Shallow whole genome sequencing and targeted sequencing of DLBCL patients treated in the HOVON84 trial

220 samples
DAC: EGAC00001000181
Technology: Illumina HiSeq 4000

Access Policy1 Study Files

Metadata

Request Access

Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001003949	Molecular profiling of DLBCL patients treated in the HOVON84 trial	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00005727358	bam	691.9 MB
EGAF00005727359	bam	741.8 MB
EGAF00005727360	bam	1.4 GB
EGAF00005727361	bam	1.3 GB
EGAF00005727362	bam	1.0 GB
EGAF00005727363	bam	546.3 MB
EGAF00005727364	bam	2.6 GB
EGAF00005727365	bam	1.5 GB
EGAF00005727366	bam	319.2 MB
EGAF00005727367	bam	761.9 MB
EGAF00005727368	bam	518.0 MB
EGAF00005727369	bam	232.2 MB
EGAF00005727370	bam	3.8 GB
EGAF00005727371	bam	461.2 MB
EGAF00005727372	bam	1.5 GB
EGAF00005727373	bam	833.5 MB
EGAF00005727374	bam	1.1 GB
EGAF00005727375	bam	2.9 GB
EGAF00005727376	bam	1.3 GB
EGAF00005727377	bam	1.3 GB
EGAF00005727378	bam	3.8 GB
EGAF00005727379	bam	1.5 GB
EGAF00005727380	bam	1.5 GB
EGAF00005727381	bam	423.9 MB
EGAF00005727382	bam	1.2 GB
EGAF00005727383	bam	1.1 GB
EGAF00005727384	bam	994.2 MB
EGAF00005727385	bam	488.7 MB
EGAF00005727386	bam	1.1 GB
EGAF00005727387	bam	4.6 GB
EGAF00005727388	bam	4.9 GB
EGAF00005727389	bam	856.4 MB
EGAF00005727390	bam	1.1 GB
EGAF00005727391	bam	1.0 GB
EGAF00005727392	bam	406.7 MB
EGAF00005727393	bam	2.2 GB
EGAF00005727394	bam	901.7 MB
EGAF00005727395	bam	394.4 MB
EGAF00005727396	bam	2.6 GB
EGAF00005727397	bam	2.2 GB
EGAF00005727398	bam	1.8 GB
EGAF00005727399	bam	447.0 MB
EGAF00005727400	bam	1.5 GB
EGAF00005727401	bam	1.0 GB
EGAF00005727402	bam	4.7 GB
EGAF00005727403	bam	2.4 GB
EGAF00005727404	bam	1.6 GB
EGAF00005727405	bam	986.0 MB
EGAF00005727406	bam	1.8 GB
EGAF00005727407	bam	389.7 MB
EGAF00005727408	bam	1.2 GB
EGAF00005727409	bam	779.7 MB
EGAF00005727410	bam	419.4 MB
EGAF00005727411	bam	1.8 GB
EGAF00005727412	bam	613.1 MB
EGAF00005727413	bam	4.5 GB
EGAF00005727414	bam	995.6 MB
EGAF00005727415	bam	1.7 GB
EGAF00005727416	bam	3.5 GB
EGAF00005727417	bam	2.0 GB
EGAF00005727418	bam	1.6 GB
EGAF00005727419	bam	888.6 MB
EGAF00005727420	bam	4.5 GB
EGAF00005727421	bam	995.6 MB
EGAF00005727422	bam	4.1 GB
EGAF00005727423	bam	2.3 GB
EGAF00005727424	bam	684.7 MB
EGAF00005727425	bam	1.7 GB
EGAF00005727426	bam	2.0 GB
