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WGS of cell-free DNA derived from plasma of CRC patients and healthy controls, and WGS of matched tumor tissue and saliva

This dataset contains: 1.) Whole-genome sequencing (WGS) data (~6x) of 259 cfDNA samples obtained from 50 colorectal cancer (CRC) patients and 61 healthy controls. Paired-end sequencing was performed with 2x101 bp reads on the NovaSeq 6000 system. Data is provided as mapped .bam files (aligned to GRCh38/hg38). 2.) WGS data (~1x) of 50 tumor biopsy and 45 saliva samples from CRC patients. Paired-end sequencing was performed with 2x101 bp reads on the NovaSeq 6000 system. Data is provided as mapped .bam files (aligned to GRCh38/hg38).

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harmonised Data Access Agreement (hDAA) in accordance with the Laws of Germany

harmonised Data Access Agreement (hDAA) Definitions GDPR: This hDAA makes both parties compliant with the Regulation (EU) 2016/679 of the European Parliament and of the Council, that is, the General Data Protection Regulation (herein referred to as the ‘GDPR’). Data: Refers to controlled access data (the Data). Under this Agreement, the Data is pseudonymised. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve them from the Data Controller’s Institution upon approval of this hDAA by the corresponding DAC within the Data Controller’s Institution. Data Handling: Refers to an Institution’s ability to analyse and manipulate the Data within its own computer network. Data Controller(s): Refers to an Institution, responsible for the generation of the Data and its pseudonymisation. A key-code permitting relinkage to Data Subjects is kept by the Data Controller(s). Data Subject: Refers to any individual who is the source of any Data covered by this Agreement. Data Recipient (‘You’): Refers to the Institution who requests Access to the Data through this Agreement. Authorised Personnel: The individual(s) at the Institution requesting Access to the Data. Research Project: The Project for which You have requested Access to the Data. Publications: Refers, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters, and other written and verbal presentations of Research that have been accepted by peer review. EU-STANDS4PM: This hDAA was developed by the EU-STANDS4PM, http://www/eu-stands4pm.eu/ Terms and Conditions In signing this Agreement: 1. You, the Data Recipient, agree to only use the Data for the Purpose of the Project. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to identify Data Subjects. 4. You and your Authorised Personnel agree to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 5. You agree that in handling this Data You will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 6. You acknowledge that Access to the Data is granted for the duration of the Project described in Section I, as well as any new Project under the same research field or area. Any use of the Data for a Project of another research field or area will need to be approved under a new Agreement. 7. You recognize that nothing in this Agreement shall operate to transfer to You any intellectual property rights to the Data. 8. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block Access to, or use of, any element of the Data. 9. You can elect to perform further Research that would add intellectual and resource capital to the Data, and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further Research, following the Organisation for Economic Co-operation and Development Guidelines. 