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Single cell RNA-seq and ATAC-seq of human fetal forebrain tissue, weeks 8 to 11.

Single cell RNA-seq from 6 and single nuclei ATAC-seq from 3 human fetal tissue samples. Samples from 8 to 11 weeks. Includes a 8.5 weeks samples with matching both ATAC-seq and RNA-seq runs. Data was sequenced using 10X Genomics chromium technology, for scRNA-seq samples belong to v2 and v3.

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Single cell RNA and ATAC sequencing of human fetal forebrain from 8 to 11 weeks.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom XXXXX grants access to the Data. Data: The managed access datasets to which the User Institution has requested access. Data Producers: XXXXX and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. XXXXX: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any). 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify XXXXX within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify XXXXX prior to any significant changes to the protocol for the Project. 14. The User Institution will notify XXXXX as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. XXXXX may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than XXXXX. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003412 Other
EGAS00001005911 Other
EGAS00001006136 Other
  • they were no changes made in this dataset
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002293512 bam 3.3 GB
EGAF00002293513 bam 1.1 GB
EGAF00002293514 bam 1.0 GB
EGAF00002293515 bam 1.0 GB
EGAF00002293516 bam 6.7 GB
EGAF00002293517 bam 3.5 GB
EGAF00002293518 bam 4.1 GB
EGAF00002293519 bam 8.1 GB
EGAF00002293520 bam 13.5 GB
EGAF00002293521 bam 10.7 GB
EGAF00002293522 bam 11.0 GB
EGAF00002293523 bam 3.6 GB
EGAF00002293524 bam 4.1 GB
EGAF00002293525 bam 3.6 GB
EGAF00002293526 bam 4.1 GB
EGAF00002293527 bam 3.4 GB
EGAF00002293528 bam 7.5 GB
EGAF00002293529 bam 7.7 GB
EGAF00002293530 bam 7.7 GB
EGAF00002293531 bam 2.9 GB
EGAF00005761642 bam 30.4 GB
EGAF00005761643 bam 24.5 GB
EGAF00005761644 bam 43.3 GB
EGAF00005761645 bam 42.6 GB
EGAF00005761646 fastq.gz 10.4 GB
EGAF00005761647 fastq.gz 23.7 GB
EGAF00005761648 fastq.gz 3.1 GB
EGAF00005761649 fastq.gz 3.3 GB
EGAF00005761650 fastq.gz 8.5 GB
EGAF00005761651 fastq.gz 18.8 GB
EGAF00005761652 fastq.gz 2.4 GB
EGAF00005761653 fastq.gz 2.5 GB
EGAF00005761654 fastq.gz 7.6 GB
EGAF00005761655 fastq.gz 3.9 GB
EGAF00005761656 fastq.gz 7.5 GB
EGAF00005761657 fastq.gz 3.8 GB
EGAF00005761658 fastq.gz 7.5 GB
EGAF00005761659 fastq.gz 4.0 GB
EGAF00005761660 fastq.gz 1.5 GB
EGAF00005761661 fastq.gz 7.4 GB
EGAF00005761662 fastq.gz 1.5 GB
EGAF00005761663 fastq.gz 7.3 GB
EGAF00005761664 fastq.gz 1.6 GB
EGAF00005761665 fastq.gz 7.7 GB
EGAF00005761666 fastq.gz 7.5 GB
EGAF00005761667 fastq.gz 4.0 GB
EGAF00005761668 fastq.gz 1.6 GB
EGAF00005761669 fastq.gz 7.6 GB
EGAF00005761670 bai 8.6 MB
EGAF00005761671 bai 21.7 MB
EGAF00005761672 bai 8.7 MB
EGAF00005761673 bai 20.0 MB
EGAF00006130792 fastq.gz 4.1 GB
EGAF00006130793 fastq.gz 2.1 GB
EGAF00006130794 fastq.gz 13.3 GB
EGAF00006130795 fastq.gz 6.8 GB
EGAF00006130796 fastq.gz 2.7 GB
EGAF00006130797 fastq.gz 13.2 GB
EGAF00006130798 fastq.gz 4.4 GB
EGAF00006130799 fastq.gz 2.4 GB
EGAF00006130800 fastq.gz 13.2 GB
EGAF00006130801 fastq.gz 2.5 GB
EGAF00006130802 fastq.gz 5.7 GB
EGAF00006130803 fastq.gz 13.1 GB
EGAF00006130804 fastq.gz 852.3 MB
EGAF00006130805 fastq.gz 1.1 GB
EGAF00006130806 fastq.gz 934.1 MB
EGAF00006130807 fastq.gz 1.2 GB
EGAF00006130808 fastq.gz 3.5 GB
EGAF00006130809 fastq.gz 10.2 GB
EGAF00006130810 fastq.gz 879.9 MB
EGAF00006130811 fastq.gz 4.0 GB
EGAF00006130812 fastq.gz 6.8 GB
EGAF00006130813 fastq.gz 15.8 GB
EGAF00006130814 fastq.gz 2.5 GB
EGAF00006130815 fastq.gz 7.4 GB
EGAF00006130816 fastq.gz 2.3 GB
EGAF00006130817 fastq.gz 2.3 GB
EGAF00006130818 fastq.gz 960.3 MB
EGAF00006130819 fastq.gz 4.3 GB
EGAF00006130820 fastq.gz 2.7 GB
EGAF00006130821 fastq.gz 4.3 GB
EGAF00006130822 fastq.gz 3.4 GB
EGAF00006130823 fastq.gz 10.9 GB
EGAF00006130824 fastq.gz 1.2 GB
EGAF00006130825 fastq.gz 1.2 GB
EGAF00006130826 fastq.gz 998.2 MB
EGAF00006130827 fastq.gz 4.5 GB
EGAF00006130828 fastq.gz 6.9 GB
EGAF00006130829 fastq.gz 16.2 GB
EGAF00006130830 fastq.gz 3.4 GB
EGAF00006130831 fastq.gz 10.9 GB
EGAF00006130832 fastq.gz 3.3 GB
EGAF00006130833 fastq.gz 9.7 GB
EGAF00006130834 fastq.gz 6.8 GB
EGAF00006130835 fastq.gz 15.8 GB
EGAF00006130836 fastq.gz 6.9 GB
EGAF00006130837 fastq.gz 16.2 GB
EGAF00006130838 fastq.gz 2.2 GB
EGAF00006130839 fastq.gz 2.2 GB
EGAF00006130840 fastq.gz 5.7 GB
EGAF00006130841 fastq.gz 13.1 GB
EGAF00006130842 fastq.gz 877.5 MB
EGAF00006130843 fastq.gz 4.1 GB
EGAF00006130844 fastq.gz 4.2 GB
EGAF00006130845 fastq.gz 2.3 GB
EGAF00006130846 fastq.gz 2.8 GB
EGAF00006130847 fastq.gz 8.1 GB
EGAF00006130848 fastq.gz 4.1 GB
EGAF00006130849 fastq.gz 2.2 GB
EGAF00006130850 fastq.gz 1.8 GB
EGAF00006130851 fastq.gz 1.8 GB
112 Files (733.1 GB)