About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNAseq data

Bulk RNAseq of sigmoid colon biopsies from healthy volunteers and ulcerative colitis patients. Subjects were treated with Placebo or IL-22Fc at different doses, and biopsies were collected at day 0 and day 30 post treatment and prepared for RNA sequencing.

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DUO:0000015
version: 2021-02-23

no general methods research

This data use modifier indicates that use does not allow methods development research (e.g., development of software or algorithms).

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Genentech Data Access Agreement for Academic Institutions

GENENTECH DATA ACCESS COMMITTEE DATA ACCESS AGREEMENT This Data Access Agreement (“Agreement”) between Genentech, Inc. (“Genentech”) and User andUser Institution (as defined below) governs the terms on which access will be granted to thegenotype data obtained from Genentech. In signing this Agreement, User and User Institution agree to be bound by the terms and conditions of access set out in this Agreement. For the sake of clarity, the terms of access set out in this Agreement shall govern activities conducted by the User and the User Institution (as defined below). User Institution and User are referred to within the Agreement as “You” and “Your” for convenience only. Definitions: gRED means Genentech Research and Early Development. Data means all and any human genetic data generated by gRED and requested by User through submission of an Application for Access to Genotype Data and obtained from Genentech under the terms of this Agreement. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. User means a researcher who has requested Data by submitting an Application for Access to Genotype Data to gRED and whose User Institution has previously completed this Data Access Agreement with respect to such Data and has received acknowledgement of its acceptance. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. User Institution means the organization at which the User is employed, affiliated or enrolled. Genentech Data Access Committee means members of the gRED organization that are responsible for making the data access decisions for the genotype data generated by gRED. Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research. 2. You agree not to use the data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy.DSC: Academic Data Access Agreement vMar2021 1 4. You agree not to attempt to link the Data provided under this Agreement to any other data source on the same samples or to link the Data to any person or otherwise identify any Data Subject from the Data. 5. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programmanagement. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 6. You agree to use the Data for the approved purpose and project described in your Application for Access to Raw Exome Sequencing and/or RNA Sequencing Data; use of the Data for a new purpose or project will require a new application and approval. You agree to restrict your use of the Data to the analysis of somatic mutations and/or gene expression level only; use of these data to infer genotype is not permitted. 7. You agree that publication of Your purpose, project, and results is restricted for a one (1) year period starting from the publication date of the Genentech publication referencing the Data deposit. You will be free to publish the results of the research using the Data for the approved purpose after the one (1) year period has expired. You will not publish the Data, but will refer to the original Data deposit by Genentech and agree to acknowledge in any such publication that the research makes use of Data generated by Genentech. 8. You accept that Genentech: (a) bears no legal responsibility for the accuracy or comprehensiveness of the Data; and (b) accepts no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 9. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 10. You recognize that nothing in this Agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. 11. You agree that You will submit a report to the Genentech Data Access Committee, if requested, on completion of the approved purpose. The Genentech Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 12. (a) You agree to use the Data in accordance with all applicable laws, including but not limited to applicable data privacy laws. (b)The Genentech Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures. 13. This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 14 below. Upon termination, You will be required to destroy any Data held. 14. You accept that this Agreement will terminate immediately upon any breach of this Agreement by You. Either party may terminate this Agreement upon thirty (30) days written notice for any reason. The following Sections of this Agreement shall survive its expiration or termination:DSC: Academic Data Access Agreement vMar2021 2 Sections 1 – 10, 12(a), and 14-17 15. Nothing herein shall create any association, partnership, joint venture, fiduciary duty or the relation of principal and agent between the parties hereto, it being understood that each party is acting as an independent contractor, and neither party shall have the authority to bind the other or the other’s representatives in any way. 16. Except as required by law or permitted under Section 7, neither party shall use or refer to this Agreement in the public media, or use the names or marks of the other party without express prior written permission. 17. This Agreement may be executed by the parties hereto in separate counterparts, each of which when so executed and delivered shall be deemed an original, but all such counterparts shall together constitute one and the same agreement. The parties agree that execution of this Agreement by exchanging facsimile, PDF, or e-Signature (as defined below) signatures shall have the same legal force and effect as the exchange of original signatures. Pursuant to this Agreement, e-Signatures shall mean a signature that consists of one or more letters, characters, numbers or other symbols in digital form incorporated in, attached to or associated with the electronic document, that (a) is unique to the person making the signature; (b) the technology or process used to make the signature is under the sole control of the person making the signature; (b) the technology or process can be used to identify the person using the technology or process; and (d) the electronic signature can be linked with an electronic document in such a way that it can be used to determine whether the electronic document has been changed since the electronic signature was incorporated in, attached to or associated with the electronic document. The written form shall be required to make changes to this clause as well. IN WITNESS WHEREOF, the parties have caused this Agreement to be executed by their respective duly authorized representatives as set forth below. Genentech, Inc. For and on behalf of User Institution: (Institutional or Administrative Authority) Signature: Signature: Print Name: Print Name: Title: Title: Date: Date: Read and acknowledged by User/Applicant: Signature: Print Name: Title: Date:DSC: Academic Data Access Agreement vMar2021 3

