score prediction are available at https://github.com/hwanglab/Yonsei_gastric_cancer_32genes.

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify XXXXX within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify XXXXX prior to any significant changes to the protocol for the Project. 14. The User Institution will notify XXXXX as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. XXXXX may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than XXXXX. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005588 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005466962 fastq.gz 5.8 GB
EGAF00005466963 fastq.gz 6.0 GB
EGAF00005466964 fastq.gz 7.2 GB
EGAF00005466965 fastq.gz 7.4 GB
EGAF00005466966 fastq.gz 4.9 GB
EGAF00005466967 fastq.gz 5.7 GB
EGAF00005466968 fastq.gz 5.4 GB
EGAF00005466969 fastq.gz 6.1 GB
EGAF00005466970 fastq.gz 5.0 GB
EGAF00005466971 fastq.gz 5.2 GB
EGAF00005466972 fastq.gz 5.1 GB
EGAF00005466973 fastq.gz 5.9 GB
EGAF00005466974 fastq.gz 5.4 GB
EGAF00005466975 fastq.gz 5.6 GB
EGAF00005466976 fastq.gz 5.3 GB
EGAF00005466977 fastq.gz 5.6 GB
EGAF00005466978 fastq.gz 4.0 GB
EGAF00005466979 fastq.gz 4.4 GB
EGAF00005466980 fastq.gz 5.0 GB
EGAF00005466981 fastq.gz 5.8 GB
EGAF00005466982 fastq.gz 4.9 GB
EGAF00005466983 fastq.gz 5.5 GB
EGAF00005466984 fastq.gz 5.5 GB
EGAF00005466985 fastq.gz 6.3 GB
EGAF00005466986 fastq.gz 6.8 GB
EGAF00005466987 fastq.gz 7.1 GB
EGAF00005466988 fastq.gz 5.2 GB
EGAF00005466989 fastq.gz 5.4 GB
EGAF00005466990 fastq.gz 7.4 GB
EGAF00005466991 fastq.gz 7.8 GB
EGAF00005466992 fastq.gz 7.5 GB
EGAF00005466993 fastq.gz 7.8 GB
EGAF00005466994 fastq.gz 4.9 GB
EGAF00005466995 fastq.gz 5.7 GB
EGAF00005466996 fastq.gz 5.5 GB
EGAF00005466997 fastq.gz 6.4 GB
EGAF00005466998 fastq.gz 5.2 GB
EGAF00005466999 fastq.gz 5.3 GB
EGAF00005467000 fastq.gz 4.5 GB
EGAF00005467001 fastq.gz 5.2 GB
EGAF00005467002 fastq.gz 6.7 GB
EGAF00005467003 fastq.gz 7.0 GB
EGAF00005467004 fastq.gz 6.9 GB
EGAF00005467005 fastq.gz 7.2 GB
EGAF00005467006 fastq.gz 8.6 GB
EGAF00005467007 fastq.gz 8.9 GB
EGAF00005467008 fastq.gz 5.1 GB
EGAF00005467009 fastq.gz 5.2 GB
EGAF00005467010 fastq.gz 5.8 GB
EGAF00005467011 fastq.gz 6.8 GB
EGAF00005467012 fastq.gz 5.2 GB
EGAF00005467013 fastq.gz 6.1 GB
EGAF00005467014 fastq.gz 6.3 GB
EGAF00005467015 fastq.gz 6.6 GB
EGAF00005467016 fastq.gz 5.1 GB
EGAF00005467017 fastq.gz 5.4 GB
EGAF00005555582 fastq.gz 2.5 GB
EGAF00005555583 fastq.gz 2.6 GB
EGAF00005555584 fastq.gz 2.9 GB
EGAF00005555585 fastq.gz 2.9 GB
EGAF00005555586 fastq.gz 2.9 GB
EGAF00005555587 fastq.gz 3.0 GB
EGAF00005555588 fastq.gz 2.4 GB
EGAF00005555589 fastq.gz 2.5 GB
EGAF00005555590 fastq.gz 2.5 GB
EGAF00005555591 fastq.gz 2.7 GB
EGAF00005555592 fastq.gz 2.5 GB
EGAF00005555593 fastq.gz 2.6 GB
EGAF00005555594 fastq.gz 3.0 GB
EGAF00005555595 fastq.gz 3.1 GB
EGAF00005555596 fastq.gz 2.3 GB
EGAF00005555597 fastq.gz 2.3 GB
EGAF00005555598 fastq.gz 2.6 GB
EGAF00005555599 fastq.gz 2.8 GB
EGAF00005555600 fastq.gz 2.5 GB
EGAF00005555601 fastq.gz 2.5 GB
EGAF00005555602 fastq.gz 2.8 GB
EGAF00005555603 fastq.gz 2.8 GB
EGAF00005555604 fastq.gz 2.7 GB
EGAF00005555605 fastq.gz 2.9 GB
EGAF00005555606 fastq.gz 2.6 GB
EGAF00005555607 fastq.gz 2.6 GB
EGAF00005555608 fastq.gz 2.8 GB
EGAF00005555609 fastq.gz 2.9 GB
EGAF00005555610 fastq.gz 2.7 GB
EGAF00005555611 fastq.gz 2.8 GB
EGAF00005555612 fastq.gz 2.7 GB
EGAF00005555613 fastq.gz 2.9 GB
EGAF00005555614 fastq.gz 2.8 GB
EGAF00005555615 fastq.gz 2.8 GB
90 Files (425.6 GB)