Browse files

Dataset

Targeted and Whole Exome Sequencing for Validation of PGDx elio tissue complete

Dataset ID	Technology	Samples
EGAD00001008099	Illumina HiSeq 2500,NextSeq 500	876

Dataset Description

This dataset consists of 116 tumor and normal samples analyzed with whole exome sequencing on the HiSeq2500 instruments with 100bp paired-end reads as well as 760 tumor and normal samples analyzed with the PGDx elio tissue complete assay. The PGDx elio tissue complete assay is a hybrid capture approach targeting 500+ genes with sequencing on the NextSeq instruments with 150bp paired-end reads. The bam files provided have been adapter masked and contain duplicate reads.

Data Use Conditions

HMB

See further information on Data Use Conditions

Label	Code	Version	Modifier
health or medical or biomedical research	DUO:0000006	2019-01-07

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

PGDx elio tissue complete Validation Data Access Committee
Contact person: Mark Sausen
Email: msausen [at] pgdx [dot] com
More details: EGAC00001002278

Downloads

You don't have access to the download section.

This dataset is featured in 1 study

Studies are experimental investigations of a particular phenomenon. e.g. case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients. Click on one of the Study IDs below to find out more.

Study ID	Study Title	Study Type
EGAS00001005556	Automated machine-learning approach for next generation profiling of sequence alterations, mutation burden, microsatellite instability, and structural variants in human cancers	Other

EGA Beacon