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006172 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00006172830 fastq.gz 738.3 MB Report
EGAF00006172831 fastq.gz 761.3 MB Report
EGAF00006172832 fastq.gz 774.7 MB Report
EGAF00006172833 fastq.gz 804.3 MB Report
EGAF00006172834 fastq.gz 581.4 MB Report
EGAF00006172835 fastq.gz 599.8 MB Report
EGAF00006172836 fastq.gz 933.9 MB Report
EGAF00006172837 fastq.gz 927.0 MB Report
EGAF00006172838 fastq.gz 529.2 MB Report
EGAF00006172839 fastq.gz 546.2 MB Report
EGAF00006172840 fastq.gz 620.7 MB Report
EGAF00006172841 fastq.gz 642.7 MB Report
EGAF00006172842 fastq.gz 639.8 MB Report
EGAF00006172843 fastq.gz 661.7 MB Report
EGAF00006172844 fastq.gz 917.3 MB Report
EGAF00006172845 fastq.gz 905.7 MB Report
EGAF00006172846 fastq.gz 590.3 MB Report
EGAF00006172847 fastq.gz 611.4 MB Report
EGAF00006172848 fastq.gz 693.7 MB Report
EGAF00006172849 fastq.gz 715.3 MB Report
EGAF00006172850 fastq.gz 615.3 MB Report
EGAF00006172851 fastq.gz 633.2 MB Report
EGAF00006172852 fastq.gz 702.4 MB Report
EGAF00006172853 fastq.gz 695.5 MB Report
EGAF00006172854 fastq.gz 526.3 MB Report
EGAF00006172855 fastq.gz 540.1 MB Report
EGAF00006172856 fastq.gz 715.4 MB Report
EGAF00006172857 fastq.gz 709.6 MB Report
EGAF00006172858 fastq.gz 533.2 MB Report
EGAF00006172859 fastq.gz 551.1 MB Report
EGAF00006172860 fastq.gz 683.1 MB Report
EGAF00006172861 fastq.gz 708.4 MB Report
EGAF00006172862 fastq.gz 567.8 MB Report
EGAF00006172863 fastq.gz 585.6 MB Report
EGAF00006172864 fastq.gz 613.2 MB Report
EGAF00006172865 fastq.gz 629.9 MB Report
EGAF00006172866 fastq.gz 688.8 MB Report
EGAF00006172867 fastq.gz 711.9 MB Report
EGAF00006172868 fastq.gz 594.8 MB Report
EGAF00006172869 fastq.gz 613.2 MB Report
EGAF00006172870 fastq.gz 595.8 MB Report
EGAF00006172871 fastq.gz 614.6 MB Report
EGAF00006172872 fastq.gz 639.4 MB Report
EGAF00006172873 fastq.gz 662.4 MB Report
EGAF00006172874 fastq.gz 687.4 MB Report
EGAF00006172875 fastq.gz 709.0 MB Report
EGAF00006172876 fastq.gz 781.9 MB Report
EGAF00006172877 fastq.gz 804.3 MB Report
EGAF00006172878 fastq.gz 668.2 MB Report
EGAF00006172879 fastq.gz 689.5 MB Report
EGAF00006172880 fastq.gz 607.4 MB Report
EGAF00006172881 fastq.gz 626.6 MB Report
EGAF00006172882 fastq.gz 761.7 MB Report
EGAF00006172883 fastq.gz 747.3 MB Report