10. You agree that the Research Project 1) bears no legal responsibility for the accuracy or comprehensiveness of the Data; 2) accepts no liability for indirect, consequential, or incidental damages or losses arising from use of the Data; and 3) bears no responsibility for the further analysis or interpretation of these Data over and above that published by the Controller(s). 11. You agree to hold the Data Subject(s) and Data Controller(s) harmless and to defend and indemnify all these parties against all liabilities, demands, damages, expenses, and losses arising out of Your use for any Purpose of the Data. 12. You agree to a moratorium on publishing global analyses of the dataset until the Data Controller(s) have published their own global analysis or twelve (12) months, the maximum, have passed from the time the Data were deposited, whichever occurs first. You acknowledge that prompt publication or public disclosure of the results of the Research Project is encouraged. You also agree that by publishing Your global analyses of the Data, you will not disclose any results generated from the Data. 13. You agree to acknowledge the contribution of the Data Controller(s) in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. 14. You agree to use the Data in Your laboratory. Any Authorised Personnel shall work under Your direct supervision. You agree to distribute a copy of these terms to the Authorised Personnel. 15. You may not transfer any information included in the Data to anyone unless specifically designated in the Research Project, or by prior specific or general written authorisation of the Data Controller(s) responsible for the generation of the original Data in each case. 16. You may not transfer the Data itself to anyone outside the Institution, unless the Controller(s) has (have) approved such transfer and its terms in writing. 17. Should You wish to share the Data with an external collaborator, the external collaborator must complete a separate Data Access Agreement. 18. You shall ensure that ‘all’ who have Access to the Data, namely You and Your Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. You remain solely and fully responsible for Your Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 19. In case of a breach of security resulting from ‘accidental’ use of Data by You and Your Authorised Personnel, which leads to disclosure of Data, then You must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 20. In case of a ‘non-accidental or minor’ breach of hDAA by You You will further be required to destroy any Data held. 21. You accept that this Agreement will terminate immediately upon ‘any’ breach by You, or its termination (see Section I). 22. You endeavour to settle any dispute with the Data Controller(s) amicably. If you are unable to reach an Agreement, you will meet and negotiate in good faith in an effort to resolve the issue. If the issue has not been resolved within a reasonable period (e.g. 30 calendar days), you are both entitled to submit it for resolution by an arbitrator. 23. Further, the language of the proceedings will be ‘English’ if not otherwise agreed. The award of the arbitration will be final and binding upon the parties concerned. 24. This Agreement (and any dispute, controversy, proceedings, or claim of whatever nature arising out of it or its formation) shall be interpreted, governed by and construed in accordance with the Laws of Germany, and shall be subject to the exclusive jurisdiction of the German Courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006490 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00006924111 bam 11.7 GB