EGAF00005727427	bam	1.4 GB
EGAF00005727428	bam	1.2 GB
EGAF00005727429	bam	1.3 GB
EGAF00005727430	bam	1.9 GB
EGAF00005727431	bam	3.3 GB
EGAF00005727432	bam	3.5 GB
EGAF00005727433	bam	491.3 MB
EGAF00005727434	bam	2.4 GB
EGAF00005727435	bam	1.1 GB
EGAF00005727436	bam	625.1 MB
EGAF00005727437	bam	1.5 GB
EGAF00005727438	bam	2.2 GB
EGAF00005727439	bam	1.6 GB
EGAF00005727440	bam	916.9 MB
EGAF00005727441	bam	2.0 GB
EGAF00005727442	bam	1.5 GB
EGAF00005727443	bam	1.3 GB
EGAF00005727444	bam	2.0 GB
EGAF00005727445	bam	3.1 GB
EGAF00005727446	bam	1.1 GB
EGAF00005727447	bam	3.5 GB
EGAF00005727448	bam	2.8 GB
EGAF00005727449	bam	667.1 MB
EGAF00005727450	bam	1.4 GB
EGAF00005727451	bam	1.7 GB
EGAF00005727452	bam	892.4 MB
EGAF00005727453	bam	1.6 GB
EGAF00005727454	bam	2.8 GB
EGAF00005727455	bam	1.3 GB
EGAF00005727456	bam	965.0 MB
EGAF00005727457	bam	937.0 MB
EGAF00005727458	bam	3.3 GB
EGAF00005727459	bam	895.6 MB
EGAF00005727460	bam	1.0 GB
EGAF00005727461	bam	1.1 GB
EGAF00005727462	bam	1.9 GB
EGAF00005727463	bam	476.5 MB
EGAF00005727464	bam	1.5 GB
EGAF00005727465	bam	1.5 GB
EGAF00005727466	bam	1.3 GB
EGAF00005727467	bam	2.9 GB
EGAF00005727468	bam	1.9 GB
EGAF00005727469	bam	1.4 GB
EGAF00005727470	bam	461.9 MB
EGAF00005727471	bam	2.6 GB
EGAF00005727472	bam	2.2 GB
EGAF00005727473	bam	1.8 GB
EGAF00005727474	bam	1.6 GB
EGAF00005727475	bam	1.7 GB
EGAF00005727476	bam	3.7 GB
EGAF00005727477	bam	1.7 GB
EGAF00005727478	bam	3.1 GB
EGAF00005727479	bam	2.3 GB
EGAF00005727480	bam	2.1 GB
EGAF00005727481	bam	1.2 GB
EGAF00005727482	bam	2.4 GB
EGAF00005727483	bam	2.8 GB
EGAF00005727484	bam	671.5 MB
EGAF00005727485	bam	2.5 GB
EGAF00005727486	bam	928.1 MB
EGAF00005727487	bam	2.2 GB
EGAF00005727488	bam	2.3 GB
EGAF00005727489	bam	1.5 GB
EGAF00005727490	bam	1.3 GB
EGAF00005727491	bam	1.3 GB
EGAF00005727492	bam	689.6 MB
EGAF00005727493	bam	581.3 MB
EGAF00005727494	bam	699.4 MB
EGAF00005727495	bam	1.7 GB
EGAF00005727496	bam	3.3 GB
EGAF00005727497	bam	1.7 GB
EGAF00005727498	bam	2.3 GB
EGAF00005727499	bam	1.9 GB
EGAF00005727500	bam	763.7 MB
EGAF00005727501	bam	697.8 MB
EGAF00005727502	bam	2.0 GB
EGAF00005727503	bam	3.7 GB
EGAF00005727504	bam	1.1 GB
EGAF00005727505	bam	2.0 GB
EGAF00005727506	bam	1.0 GB
EGAF00005727507	bam	555.6 MB
EGAF00005727508	bam	1.1 GB
EGAF00005727509	bam	692.2 MB
EGAF00005727510	bam	1.5 GB
EGAF00005727511	bam	1.1 GB