EGAF00006172884 fastq.gz 641.6 MB Report
EGAF00006172885 fastq.gz 662.5 MB Report
EGAF00006172886 fastq.gz 674.1 MB Report
EGAF00006172887 fastq.gz 697.1 MB Report
EGAF00006172888 fastq.gz 657.0 MB Report
EGAF00006172889 fastq.gz 678.0 MB Report
EGAF00006172890 fastq.gz 626.5 MB Report
EGAF00006172891 fastq.gz 649.9 MB Report
EGAF00006172892 fastq.gz 710.8 MB Report
EGAF00006172893 fastq.gz 734.0 MB Report
EGAF00006172894 fastq.gz 973.1 MB Report
EGAF00006172895 fastq.gz 1.0 GB Report
EGAF00006172896 fastq.gz 817.5 MB Report
EGAF00006172897 fastq.gz 845.3 MB Report
EGAF00006172898 fastq.gz 647.5 MB Report
EGAF00006172899 fastq.gz 666.1 MB Report
EGAF00006172900 fastq.gz 562.7 MB Report
EGAF00006172901 fastq.gz 579.1 MB Report
EGAF00006172902 fastq.gz 555.9 MB Report
EGAF00006172903 fastq.gz 571.7 MB Report
EGAF00006172904 fastq.gz 801.5 MB Report
EGAF00006172905 fastq.gz 829.8 MB Report
EGAF00006172906 fastq.gz 588.9 MB Report
EGAF00006172907 fastq.gz 608.8 MB Report
EGAF00006172908 fastq.gz 465.0 MB Report
EGAF00006172909 fastq.gz 479.1 MB Report
EGAF00006172910 fastq.gz 743.9 MB Report
EGAF00006172911 fastq.gz 769.6 MB Report
EGAF00006172912 fastq.gz 620.1 MB Report
EGAF00006172913 fastq.gz 637.0 MB Report
EGAF00006172914 fastq.gz 654.4 MB Report
EGAF00006172915 fastq.gz 673.3 MB Report
EGAF00006172916 fastq.gz 709.0 MB Report
EGAF00006172917 fastq.gz 730.3 MB Report
EGAF00006172918 fastq.gz 896.8 MB Report
EGAF00006172919 fastq.gz 892.4 MB Report
EGAF00006172920 fastq.gz 499.0 MB Report
EGAF00006172921 fastq.gz 513.1 MB Report
EGAF00006172922 fastq.gz 668.3 MB Report
EGAF00006172923 fastq.gz 689.2 MB Report
EGAF00006172924 fastq.gz 671.6 MB Report
EGAF00006172925 fastq.gz 692.4 MB Report
EGAF00006172926 fastq.gz 663.9 MB Report
EGAF00006172927 fastq.gz 656.1 MB Report
EGAF00006172928 fastq.gz 671.5 MB Report
EGAF00006172929 fastq.gz 694.6 MB Report
EGAF00006172930 fastq.gz 709.1 MB Report
EGAF00006172931 fastq.gz 734.7 MB Report
EGAF00006172932 fastq.gz 634.8 MB Report
EGAF00006172933 fastq.gz 652.4 MB Report
EGAF00006172934 fastq.gz 700.8 MB Report
EGAF00006172935 fastq.gz 724.2 MB Report
EGAF00006172936 fastq.gz 840.2 MB Report
EGAF00006172937 fastq.gz 865.1 MB Report
EGAF00006172938 fastq.gz 592.8 MB Report
EGAF00006172939 fastq.gz 611.8 MB Report