EGAF00006924112 bam 12.8 GB
EGAF00006924113 bam 11.0 GB
EGAF00006924114 bam 3.1 GB
EGAF00006924115 bam 2.9 GB
EGAF00006924116 bam 12.6 GB
EGAF00006924117 bam 2.2 GB
EGAF00006924118 bam 3.5 GB
EGAF00006924119 bam 11.2 GB
EGAF00006924120 bam 11.2 GB
EGAF00006924121 bam 13.1 GB
EGAF00006924122 bam 16.7 GB
EGAF00006924123 bam 14.8 GB
EGAF00006924124 bam 14.6 GB
EGAF00006924125 bam 12.9 GB
EGAF00006924126 bam 14.1 GB
EGAF00006924127 bam 10.8 GB
EGAF00006924128 bam 13.7 GB
EGAF00006924129 bam 15.9 GB
EGAF00006924130 bam 24.8 GB
EGAF00006924131 bam 29.3 GB
EGAF00006924132 bam 21.8 GB
EGAF00006924133 bam 23.7 GB
EGAF00006924134 bam 16.1 GB
EGAF00006924135 bam 3.2 GB
EGAF00006924136 bam 4.1 GB
EGAF00006924137 bam 7.2 GB
EGAF00006924138 bam 13.9 GB
EGAF00006924139 bam 19.9 GB
EGAF00006924140 bam 20.4 GB
EGAF00006924141 bam 19.0 GB
EGAF00006924142 bam 18.6 GB
EGAF00006924143 bam 9.4 GB
EGAF00006924144 bam 3.1 GB
EGAF00006924145 bam 3.2 GB
EGAF00006924146 bam 11.2 GB
EGAF00006924147 bam 10.8 GB
EGAF00006924148 bam 2.5 GB
EGAF00006924149 bam 3.3 GB
EGAF00006924150 bam 11.8 GB
EGAF00006924151 bam 5.0 GB
EGAF00006924152 bam 12.1 GB
EGAF00006924153 bam 8.8 GB
EGAF00006924154 bam 4.0 GB
EGAF00006924155 bam 2.0 GB
EGAF00006924156 bam 10.3 GB
EGAF00006924157 bam 11.8 GB
EGAF00006924158 bam 1.8 GB
EGAF00006924159 bam 2.5 GB
EGAF00006924160 bam 7.4 GB
EGAF00006924161 bam 14.1 GB
EGAF00006924162 bam 10.7 GB
EGAF00006924163 bam 2.3 GB
EGAF00006924164 bam 3.4 GB
EGAF00006924165 bam 10.6 GB
EGAF00006924166 bam 7.0 GB
EGAF00006924167 bam 8.9 GB
EGAF00006924168 bam 3.0 GB
EGAF00006924169 bam 3.7 GB
EGAF00006924170 bam 10.6 GB
EGAF00006924171 bam 12.9 GB
EGAF00006924172 bam 1.9 GB
EGAF00006924173 bam 2.0 GB
EGAF00006924174 bam 16.2 GB
EGAF00006924175 bam 2.4 GB
EGAF00006924176 bam 3.1 GB
EGAF00006924177 bam 10.0 GB
EGAF00006924178 bam 30.2 GB
EGAF00006924179 bam 2.6 GB
EGAF00006924180 bam 3.3 GB
EGAF00006924181 bam 10.4 GB
EGAF00006924182 bam 11.3 GB
EGAF00006924183 bam 1.5 GB
EGAF00006924184 bam 3.0 GB
EGAF00006924185 bam 14.2 GB
EGAF00006924186 bam 18.6 GB
EGAF00006924187 bam 23.0 GB
EGAF00006924188 bam 629.0 MB
EGAF00006924189 bam 4.4 GB
EGAF00006924190 bam 13.2 GB
EGAF00006924191 bam 12.1 GB
EGAF00006924192 bam 2.3 GB
EGAF00006924193 bam 2.4 GB
EGAF00006924194 bam 11.3 GB
EGAF00006924195 bam 15.9 GB
EGAF00006924196 bam 15.0 GB
EGAF00006924197 bam 17.5 GB
EGAF00006924198 bam 16.1 GB
EGAF00006924199 bam 16.1 GB
EGAF00006924200 bam 16.0 GB
EGAF00006924201 bam 14.2 GB
EGAF00006924202 bam 11.6 GB
EGAF00006924203 bam 11.5 GB
EGAF00006924204 bam 11.5 GB
EGAF00006924205 bam 8.2 GB
EGAF00006924206 bam 6.0 GB
EGAF00006924207 bam 15.3 GB
EGAF00006924208 bam 13.3 GB
EGAF00006924209 bam 9.4 GB
EGAF00006924210 bam 11.2 GB
EGAF00006924211 bam 8.5 GB
EGAF00006924212 bam 7.3 GB
EGAF00006924213 bam 9.1 GB
EGAF00006924214 bam 10.0 GB
EGAF00006924215 bam 10.6 GB
EGAF00006924216 bam 8.8 GB
EGAF00006924217 bam 4.2 GB
EGAF00006924218 bam 2.6 GB
EGAF00006924219 bam 10.8 GB
EGAF00006924220 bam 1.9 GB