EGAF00005727512	bam	1.1 GB
EGAF00005727513	bam	295.4 MB
EGAF00005727514	bam	1.4 GB
EGAF00005727515	bam	2.2 GB
EGAF00005727516	bam	300.5 MB
EGAF00005727517	bam	9.4 GB
EGAF00005727518	bam	1.8 GB
EGAF00005727519	bam	397.3 MB
EGAF00005727520	bam	328.6 MB
EGAF00005727521	bam	2.4 GB
EGAF00005727522	bam	658.2 MB
EGAF00005727523	bam	581.4 MB
EGAF00005727524	bam	959.1 MB
EGAF00005727525	bam	842.1 MB
EGAF00005727526	bam	549.2 MB
EGAF00005727527	bam	2.3 GB
EGAF00005727528	bam	3.5 GB
EGAF00005727529	bam	2.0 GB
EGAF00005727530	bam	2.0 GB
EGAF00005727531	bam	2.6 GB
EGAF00005727532	bam	1.7 GB
EGAF00005727533	bam	2.5 GB
EGAF00005727534	bam	3.5 GB
EGAF00005727535	bam	806.0 MB
EGAF00005727536	bam	1.8 GB
EGAF00005727537	bam	3.3 GB
EGAF00005727538	bam	2.1 GB
EGAF00005727539	bam	1.4 GB
EGAF00005727540	bam	610.2 MB
EGAF00005727541	bam	699.8 MB
EGAF00005727542	bam	2.7 GB
EGAF00005727543	bam	1.2 GB
EGAF00005727544	bam	519.2 MB
EGAF00005727545	bam	1.2 GB
EGAF00005727546	bam	819.0 MB
EGAF00005727547	bam	2.0 GB
EGAF00005727548	bam	3.8 GB
EGAF00005727549	bam	626.3 MB
EGAF00005727550	bam	940.2 MB
EGAF00005727551	bam	2.6 GB
EGAF00005727552	bam	816.3 MB
EGAF00005727553	bam	595.5 MB
EGAF00005727554	bam	3.1 GB
EGAF00005727555	bam	2.1 GB
EGAF00005727556	bam	943.3 MB
EGAF00005727557	bam	1.1 GB
EGAF00005727558	bam	1.5 GB
EGAF00005727559	bam	5.2 GB
EGAF00005727560	bam	1.1 GB
EGAF00005727561	bam	695.9 MB
EGAF00005727562	bam	626.1 MB
EGAF00005727563	bam	2.4 GB
EGAF00005727564	bam	262.9 MB
EGAF00005727565	bam	1.7 GB
EGAF00005727566	bam	4.9 GB
EGAF00005727567	bam	1.2 GB
EGAF00005727568	bam	647.6 MB
EGAF00005727569	bam	1.3 GB
EGAF00005727570	bam	378.7 MB
EGAF00005727571	bam	2.3 GB
EGAF00005727572	bam	2.7 GB
EGAF00005727573	bam	340.0 MB
EGAF00005727574	bam	252.8 MB
EGAF00005727575	bam	1.7 GB
EGAF00005727576	bam	1.4 GB
EGAF00005727577	bam	267.8 MB
EGAF00005727578	fastq.gz	442.5 MB
EGAF00005727579	fastq.gz	323.4 MB
EGAF00005727580	fastq.gz	734.1 MB
EGAF00005727581	fastq.gz	406.5 MB
EGAF00005727582	fastq.gz	589.6 MB
EGAF00005727583	fastq.gz	490.9 MB
EGAF00005727584	fastq.gz	714.9 MB
EGAF00005727585	fastq.gz	597.0 MB
EGAF00005727586	fastq.gz	321.4 MB
EGAF00005727587	fastq.gz	337.6 MB
EGAF00005727588	fastq.gz	456.9 MB
EGAF00005727589	fastq.gz	257.0 MB
EGAF00005727590	fastq.gz	569.0 MB
EGAF00005727591	fastq.gz	555.5 MB
EGAF00005727592	fastq.gz	602.1 MB
