About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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ChIPseq sequence of liver cancer

There are 61 samples

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Data Assess policy for CUHK liver cancer project

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Nathalie Wong grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Nathalie Wong and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. The Chinese University of Hong Kong: Your Institution details here 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Nathalie Wong within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Nathalie Wong prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Nathalie Wong as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Nathalie Wong may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Nathalie Wong. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. Applicants should ask for Appendix I,II, III by email.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005779 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007884212 fq.gz 478.9 MB
EGAF00007884213 fq.gz 515.4 MB
EGAF00007884214 fq.gz 471.5 MB
EGAF00007884215 fq.gz 507.7 MB
EGAF00007884216 fq.gz 476.2 MB
EGAF00007884217 fq.gz 513.7 MB
EGAF00007884218 fq.gz 485.2 MB
EGAF00007884219 fq.gz 521.0 MB
EGAF00007884220 fq.gz 607.0 MB
EGAF00007884221 fq.gz 646.9 MB
EGAF00007884222 fq.gz 594.6 MB
EGAF00007884223 fq.gz 635.7 MB
EGAF00007884224 fq.gz 603.4 MB
EGAF00007884225 fq.gz 644.3 MB
EGAF00007884226 fq.gz 609.0 MB
EGAF00007884227 fq.gz 650.3 MB
EGAF00007884228 fq.gz 244.3 MB
EGAF00007884229 fq.gz 268.0 MB
EGAF00007884230 fq.gz 243.4 MB
EGAF00007884231 fq.gz 268.4 MB
EGAF00007884232 fq.gz 247.3 MB
EGAF00007884233 fq.gz 270.8 MB
EGAF00007884234 fq.gz 244.6 MB
EGAF00007884235 fq.gz 270.0 MB
EGAF00007884236 fastq.gz 341.9 MB
EGAF00007884237 fastq.gz 361.4 MB
EGAF00007884238 fastq.gz 336.5 MB
EGAF00007884239 fastq.gz 355.8 MB
EGAF00007884240 fastq.gz 340.3 MB
EGAF00007884241 fastq.gz 360.6 MB
EGAF00007884242 fastq.gz 333.9 MB
EGAF00007884243 fastq.gz 353.2 MB
EGAF00007884244 fastq.gz 316.5 MB
EGAF00007884245 fastq.gz 336.6 MB
EGAF00007884246 fastq.gz 309.4 MB
EGAF00007884247 fastq.gz 328.9 MB
EGAF00007884248 fastq.gz 315.1 MB
EGAF00007884249 fastq.gz 335.6 MB
EGAF00007884250 fastq.gz 307.0 MB
EGAF00007884251 fastq.gz 326.6 MB
EGAF00007884252 fq.gz 1.9 GB
EGAF00007884253 fq.gz 2.2 GB
EGAF00007884254 fq.gz 2.9 GB
EGAF00007884255 fq.gz 3.5 GB
EGAF00007884256 fq.gz 2.0 GB
EGAF00007884257 fq.gz 2.4 GB
EGAF00007884258 fq.gz 254.6 MB
EGAF00007884259 fq.gz 275.3 MB
EGAF00007884260 fq.gz 253.3 MB
EGAF00007884261 fq.gz 275.8 MB
EGAF00007884262 fq.gz 257.3 MB
EGAF00007884263 fq.gz 277.9 MB
EGAF00007884264 fq.gz 254.1 MB
EGAF00007884265 fq.gz 277.0 MB
EGAF00007884266 fq.gz 2.5 GB
EGAF00007884267 fq.gz 3.1 GB
EGAF00007884268 fq.gz 2.7 GB
EGAF00007884269 fq.gz 3.3 GB
EGAF00007884270 fq.gz 234.0 MB
EGAF00007884271 fq.gz 249.9 MB
EGAF00007884272 fq.gz 230.7 MB
EGAF00007884273 fq.gz 247.7 MB
EGAF00007884274 fq.gz 236.9 MB
EGAF00007884275 fq.gz 252.5 MB
EGAF00007884276 fq.gz 231.0 MB
EGAF00007884277 fq.gz 248.2 MB
EGAF00007884278 fq.gz 90.3 MB
EGAF00007884279 fq.gz 124.4 MB
EGAF00007884280 fq.gz 74.2 MB
EGAF00007884281 fq.gz 85.3 MB
EGAF00007884282 fq.gz 85.8 MB
EGAF00007884283 fq.gz 124.1 MB
EGAF00007884284 fq.gz 71.5 MB
EGAF00007884285 fq.gz 83.1 MB
EGAF00007884286 fq.gz 128.1 MB
EGAF00007884287 fq.gz 158.8 MB
EGAF00007884288 fq.gz 115.4 MB
EGAF00007884289 fq.gz 128.6 MB
EGAF00007884290 fq.gz 121.6 MB
EGAF00007884291 fq.gz 153.4 MB
EGAF00007884292 fq.gz 111.5 MB
EGAF00007884293 fq.gz 124.7 MB
EGAF00007884294 fq.gz 381.0 MB
EGAF00007884295 fq.gz 457.9 MB
EGAF00007884296 fq.gz 361.7 MB
EGAF00007884297 fq.gz 413.5 MB
EGAF00007884298 fq.gz 371.1 MB
EGAF00007884299 fq.gz 457.4 MB
EGAF00007884300 fq.gz 346.4 MB
EGAF00007884301 fq.gz 395.6 MB
EGAF00007884302 fq.gz 178.5 MB
EGAF00007884303 fq.gz 222.7 MB
EGAF00007884304 fq.gz 162.2 MB
EGAF00007884305 fq.gz 185.2 MB
EGAF00007884306 fq.gz 167.5 MB
EGAF00007884307 fq.gz 212.4 MB
EGAF00007884308 fq.gz 157.2 MB
EGAF00007884309 fq.gz 180.4 MB
EGAF00007884310 fq.gz 268.3 MB
EGAF00007884311 fq.gz 315.2 MB
EGAF00007884312 fq.gz 258.7 MB
EGAF00007884313 fq.gz 290.6 MB
EGAF00007884314 fq.gz 258.9 MB
EGAF00007884315 fq.gz 306.3 MB
EGAF00007884316 fq.gz 253.9 MB
EGAF00007884317 fq.gz 285.1 MB
EGAF00007884318 fq.gz 282.7 MB
EGAF00007884319 fq.gz 332.3 MB
EGAF00007884320 fq.gz 285.1 MB
EGAF00007884321 fq.gz 328.3 MB
EGAF00007884322 fq.gz 278.0 MB
EGAF00007884323 fq.gz 332.5 MB
EGAF00007884324 fq.gz 274.7 MB
EGAF00007884325 fq.gz 315.8 MB
EGAF00007884326 fastq.gz 315.8 MB
EGAF00007884327 fastq.gz 337.4 MB
EGAF00007884328 fastq.gz 310.6 MB
EGAF00007884329 fastq.gz 331.2 MB
EGAF00007884330 fastq.gz 315.2 MB
EGAF00007884331 fastq.gz 337.1 MB
EGAF00007884332 fastq.gz 308.3 MB
EGAF00007884333 fastq.gz 329.0 MB
122 Files (60.4 GB)