EGAF00006924221 bam 2.6 GB
EGAF00006924222 bam 7.4 GB
EGAF00006924223 bam 11.7 GB
EGAF00006924224 bam 13.9 GB
EGAF00006924225 bam 11.6 GB
EGAF00006924226 bam 15.8 GB
EGAF00006924227 bam 14.0 GB
EGAF00006924228 bam 11.0 GB
EGAF00006924229 bam 21.4 GB
EGAF00006924230 bam 15.6 GB
EGAF00006924231 bam 12.7 GB
EGAF00006924232 bam 11.2 GB
EGAF00006924233 bam 14.5 GB
EGAF00006924234 bam 8.6 GB
EGAF00006924235 bam 17.8 GB
EGAF00006924236 bam 14.5 GB
EGAF00006924237 bam 3.2 GB
EGAF00006924238 bam 2.9 GB
EGAF00006924239 bam 7.7 GB
EGAF00006924240 bam 13.3 GB
EGAF00006924241 bam 4.9 GB
EGAF00006924242 bam 14.9 GB
EGAF00006924243 bam 12.8 GB
EGAF00006924244 bam 11.8 GB
EGAF00006924245 bam 11.0 GB
EGAF00006924246 bam 3.4 GB
EGAF00006924247 bam 3.3 GB
EGAF00006924248 bam 17.0 GB
EGAF00006924249 bam 14.1 GB
EGAF00006924250 bam 3.3 GB
EGAF00006924251 bam 3.1 GB
EGAF00006924252 bam 12.3 GB
EGAF00006924253 bam 12.1 GB
EGAF00006924254 bam 12.2 GB
EGAF00006924255 bam 13.4 GB
EGAF00006924256 bam 11.4 GB
EGAF00006924257 bam 12.0 GB
EGAF00006924258 bam 14.2 GB
EGAF00006924259 bam 11.6 GB
EGAF00006924260 bam 12.4 GB
EGAF00006924261 bam 12.2 GB
EGAF00006924262 bam 11.1 GB
EGAF00006924263 bam 20.1 GB
EGAF00006924264 bam 7.3 GB
EGAF00006924265 bam 13.7 GB
EGAF00006924266 bam 15.3 GB
EGAF00006924267 bam 10.7 GB
EGAF00006924268 bam 3.1 GB
EGAF00006924269 bam 3.1 GB
EGAF00006924270 bam 12.1 GB
EGAF00006924271 bam 16.4 GB
EGAF00006924272 bam 13.9 GB
EGAF00006924273 bam 2.7 GB
EGAF00006924274 bam 3.9 GB
EGAF00006924275 bam 16.7 GB
EGAF00006924276 bam 12.7 GB
EGAF00006924277 bam 10.5 GB
EGAF00006924278 bam 12.7 GB
EGAF00006924279 bam 11.4 GB
EGAF00006924280 bam 18.7 GB
EGAF00006924281 bam 12.1 GB
EGAF00006924282 bam 9.7 GB
EGAF00006924283 bam 2.5 GB
EGAF00006924284 bam 3.4 GB
EGAF00006924285 bam 12.0 GB
EGAF00006924286 bam 11.9 GB
EGAF00006924287 bam 2.8 GB
EGAF00006924288 bam 2.7 GB
EGAF00006924289 bam 11.5 GB
EGAF00006924290 bam 11.0 GB
EGAF00006924291 bam 2.4 GB
EGAF00006924292 bam 2.4 GB
EGAF00006924293 bam 16.5 GB
EGAF00006924294 bam 11.9 GB
EGAF00006924295 bam 13.7 GB
EGAF00006924296 bam 3.0 GB
EGAF00006924297 bam 2.8 GB
EGAF00006924298 bam 11.0 GB
EGAF00006924299 bam 11.9 GB
EGAF00006924300 bam 15.4 GB
EGAF00006924301 bam 21.4 GB
EGAF00006924302 bam 13.7 GB
EGAF00006924303 bam 15.5 GB
EGAF00006924304 bam 10.9 GB
EGAF00006924305 bam 14.4 GB
EGAF00006924306 bam 11.1 GB
EGAF00006924307 bam 13.7 GB
EGAF00006924308 bam 2.3 GB
EGAF00006924309 bam 3.8 GB
EGAF00006924310 bam 18.1 GB
EGAF00006924311 bam 14.2 GB
EGAF00006924312 bam 26.7 GB
EGAF00006924313 bam 19.0 GB
EGAF00006924314 bam 2.1 GB
EGAF00006924315 bam 3.5 GB
EGAF00006924316 bam 11.2 GB
EGAF00006924317 bam 12.4 GB
EGAF00006924318 bam 1.7 GB
EGAF00006924319 bam 2.5 GB
EGAF00006924320 bam 17.9 GB
EGAF00006924321 bam 11.4 GB
EGAF00006924322 bam 2.6 GB
EGAF00006924323 bam 3.8 GB
EGAF00006924324 bam 15.1 GB
EGAF00006924325 bam 10.7 GB
EGAF00006924326 bam 19.4 GB
EGAF00006924327 bam 16.2 GB
EGAF00006924328 bam 2.2 GB
EGAF00006924329 bam 3.6 GB
EGAF00006924330 bam 17.8 GB
EGAF00006924331 bam 10.9 GB
EGAF00006924332 bam 16.0 GB
EGAF00006924333 bam 12.3 GB
EGAF00006924334 bam 11.9 GB
EGAF00006924335 bam 12.4 GB
EGAF00006924336 bam 3.0 GB
EGAF00006924337 bam 3.7 GB
EGAF00006924338 bam 14.8 GB
EGAF00006924339 bam 14.3 GB
EGAF00006924340 bam 2.4 GB
EGAF00006924341 bam 2.4 GB
EGAF00006924342 bam 10.5 GB
EGAF00006924343 bam 10.0 GB
