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Analysis of transcriptomic data

Thirty six samples were sequenced and analysed.

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Data access policy defines access to the data from GLIOMED_WUM_GBM_5_20_TUMOR archive for the external users.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom WUM GLIOMED Data Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: WUM GLIOMED Data Access Committee responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. WUM_GLIOMED Data Access Committee: Department of Histology and Embryology, Centre for Biostructure Research, Medical University of Warsaw, Chałubińskiego 5, 02-004 Warsaw, Poland   1. The User Institution agrees to only use these Data for the purpose of the Project (described before accessing the data) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in the project description. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use all measures to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Toronto Statement ( This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy of the Data. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) ( ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify WUM GLIOMED Data Access Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify WUM GLIOMED Data Access Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify WUM GLIOMED Data Access Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. WUM GLIOMED Data Access Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than WUM GLIOMED Data Access Committee. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. Any agreements based on that policies (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of European Union and shall be subject to the exclusive jurisdiction of the Polish and EU courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006267 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006167097 fastq.gz 1.6 GB
EGAF00006167098 fastq.gz 1.6 GB
EGAF00006167099 fastq.gz 1.2 GB
EGAF00006167100 fastq.gz 1.2 GB
EGAF00006167101 fastq.gz 1.4 GB
EGAF00006167102 fastq.gz 1.4 GB
EGAF00006167103 fastq.gz 1.3 GB
EGAF00006167104 fastq.gz 1.3 GB
EGAF00006167105 fastq.gz 1.5 GB
EGAF00006167106 fastq.gz 1.6 GB
EGAF00006167107 fastq.gz 1.6 GB
EGAF00006167108 fastq.gz 1.7 GB
EGAF00006167109 fastq.gz 1.3 GB
EGAF00006167110 fastq.gz 1.4 GB
EGAF00006167111 fastq.gz 1.2 GB
EGAF00006167112 fastq.gz 1.3 GB
EGAF00006167113 fastq.gz 1.1 GB
EGAF00006167114 fastq.gz 1.1 GB
EGAF00006167115 fastq.gz 1.2 GB
EGAF00006167116 fastq.gz 1.3 GB
EGAF00006167117 fastq.gz 1.3 GB
EGAF00006167118 fastq.gz 1.3 GB
EGAF00006167119 fastq.gz 1.3 GB
EGAF00006167120 fastq.gz 1.3 GB
EGAF00006167121 fastq.gz 1.2 GB
EGAF00006167122 fastq.gz 1.2 GB
EGAF00006167123 fastq.gz 1.3 GB
EGAF00006167124 fastq.gz 1.3 GB
EGAF00006167125 fastq.gz 1.2 GB
EGAF00006167126 fastq.gz 1.2 GB
EGAF00006167127 fastq.gz 1.6 GB
EGAF00006167128 fastq.gz 1.7 GB
EGAF00006167129 fastq.gz 1.3 GB
EGAF00006167130 fastq.gz 1.3 GB
EGAF00006167131 fastq.gz 1.3 GB
EGAF00006167132 fastq.gz 1.3 GB
EGAF00006167133 fastq.gz 1.2 GB
EGAF00006167134 fastq.gz 1.2 GB
EGAF00006167135 fastq.gz 1.3 GB
EGAF00006167136 fastq.gz 1.3 GB
EGAF00006167137 fastq.gz 1.5 GB
EGAF00006167138 fastq.gz 1.5 GB
EGAF00006167139 fastq.gz 1.3 GB
EGAF00006167140 fastq.gz 1.4 GB
EGAF00006167141 fastq.gz 1.5 GB
EGAF00006167142 fastq.gz 1.5 GB
EGAF00006167143 fastq.gz 1.4 GB
EGAF00006167144 fastq.gz 1.4 GB
EGAF00006167145 fastq.gz 1.1 GB
EGAF00006167146 fastq.gz 1.2 GB
EGAF00006167147 fastq.gz 1.3 GB
EGAF00006167148 fastq.gz 1.3 GB
EGAF00006167149 fastq.gz 1.3 GB
EGAF00006167150 fastq.gz 1.4 GB
EGAF00006167151 fastq.gz 1.2 GB
EGAF00006167152 fastq.gz 1.3 GB
EGAF00006167153 fastq.gz 1.5 GB
EGAF00006167154 fastq.gz 1.6 GB
EGAF00006167155 fastq.gz 1.5 GB
EGAF00006167156 fastq.gz 1.5 GB
EGAF00006167157 fastq.gz 1.3 GB
EGAF00006167158 fastq.gz 1.3 GB
EGAF00006167159 fastq.gz 1.1 GB
EGAF00006167160 fastq.gz 1.2 GB
EGAF00006167161 fastq.gz 1.2 GB
EGAF00006167162 fastq.gz 1.3 GB
EGAF00006167163 fastq.gz 1.4 GB
EGAF00006167164 fastq.gz 1.5 GB
EGAF00006167165 fastq.gz 1.2 GB
EGAF00006167166 fastq.gz 1.2 GB
EGAF00006167167 fastq.gz 1.7 GB
EGAF00006167168 fastq.gz 1.8 GB
72 Files (97.3 GB)