EGAF00005727593	fastq.gz	277.1 MB
EGAF00005727594	fastq.gz	536.8 MB
EGAF00005727595	fastq.gz	530.9 MB
EGAF00005727596	fastq.gz	555.2 MB
EGAF00005727597	fastq.gz	226.5 MB
EGAF00005727598	fastq.gz	584.7 MB
EGAF00005727599	fastq.gz	648.7 MB
EGAF00005727600	fastq.gz	673.1 MB
EGAF00005727601	fastq.gz	438.9 MB
EGAF00005727602	fastq.gz	273.6 MB
EGAF00005727603	fastq.gz	399.9 MB
EGAF00005727604	fastq.gz	446.7 MB
EGAF00005727605	fastq.gz	505.2 MB
EGAF00005727606	fastq.gz	463.7 MB
EGAF00005727607	fastq.gz	579.9 MB
EGAF00005727608	fastq.gz	537.9 MB
EGAF00005727609	fastq.gz	509.1 MB
EGAF00005727610	fastq.gz	560.0 MB
EGAF00005727611	fastq.gz	371.8 MB
EGAF00005727612	fastq.gz	408.7 MB
EGAF00005727613	fastq.gz	665.5 MB
EGAF00005727614	fastq.gz	560.6 MB
EGAF00005727615	fastq.gz	216.5 MB
EGAF00005727616	fastq.gz	467.9 MB
EGAF00005727617	fastq.gz	489.7 MB
EGAF00005727618	fastq.gz	553.8 MB
EGAF00005727619	fastq.gz	309.1 MB
EGAF00005727620	fastq.gz	395.3 MB
EGAF00005727621	fastq.gz	591.5 MB
EGAF00005727622	fastq.gz	342.4 MB
EGAF00005727623	fastq.gz	433.5 MB
EGAF00005727624	fastq.gz	695.8 MB
EGAF00005727625	fastq.gz	434.3 MB
EGAF00005727626	fastq.gz	805.6 MB
EGAF00005727627	fastq.gz	348.8 MB
EGAF00005727628	fastq.gz	591.2 MB
EGAF00005727629	fastq.gz	503.9 MB
EGAF00005727630	fastq.gz	417.7 MB
EGAF00005727631	fastq.gz	613.7 MB
EGAF00005727632	fastq.gz	221.9 MB
EGAF00005727633	fastq.gz	690.2 MB
EGAF00005727634	fastq.gz	480.6 MB
EGAF00005727635	fastq.gz	764.9 MB
EGAF00005727636	fastq.gz	1.1 GB
EGAF00005727637	fastq.gz	312.4 MB
EGAF00005727638	fastq.gz	416.6 MB
EGAF00005727639	fastq.gz	375.2 MB
EGAF00005727640	fastq.gz	186.4 MB
EGAF00005727641	fastq.gz	513.7 MB
EGAF00005727642	fastq.gz	254.0 MB
EGAF00005727643	fastq.gz	454.6 MB
EGAF00005727644	fastq.gz	725.2 MB
EGAF00005727645	fastq.gz	736.5 MB
EGAF00005727646	fastq.gz	378.6 MB
EGAF00005727647	fastq.gz	417.6 MB
EGAF00005727648	fastq.gz	702.6 MB
EGAF00005727649	fastq.gz	286.5 MB
EGAF00005727650	fastq.gz	932.7 MB
EGAF00005727651	fastq.gz	1.3 GB
EGAF00005727652	fastq.gz	581.5 MB
EGAF00005727653	fastq.gz	523.8 MB
EGAF00005727654	fastq.gz	523.8 MB
EGAF00005727655	fastq.gz	500.9 MB
EGAF00005727656	fastq.gz	387.7 MB
EGAF00005727657	fastq.gz	239.2 MB
EGAF00005727658	fastq.gz	1.1 GB
EGAF00005727659	fastq.gz	474.9 MB
EGAF00005727660	fastq.gz	523.3 MB
