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Whole transcriptome profiling of osteosarcoma

This dataset contains 86 osteosarcoma samples and their matched normals that underwent RNA sequencing using size fractionation, NuGEN Ovation Ultralow Library System V2 preparation, and paired-end sequencing on Illumina HiSeq 2000.

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MDACC GM Data Access Agreement (00025401)

DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”), effective as of the ____ day of _________________, 20__ (“Effective Date”), is by and between The University of Texas M. D. Anderson Cancer Center, an institution of The University of Texas System and an agency of the State of Texas, with an address at 1515 Holcombe Boulevard, Houston, Texas 77030 (“Provider”), and ________________________________ (“Recipient”) on behalf of its investigator _______ (“Recipient Investigator”) (collectively, the “Parties”; each, a “Party”). RECITALS Provider maintains the following de-identified data in the European Genome-phenome Archive (EGA) managed by the European Bioinformatics Institute ________________ (“Data”), and Provider is willing to allow Recipient to access such Data from the EGA for the internal noncommercial research purposes of _______________ (“Purpose”), pursuant to the terms of this Agreement. In consideration of the mutual promises and covenants herein, and for other good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the Parties agree as follows: 1. The Data will be used solely for the Research by Recipient Investigator at Recipient, and may not be transferred to any other investigator or to any third party without prior written permission from Provider. The Material may not be used for any purpose other than the Research, including without limitation for any commercial purpose or for research in human subjects (including, without limitation, in diagnostic testing). 2. Neither Recipient nor Recipient Investigator shall disclose Data to any person or party other than the Recipient Investigator hereunder without Provider’s prior written consent. 3. The Data will be used in compliance with all applicable laws, regulations, and guidelines applicable to the Data, including without limitation any applicable export controls. 4. In any publication resulting from use of the Data, Recipient and Recipient Investigator shall acknowledge Department of Genomic Medicine (“Provider Investigator”) and Provider as the provider of the Data. 5. This Agreement shall be effective as of the Effective Date and shall remain effective until completion of the Research. Either Party may terminate this Agreement with or without cause upon thirty (30) days’ written notice to the other Party. Upon expiration or termination of this Agreement for any reason, Recipient shall destroy all Data received pursuant to this Agreement. 6. Any notice permitted or required as provided for herein shall be in writing and to the contact and address as noted below or as may be provided by either party to the other in writing from time to time. Notice to Provider shall be to: Chief Legal Officer The University of Texas M. D. Anderson Cancer Center 7007 Bertner Ave., 1MC11.3433, Suite 1674 Houston, Texas 77030 Phone: 713-745-6633; Facsimile: 713-745-6029 With a copy to: The University of Texas M. D. Anderson Cancer Center 1515 Holcombe Blvd., FCT 8.5025 Office of Research Administration Attn: Executive Director, Research Administration Houston, TX 77030 Phone: 713-792-3672; Facsimile: 713-792-7455 Notice to Recipient shall be to: [insert] 7. In the event Protected