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T-cell reconstitution after reduced dose ATLG induction in kidney transplant patients

We analyzed the T-cell receptor (TCR) repertoires from ten kidney transplant recipients. Five out of the ten kidney transplant recipients received ATLG while the other five recipients received basiliximab as induction therapy. TCR repertoires of CD4+ and CD8+ positive T-cells were assessed prior to transplantation and within the first month after transplantation as well as at three- and 12-months post-transplant. In addition, the pre-formed alloreactive TCR repertoire for each kidney transplant recipient was identified using mixed lymphocyte reaction and donor reactive T-cells were subjected to TCR beta sequencing. This dataset comprises a total of 106 samples. NGS TCR beta libraries of all samples were sequenced on an Illumina NextSeq 500 and raw sequencing data (in the form of fastq files) as well assembled clonotypes and their counts (in the form of clonotype tables) are provided.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005299 Other
EGAS00001005941 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005298863 fastq.gz 360.8 MB
EGAF00005298864 fastq.gz 531.5 MB
EGAF00005298865 fastq.gz 482.1 MB
EGAF00005298866 fastq.gz 683.5 MB
EGAF00005298871 fastq.gz 583.3 MB
EGAF00005298872 fastq.gz 814.4 MB
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EGAF00005298876 fastq.gz 1.5 GB
EGAF00005298881 fastq.gz 342.6 MB
EGAF00005298882 fastq.gz 511.1 MB
EGAF00005298885 fastq.gz 429.8 MB
EGAF00005298886 fastq.gz 636.7 MB
EGAF00005298893 fastq.gz 256.1 MB
EGAF00005298894 fastq.gz 360.4 MB
EGAF00005298897 fastq.gz 228.1 MB
EGAF00005298898 fastq.gz 366.5 MB
EGAF00005298899 fastq.gz 242.9 MB
EGAF00005298900 fastq.gz 376.0 MB
EGAF00005298911 fastq.gz 418.6 MB
EGAF00005298912 fastq.gz 641.0 MB
EGAF00005298915 fastq.gz 326.1 MB
EGAF00005298916 fastq.gz 482.5 MB
EGAF00005298931 fastq.gz 425.7 MB
EGAF00005298932 fastq.gz 678.3 MB
EGAF00005298933 fastq.gz 350.0 MB
EGAF00005298934 fastq.gz 526.7 MB
EGAF00005298935 fastq.gz 379.9 MB
EGAF00005298936 fastq.gz 604.5 MB
EGAF00005298937 fastq.gz 261.9 MB
EGAF00005298938 fastq.gz 405.5 MB
EGAF00005298939 fastq.gz 402.8 MB
EGAF00005298940 fastq.gz 565.0 MB
EGAF00005298941 fastq.gz 408.9 MB
EGAF00005298942 fastq.gz 607.4 MB
EGAF00005298987 fastq.gz 416.4 MB
EGAF00005298988 fastq.gz 635.4 MB
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EGAF00005298994 fastq.gz 362.0 MB
EGAF00005298995 fastq.gz 364.2 MB
EGAF00005298996 fastq.gz 534.5 MB
EGAF00005299021 fastq.gz 271.3 MB
EGAF00005299022 fastq.gz 422.7 MB
EGAF00005299047 fastq.gz 338.1 MB
EGAF00005299048 fastq.gz 530.8 MB
EGAF00005299056 txt 436.2 kB
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EGAF00005299059 txt 2.9 MB
EGAF00005299060 txt 7.0 MB
EGAF00005299062 txt 4.7 MB
EGAF00005299073 txt 7.1 MB
EGAF00005299074 txt 3.4 MB
EGAF00005299076 txt 9.7 MB
EGAF00005299084 txt 10.1 MB
EGAF00005299085 txt 4.3 MB
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EGAF00005299087 txt 1.0 MB
EGAF00005299088 txt 1.3 MB
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EGAF00005299101 txt 12.5 MB
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EGAF00005299121 txt 884.9 kB
EGAF00005299122 txt 1.1 MB