EGAF00005727661	fastq.gz	420.1 MB
EGAF00005727662	fastq.gz	763.1 MB
EGAF00005727663	fastq.gz	308.8 MB
EGAF00005727664	fastq.gz	958.8 MB
EGAF00005727665	fastq.gz	1.2 GB
EGAF00005727666	fastq.gz	370.0 MB
EGAF00005727667	fastq.gz	401.5 MB
EGAF00005727668	fastq.gz	419.7 MB
EGAF00005727669	fastq.gz	440.6 MB
EGAF00005727670	fastq.gz	323.9 MB
EGAF00005727671	fastq.gz	459.8 MB
EGAF00005727672	fastq.gz	462.9 MB
EGAF00005727673	fastq.gz	520.7 MB
EGAF00005727674	fastq.gz	235.0 MB
EGAF00005727675	fastq.gz	418.0 MB
EGAF00005727676	fastq.gz	470.7 MB
EGAF00005727677	fastq.gz	451.2 MB
EGAF00005727678	fastq.gz	180.0 MB
EGAF00005727679	fastq.gz	407.0 MB
EGAF00005727680	fastq.gz	844.8 MB
EGAF00005727681	fastq.gz	192.3 MB
EGAF00005727682	fastq.gz	269.4 MB
EGAF00005727683	fastq.gz	220.2 MB
EGAF00005727684	fastq.gz	368.3 MB
EGAF00005727685	fastq.gz	543.6 MB
EGAF00005727686	fastq.gz	592.7 MB
EGAF00005727687	fastq.gz	642.6 MB
EGAF00005727688	fastq.gz	739.0 MB
EGAF00005727689	fastq.gz	288.9 MB
EGAF00005727690	fastq.gz	420.9 MB
EGAF00005727691	fastq.gz	284.2 MB
EGAF00005727692	fastq.gz	374.4 MB
EGAF00005727693	fastq.gz	592.1 MB
EGAF00005727694	fastq.gz	216.6 MB
EGAF00005727695	fastq.gz	674.8 MB
EGAF00005727696	fastq.gz	643.6 MB
EGAF00005727697	fastq.gz	550.9 MB
EGAF00005727698	fastq.gz	249.5 MB
EGAF00005727699	fastq.gz	343.8 MB
EGAF00005727700	fastq.gz	223.5 MB
EGAF00005727701	fastq.gz	200.4 MB
EGAF00005727702	fastq.gz	226.7 MB
EGAF00005727703	fastq.gz	214.5 MB
EGAF00005727704	fastq.gz	230.8 MB
EGAF00005727705	fastq.gz	566.8 MB
EGAF00005727706	fastq.gz	248.0 MB
EGAF00005727707	fastq.gz	171.1 MB
EGAF00005727708	fastq.gz	215.4 MB
EGAF00005727709	fastq.gz	1.5 GB
EGAF00005727710	fastq.gz	314.2 MB
EGAF00005727711	fastq.gz	341.8 MB
EGAF00005727712	fastq.gz	310.5 MB
EGAF00005727713	fastq.gz	400.4 MB
EGAF00005727714	fastq.gz	352.2 MB
EGAF00005727715	fastq.gz	348.8 MB
EGAF00005727716	fastq.gz	890.4 MB
EGAF00005727717	fastq.gz	170.2 MB
EGAF00005727718	fastq.gz	135.2 MB
EGAF00005727719	fastq.gz	174.1 MB
EGAF00005727720	fastq.gz	451.9 MB
EGAF00005727721	fastq.gz	394.7 MB
EGAF00005727722	fastq.gz	446.5 MB
EGAF00005727723	fastq.gz	367.1 MB
EGAF00005727724	fastq.gz	459.8 MB
EGAF00005727725	fastq.gz	648.1 MB
EGAF00005727726	fastq.gz	482.5 MB
EGAF00005727727	fastq.gz	472.7 MB
EGAF00005727728	fastq.gz	524.1 MB
EGAF00005727729	fastq.gz	306.2 MB