EGAF00006924344 bam 1.8 GB
EGAF00006924345 bam 2.0 GB
EGAF00006924346 bam 10.7 GB
EGAF00006924347 bam 2.1 GB
EGAF00006924348 bam 3.0 GB
EGAF00006924349 bam 13.1 GB
EGAF00006924350 bam 24.2 GB
EGAF00006924351 bam 2.9 GB
EGAF00006924352 bam 3.4 GB
EGAF00006924353 bam 14.3 GB
EGAF00006924354 bam 22.9 GB
EGAF00006924355 bam 16.2 GB
EGAF00006924356 bam 2.2 GB
EGAF00006924357 bam 3.9 GB
EGAF00006924358 bam 25.9 GB
EGAF00006924359 bam 23.7 GB
EGAF00006924360 bam 3.2 GB
EGAF00006924361 bam 17.3 GB
EGAF00006924362 bam 24.0 GB
EGAF00006924363 bam 29.5 GB
EGAF00006924364 bam 14.5 GB
EGAF00006924365 bam 26.7 GB
EGAF00006924366 bam 3.1 GB
EGAF00006924367 bam 3.5 GB
EGAF00006924368 bam 11.2 GB
EGAF00006924369 bam 10.2 GB
EGAF00006924370 bam 2.4 GB
EGAF00006924371 bam 3.1 GB
EGAF00006924372 bam 10.3 GB
EGAF00006924373 bam 9.7 GB
EGAF00006924374 bam 3.3 GB
EGAF00006924375 bam 10.2 GB
EGAF00006924376 bam 9.4 GB
EGAF00006924377 bam 2.3 GB
EGAF00006924378 bam 3.5 GB
EGAF00006924379 bam 11.6 GB
EGAF00006924380 bam 8.8 GB
EGAF00006924381 bam 2.6 GB
EGAF00006924382 bam 2.6 GB
EGAF00006924383 bam 9.8 GB
EGAF00006924384 bam 10.0 GB
EGAF00006924385 bam 3.9 GB
EGAF00006924386 bam 8.9 GB
EGAF00006924387 bam 9.9 GB
EGAF00006924388 bam 2.1 GB
EGAF00006924389 bam 2.2 GB
EGAF00006924390 bam 11.7 GB
EGAF00006924391 bam 2.0 GB
EGAF00006924392 bam 11.9 GB
EGAF00006924393 bam 12.4 GB
EGAF00006924394 bam 2.2 GB
EGAF00006924395 bam 2.7 GB
EGAF00006924396 bam 12.8 GB
EGAF00006924397 bam 11.7 GB
EGAF00006924398 bam 2.0 GB
EGAF00006924399 bam 2.0 GB
EGAF00006924400 bam 12.1 GB
EGAF00006924401 bam 3.5 GB
EGAF00006924402 bam 10.1 GB
EGAF00006924403 bam 3.5 GB
EGAF00006924404 bam 12.5 GB
EGAF00006924405 bam 11.6 GB
EGAF00006924406 bam 16.7 GB
EGAF00006924407 bam 12.3 GB
EGAF00006924408 bam 15.1 GB
EGAF00006924409 bam 16.0 GB
EGAF00006924410 bam 10.9 GB
EGAF00006924411 bam 13.5 GB
EGAF00006924412 bam 13.9 GB
EGAF00006924413 bam 14.3 GB
EGAF00006924414 bam 12.4 GB
EGAF00006924415 bam 13.1 GB
EGAF00006924416 bam 22.3 GB
EGAF00006924417 bam 11.1 GB
EGAF00006924418 bam 12.8 GB
EGAF00006924419 bam 14.3 GB
EGAF00006924420 bam 12.2 GB
EGAF00006924421 bam 9.7 GB
EGAF00006924422 bam 17.1 GB
EGAF00006924423 bam 16.2 GB
EGAF00006924424 bam 12.7 GB
EGAF00006924425 bam 13.0 GB
EGAF00006924426 bam 11.8 GB
EGAF00006924427 bam 10.1 GB
EGAF00006924428 bam 13.1 GB
EGAF00006924429 bam 13.2 GB
EGAF00006924430 bam 11.9 GB
EGAF00006924431 bam 13.5 GB
EGAF00006924432 bam 11.4 GB
EGAF00006924433 bam 13.6 GB
EGAF00006924434 bam 13.8 GB
EGAF00006924435 bam 21.0 GB
EGAF00006924436 bam 14.7 GB
EGAF00006924437 bam 18.3 GB
EGAF00006924438 bam 17.4 GB
EGAF00006924439 bam 7.6 GB
EGAF00006924440 bam 11.6 GB
EGAF00006924441 bam 14.4 GB
EGAF00006924442 bam 12.0 GB
EGAF00006924443 bam 8.8 GB
EGAF00006924444 bam 12.5 GB
EGAF00006924445 bam 9.9 GB
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EGAF00006924447 bam 7.8 GB
EGAF00006924448 bam 16.8 GB
EGAF00006924449 bam 9.0 GB
EGAF00006924450 bam 9.6 GB
EGAF00006924451 bam 14.3 GB
EGAF00006924452 bam 13.4 GB
EGAF00006924453 bam 12.2 GB
EGAF00006924454 bam 18.1 GB
EGAF00006924455 bam 13.4 GB
EGAF00006924456 bam 12.8 GB
EGAF00006924457 bam 12.2 GB
EGAF00006924458 bam 10.1 GB
EGAF00006924459 bam 15.3 GB
EGAF00006924460 bam 15.1 GB
EGAF00006924461 bam 14.4 GB
EGAF00006924462 bam 14.7 GB
EGAF00006924463 bam 14.0 GB
EGAF00006924464 bam 14.6 GB
354 Files (3.8 TB)