EGAF00005299124 txt 885.1 kB
EGAF00005299126 txt 243.2 kB
EGAF00005299128 txt 250.1 kB
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EGAF00005774624 fastq.gz 231.6 MB
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EGAF00005774627 fastq.gz 195.6 MB
EGAF00005774628 fastq.gz 251.2 MB
EGAF00005774629 fastq.gz 202.4 MB
EGAF00005774630 fastq.gz 248.4 MB
EGAF00005774631 fastq.gz 170.8 MB
EGAF00005774632 fastq.gz 232.1 MB
EGAF00005774633 fastq.gz 205.7 MB
EGAF00005774634 fastq.gz 287.8 MB
EGAF00005774635 fastq.gz 219.9 MB
EGAF00005774636 fastq.gz 288.8 MB
EGAF00005774637 fastq.gz 239.3 MB
EGAF00005774638 fastq.gz 289.2 MB
EGAF00005774639 fastq.gz 176.9 MB
EGAF00005774640 fastq.gz 218.3 MB
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EGAF00005774642 fastq.gz 335.2 MB
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EGAF00005774644 fastq.gz 470.5 MB
EGAF00005774645 fastq.gz 164.2 MB
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EGAF00005774655 fastq.gz 215.4 MB
EGAF00005774656 fastq.gz 265.6 MB
EGAF00005774657 fastq.gz 323.5 MB
EGAF00005774658 fastq.gz 390.6 MB
EGAF00005774659 fastq.gz 354.2 MB
EGAF00005774660 fastq.gz 436.0 MB
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EGAF00005774662 fastq.gz 42.3 MB
EGAF00005774663 fastq.gz 107.8 MB
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EGAF00005774665 fastq.gz 321.1 MB
EGAF00005774666 fastq.gz 368.3 MB
EGAF00005774667 fastq.gz 34.6 MB
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EGAF00005774669 fastq.gz 34.1 MB
EGAF00005774670 fastq.gz 41.3 MB
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EGAF00005774673 fastq.gz 184.3 MB
EGAF00005774674 fastq.gz 242.2 MB
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EGAF00005774677 fastq.gz 569.9 MB
EGAF00005774678 fastq.gz 685.3 MB
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EGAF00005774680 fastq.gz 353.0 MB
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EGAF00005774689 fastq.gz 1.1 GB
EGAF00005774690 fastq.gz 1.3 GB
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EGAF00005774693 fastq.gz 93.6 MB
EGAF00005774694 fastq.gz 120.4 MB
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EGAF00005774696 fastq.gz 389.6 MB
EGAF00005774697 fastq.gz 183.0 MB
EGAF00005774698 fastq.gz 229.7 MB
EGAF00005774699 fastq.gz 344.3 MB
EGAF00005774700 fastq.gz 418.2 MB
EGAF00005774701 fastq.gz 378.3 MB
EGAF00005774702 fastq.gz 485.5 MB
EGAF00005774703 fastq.gz 359.8 MB
EGAF00005774704 fastq.gz 451.5 MB
EGAF00005774705 fastq.gz 168.7 MB
EGAF00005774706 fastq.gz 213.8 MB
EGAF00005774707 fastq.gz 317.3 MB
EGAF00005774708 fastq.gz 368.5 MB
EGAF00005774709 fastq.gz 299.5 MB
EGAF00005774710 fastq.gz 384.7 MB
EGAF00005774711 fastq.gz 211.0 MB
EGAF00005774712 fastq.gz 263.1 MB
EGAF00005774713 fastq.gz 135.6 MB
EGAF00005774714 fastq.gz 160.1 MB
EGAF00005774715 fastq.gz 4.2 MB
EGAF00005774716 fastq.gz 4.8 MB
EGAF00005774717 fastq.gz 474.4 MB
EGAF00005774718 fastq.gz 602.5 MB
EGAF00005774719 fastq.gz 159.2 MB
EGAF00005774720 fastq.gz 192.9 MB
EGAF00005774721 fastq.gz 1.3 GB
EGAF00005774722 fastq.gz 1.7 GB
EGAF00005774723 fastq.gz 258.3 MB
EGAF00005774724 fastq.gz 316.1 MB
EGAF00005774725 fastq.gz 50.2 MB
EGAF00005774726 fastq.gz 67.5 MB
EGAF00005774727 fastq.gz 239.7 MB
EGAF00005774728 fastq.gz 301.7 MB