EGAF00005727730	fastq.gz	456.0 MB
EGAF00005727731	fastq.gz	426.8 MB
EGAF00005727732	fastq.gz	334.4 MB
EGAF00005727733	fastq.gz	494.9 MB
EGAF00005727734	fastq.gz	416.4 MB
EGAF00005727735	fastq.gz	727.2 MB
EGAF00005727736	fastq.gz	111.2 MB
EGAF00005727737	fastq.gz	703.2 MB
EGAF00005727738	fastq.gz	590.9 MB
EGAF00005727739	fastq.gz	425.6 MB
EGAF00005727740	fastq.gz	329.9 MB
EGAF00005727741	fastq.gz	526.7 MB
EGAF00005727742	fastq.gz	812.8 MB
EGAF00005727743	fastq.gz	488.9 MB
EGAF00005727744	fastq.gz	834.0 MB
EGAF00005727745	fastq.gz	145.8 MB
EGAF00005727746	fastq.gz	236.2 MB
EGAF00005727747	fastq.gz	642.3 MB
EGAF00005727748	fastq.gz	834.8 MB
EGAF00005727749	fastq.gz	491.7 MB
EGAF00005727750	fastq.gz	535.4 MB
EGAF00005727751	fastq.gz	539.0 MB
EGAF00005727752	fastq.gz	599.1 MB
EGAF00005727753	fastq.gz	277.7 MB
EGAF00005727754	fastq.gz	572.5 MB
EGAF00005727755	fastq.gz	402.6 MB
EGAF00005727756	fastq.gz	229.0 MB
EGAF00005727757	fastq.gz	867.3 MB
EGAF00005727758	fastq.gz	692.0 MB
EGAF00005727759	fastq.gz	668.5 MB
EGAF00005727760	fastq.gz	1.4 GB
EGAF00005727761	fastq.gz	155.8 MB
EGAF00005727762	fastq.gz	739.7 MB
EGAF00005727763	fastq.gz	237.0 MB
EGAF00005727764	fastq.gz	274.4 MB
EGAF00005727765	fastq.gz	264.3 MB
EGAF00005727766	fastq.gz	223.1 MB
EGAF00005727767	fastq.gz	409.6 MB
EGAF00005727768	fastq.gz	389.0 MB
EGAF00005727769	fastq.gz	299.2 MB
EGAF00005727770	fastq.gz	438.7 MB
EGAF00005727771	fastq.gz	436.1 MB
EGAF00005727772	fastq.gz	303.3 MB
EGAF00005727773	fastq.gz	188.6 MB
EGAF00005727774	fastq.gz	837.4 MB
EGAF00005727775	fastq.gz	402.3 MB
EGAF00005727776	fastq.gz	464.3 MB
EGAF00005727777	fastq.gz	496.5 MB
EGAF00005727778	fastq.gz	507.4 MB
EGAF00005727779	fastq.gz	824.8 MB
EGAF00005727780	fastq.gz	549.5 MB
EGAF00005727781	fastq.gz	434.8 MB
EGAF00005727782	fastq.gz	313.8 MB
EGAF00005727783	fastq.gz	255.1 MB
EGAF00005727784	fastq.gz	460.1 MB
EGAF00005727785	fastq.gz	640.0 MB
EGAF00005727786	fastq.gz	1.7 GB
EGAF00005727787	fastq.gz	311.1 MB
EGAF00005727788	fastq.gz	343.7 MB
EGAF00005727789	fastq.gz	525.9 MB
EGAF00005727790	fastq.gz	124.6 MB
EGAF00005727791	fastq.gz	525.0 MB
EGAF00005727792	fastq.gz	620.7 MB
EGAF00005727793	fastq.gz	110.1 MB
EGAF00005727794	fastq.gz	675.3 MB
EGAF00005727795	fastq.gz	562.8 MB
EGAF00005727796	fastq.gz	657.3 MB
EGAF00005727797	fastq.gz	178.3 MB
440 Files (470.6 GB)