EGAF00006172940 fastq.gz 914.2 MB Report
EGAF00006172941 fastq.gz 905.5 MB Report
EGAF00006172942 fastq.gz 876.4 MB Report
EGAF00006172943 fastq.gz 868.7 MB Report
EGAF00006172944 fastq.gz 648.7 MB Report
EGAF00006172945 fastq.gz 668.3 MB Report
EGAF00006172946 fastq.gz 647.8 MB Report
EGAF00006172947 fastq.gz 670.6 MB Report
EGAF00006172948 fastq.gz 487.9 MB Report
EGAF00006172949 fastq.gz 501.2 MB Report
EGAF00006172950 fastq.gz 910.0 MB Report
EGAF00006172951 fastq.gz 898.5 MB Report
EGAF00006172952 fastq.gz 609.9 MB Report
EGAF00006172953 fastq.gz 627.8 MB Report
EGAF00006172954 fastq.gz 535.3 MB Report
EGAF00006172955 fastq.gz 551.9 MB Report
EGAF00006172956 fastq.gz 719.7 MB Report
EGAF00006172957 fastq.gz 745.2 MB Report
EGAF00006172958 fastq.gz 677.8 MB Report
EGAF00006172959 fastq.gz 669.6 MB Report
EGAF00006172960 fastq.gz 560.6 MB Report
EGAF00006172961 fastq.gz 577.7 MB Report
EGAF00006172962 fastq.gz 678.4 MB Report
EGAF00006172963 fastq.gz 699.6 MB Report
EGAF00006172964 fastq.gz 741.9 MB Report
EGAF00006172965 fastq.gz 731.3 MB Report
EGAF00006172966 fastq.gz 869.8 MB Report
EGAF00006172967 fastq.gz 862.0 MB Report
EGAF00006172968 fastq.gz 661.9 MB Report
EGAF00006172969 fastq.gz 657.5 MB Report
EGAF00006172970 fastq.gz 635.7 MB Report
EGAF00006172971 fastq.gz 656.8 MB Report
EGAF00006172972 fastq.gz 495.6 MB Report
EGAF00006172973 fastq.gz 508.9 MB Report
EGAF00006172974 fastq.gz 517.0 MB Report
EGAF00006172975 fastq.gz 533.1 MB Report
EGAF00006172976 fastq.gz 587.9 MB Report
EGAF00006172977 fastq.gz 603.7 MB Report
EGAF00006172978 fastq.gz 676.7 MB Report
EGAF00006172979 fastq.gz 700.4 MB Report
EGAF00006172980 fastq.gz 606.8 MB Report
EGAF00006172981 fastq.gz 626.1 MB Report
EGAF00006172982 fastq.gz 542.5 MB Report
EGAF00006172983 fastq.gz 556.3 MB Report
EGAF00006172984 fastq.gz 825.1 MB Report
EGAF00006172985 fastq.gz 852.0 MB Report
EGAF00006172986 fastq.gz 420.8 MB Report
EGAF00006172987 fastq.gz 432.8 MB Report
EGAF00006172988 fastq.gz 633.3 MB Report
EGAF00006172989 fastq.gz 651.2 MB Report
EGAF00006172990 fastq.gz 543.8 MB Report
EGAF00006172991 fastq.gz 559.9 MB Report
EGAF00006172992 fastq.gz 619.5 MB Report
EGAF00006172993 fastq.gz 638.7 MB Report
EGAF00006172994 fastq.gz 911.7 MB Report
EGAF00006172995 fastq.gz 907.1 MB Report
166 Files (112.4 GB)