Health Information (“PHI”), as defined by the federal Health Insurance Portability and Accountability Act of 1996 (“HIPAA”), as amended, is inadvertently created, accessed by, and/or disclosed to Recipient in connection with this Agreement, Recipient will immediately notify the Provider and will return to Provider or destroy such PHI, in accordance with the Provider’s instructions. Pending return or destruction of any PHI, Recipient shall maintain the confidentiality of all Data (including the PHI) and use appropriate safeguards to prevent access to, use, or disclosure of Data (including the PHI). 8. PROVIDER MAKES NO REPRESENTATION OR WARRANTY CONCERNING THE MATERIAL, INCLUDING WITHOUT LIMITATION, WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. 9. Recipient Investigator and Recipient accept all liability for any use of the Data and for any loss, claim, or damage which may arise from or in connection with this Agreement or the use, handling or storage of the Data and in no event shall Provider or Provider Investigator be liable for any such use, loss, claim or damage.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003247 Other
EGAS00001004197 Other
ID File Type Size Located in
EGAF00003474596 bam 10.5 GB
EGAF00003474599 bam 10.4 GB
EGAF00003474600 bam 6.6 GB
EGAF00003474601 bam 8.0 GB
EGAF00003474602 bam 17.8 GB
EGAF00003474603 bam 19.6 GB
EGAF00003474604 bam 15.0 GB
EGAF00003474605 bam 15.5 GB
EGAF00003474606 bam 18.2 GB
EGAF00003474607 bam 14.2 GB
EGAF00003474608 bam 15.4 GB
EGAF00003474609 bam 20.1 GB
EGAF00003474610 bam 16.5 GB
EGAF00003474611 bam 10.3 GB
EGAF00003474612 bam 15.5 GB
EGAF00003474613 bam 14.6 GB
EGAF00003474614 bam 11.9 GB
EGAF00003474615 bam 17.3 GB
EGAF00003474616 bam 12.2 GB
EGAF00003474617 bam 14.8 GB
EGAF00003474618 bam 20.2 GB
EGAF00003474619 bam 16.9 GB
EGAF00003474620 bam 14.9 GB
EGAF00003474621 bam 16.6 GB
EGAF00003474622 bam 13.1 GB
EGAF00003474623 bam 14.7 GB
EGAF00003474625 bam 14.1 GB
EGAF00003474626 bam 13.1 GB
EGAF00003474627 bam 13.6 GB
EGAF00003474628 bam 11.1 GB
EGAF00003474629 bam 12.3 GB
EGAF00003474630 bam 14.1 GB
EGAF00003474631 bam 9.3 GB
EGAF00003474632 bam 14.2 GB
EGAF00003474633 bam 4.8 GB
EGAF00003474634 bam 12.0 GB
EGAF00003474635 bam 38.1 GB
EGAF00003474636 bam 8.5 GB
EGAF00003474637 bam 15.6 GB
EGAF00003474642 bam 14.4 GB
EGAF00003474643 bam 17.5 GB
EGAF00003474645 bam 12.7 GB
EGAF00003474646 bam 12.4 GB
EGAF00003474647 bam 13.5 GB
EGAF00003474648 bam 16.7 GB
EGAF00003474649 bam 15.9 GB
EGAF00003474650 bam 11.2 GB
EGAF00003474651 bam 14.0 GB
EGAF00003474652 bam 15.3 GB
EGAF00003474653 bam 19.4 GB
EGAF00003474654 bam 18.4 GB
EGAF00003474655 bam 12.0 GB
EGAF00003474656 bam 11.0 GB
EGAF00003474657 bam 9.4 GB
EGAF00003474658 bam 12.3 GB
EGAF00003474659 bam 16.4 GB
EGAF00003474660 bam 15.9 GB
EGAF00003474661 bam 9.5 GB
EGAF00003474662 bam 10.0 GB
EGAF00003474663 bam 15.4 GB
EGAF00003474665 bam 17.3 GB
EGAF00003474667 bam 15.0 GB
EGAF00003474680 bam 17.4 GB
EGAF00003474681 bam 17.2 GB
EGAF00003474682 bam 14.8 GB
EGAF00003474683 bam 9.3 GB
EGAF00003474684 bam 7.2 GB
EGAF00003474685 bam 23.3 GB
EGAF00003474686 bam 6.1 GB
EGAF00003474687 bam 16.3 GB
EGAF00003474688 bam 15.2 GB
EGAF00003474689 bam 20.4 GB
EGAF00003474690 bam 15.7 GB
EGAF00003474691 bam 15.2 GB
EGAF00003474692 bam 15.6 GB
EGAF00003474693 bam 17.0 GB
EGAF00003474694 bam 15.0 GB
EGAF00003474695 bam 17.6 GB
EGAF00003474696 bam 12.8 GB
EGAF00003474697 bam 17.4 GB
EGAF00003474698 bam 12.7 GB
EGAF00003474700 bam 9.7 GB
EGAF00003474701 bam 10.5 GB
EGAF00003474702 bam 11.7 GB
EGAF00005743520 bam 15.5 GB
EGAF00005743521 bam 13.2 GB
86 Files (1.2 TB)