WGS of exposed organoids
The mutagenicity of bacteria was assessed by serially exposing human small intestinal organoids to various bacterial species or isolated toxins. We have used the following abbreviations: EWT: Organoids exposed to E. coli described in PMID: 32106218 EKO: Organoids exposed to isogenic E. coli as EWT, with knockout of the deltaClbQ gene, rendering them unable to produce colibactin DYE: Organoids exposed to FastGreen injection control dye NIS: Organoids exposed to E. coli Nissle ETBF: Organoids exposed to the protease toxin BTF produced by ETBF-bacteria.
- 28/03/2022
- 15 samples
- DAC: EGAC00001001864
- Technology: Illumina NovaSeq 6000
Data Access Agreement Princess Máxima Center for pediatric oncology
The Princess Maxima Center for pediatric oncology default access policy to enable re-production of research and re-use of data for scientific purposes. Please contact the DAC (EGAC00001001864) for the most up to date policies.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003934 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00002799058 | bam | 47.1 GB | Report |
|
| EGAF00002799059 | bam | 52.4 GB | Report |
|
| EGAF00002799060 | bam | 46.9 GB | Report |
|
| EGAF00002799061 | bam | 40.5 GB | Report |
|
| EGAF00002799062 | bam | 71.7 GB | Report |
|
| EGAF00002799063 | bam | 42.3 GB | Report |
|
| EGAF00002799064 | bam | 40.6 GB | Report |
|
| EGAF00002799065 | bam | 43.2 GB | Report |
|
| EGAF00002799066 | bam | 46.1 GB | Report |
|
| EGAF00002799067 | bam | 39.1 GB | Report |
|
| EGAF00003446953 | bam | 43.3 GB | Report |
|
| EGAF00003446954 | bam | 43.9 GB | Report |
|
| EGAF00003446955 | bam | 39.3 GB | Report |
|
| EGAF00003446956 | bam | 51.3 GB | Report |
|
| EGAF00003446957 | bam | 45.6 GB | Report |
|
| EGAF00003446958 | bam | 55.4 GB | Report |
|
| EGAF00003446959 | bam | 44.2 GB | Report |
|
| EGAF00003446960 | bam | 55.0 GB | Report |
|
| EGAF00003446961 | bam | 48.2 GB | Report |
|
| EGAF00003446962 | bam | 48.5 GB | Report |
|
| EGAF00006135254 | bam | 64.8 GB | Report |
|
| EGAF00006135255 | bam | 65.3 GB | Report |
|
| EGAF00006135256 | bam | 47.0 GB | Report |
|
| EGAF00006135257 | bam | 52.4 GB | Report |
|
| EGAF00006135258 | bam | 66.5 GB | Report |
|
| EGAF00006135259 | bam | 55.4 GB | Report |
|
| EGAF00006135260 | bam | 39.3 GB | Report |
|
| EGAF00006135261 | bam | 40.4 GB | Report |
|
| EGAF00006135262 | bam | 23.9 GB | Report |
|
| EGAF00006135263 | bam | 44.9 GB | Report |
|
| EGAF00006135264 | bam | 23.8 GB | Report |
|
| EGAF00006135265 | bam | 44.3 GB | Report |
|
| EGAF00006135266 | bam | 58.6 GB | Report |
|
| EGAF00006135267 | bam | 58.1 GB | Report |
|
| EGAF00006135268 | bam | 22.6 GB | Report |
|
| 35 Files (1.7 TB) | ||||