EGAF00005774729 fastq.gz 214.9 MB
EGAF00005774730 fastq.gz 267.4 MB
EGAF00005774731 fastq.gz 73.4 MB
EGAF00005774732 fastq.gz 96.6 MB
EGAF00005774733 fastq.gz 248.9 MB
EGAF00005774734 fastq.gz 314.2 MB
EGAF00005774735 fastq.gz 53.2 MB
EGAF00005774736 fastq.gz 64.1 MB
EGAF00005774737 fastq.gz 57.3 MB
EGAF00005774738 fastq.gz 71.3 MB
EGAF00005774739 fastq.gz 129.2 MB
EGAF00005774740 fastq.gz 153.0 MB
EGAF00005774741 fastq.gz 199.8 MB
EGAF00005774742 fastq.gz 260.7 MB
EGAF00005774743 fastq.gz 130.2 MB
EGAF00005774744 fastq.gz 156.7 MB
EGAF00005774745 fastq.gz 147.9 MB
EGAF00005774746 fastq.gz 188.0 MB
EGAF00005774747 fastq.gz 30.1 MB
EGAF00005774748 fastq.gz 34.1 MB
EGAF00005774749 fastq.gz 4.0 MB
EGAF00005774750 fastq.gz 4.5 MB
EGAF00005774751 fastq.gz 205.7 MB
EGAF00005774752 fastq.gz 262.1 MB
EGAF00005774753 fastq.gz 95.1 MB
EGAF00005774754 fastq.gz 114.1 MB
EGAF00005774755 fastq.gz 194.5 MB
EGAF00005774756 fastq.gz 254.6 MB
EGAF00005774757 fastq.gz 185.2 MB
EGAF00005774758 fastq.gz 227.5 MB
EGAF00005774759 fastq.gz 245.8 MB
EGAF00005774760 fastq.gz 296.7 MB
EGAF00005774761 fastq.gz 204.6 MB
EGAF00005774762 fastq.gz 264.3 MB
EGAF00005774763 fastq.gz 255.8 MB
EGAF00005774764 fastq.gz 325.4 MB
EGAF00005774765 fastq.gz 18.4 MB
EGAF00005774766 fastq.gz 22.4 MB
EGAF00005774767 fastq.gz 39.0 MB
EGAF00005774768 fastq.gz 44.5 MB
EGAF00005774769 fastq.gz 321.1 MB
EGAF00005774770 fastq.gz 392.7 MB
EGAF00005774771 fastq.gz 242.7 MB
EGAF00005774772 fastq.gz 314.7 MB
EGAF00005774773 fastq.gz 70.9 MB
EGAF00005774774 fastq.gz 85.0 MB
EGAF00005774775 fastq.gz 56.2 MB
EGAF00005774776 fastq.gz 71.2 MB
EGAF00005774777 fastq.gz 35.9 MB
EGAF00005774778 fastq.gz 46.9 MB
EGAF00005774779 fastq.gz 184.8 MB
EGAF00005774780 fastq.gz 219.9 MB
EGAF00005774781 fastq.gz 642.2 MB
EGAF00005774782 fastq.gz 802.3 MB
EGAF00005774783 fastq.gz 390.0 MB
EGAF00005774784 fastq.gz 501.0 MB
EGAF00005774785 txt 9.7 MB
EGAF00005774786 txt 10.4 MB
EGAF00005774787 txt 5.8 MB
EGAF00005774788 txt 24.7 MB
EGAF00005774789 txt 180.0 kB
EGAF00005774790 txt 2.2 MB
EGAF00005774791 txt 5.4 MB
EGAF00005774792 txt 1.2 MB
EGAF00005774793 txt 3.8 MB
EGAF00005774794 txt 9.5 kB
EGAF00005774795 txt 8.2 MB
EGAF00005774796 txt 16.1 MB
EGAF00005774797 txt 7.8 MB
EGAF00005774798 txt 3.2 MB
EGAF00005774799 txt 9.5 MB
EGAF00005774800 txt 4.5 MB
EGAF00005774801 txt 8.0 MB
EGAF00005774802 txt 6.7 MB
EGAF00005774803 txt 5.2 MB
EGAF00005774804 txt 12.5 MB
EGAF00005774805 txt 644.5 kB
EGAF00005774806 txt 1.8 MB
EGAF00005774807 txt 3.1 MB
EGAF00005774808 txt 1.4 MB
EGAF00005774809 txt 4.7 MB
EGAF00005774810 txt 215.3 kB
EGAF00005774811 txt 5.0 MB
EGAF00005774812 txt 7.6 MB
EGAF00005774813 txt 8.0 MB
EGAF00005774814 txt 5.5 MB
EGAF00005774815 txt 577.1 kB
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EGAF00005774819 txt 1.5 MB
EGAF00005774820 txt 373.1 kB
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EGAF00005774822 txt 4.7 MB
EGAF00005774823 txt 8.9 MB
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EGAF00005774839 txt 3.5 MB
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EGAF00005774847 txt 3.1 MB
EGAF00005774848 txt 3.3 MB
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EGAF00005774864 txt 1.8 MB
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318 Files (63.8 GB)