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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Platelets contain a repertoire of DNA fragments that map over the human nuclear genome, including tumour-derived DNA in patients with active malignancy.

This dataset consists of WGS from six patients with a recent diagnosis of gastrointestinal adenocarcinoma. DNA-Seq libraries were prepared from platelet DNA (pDNA) and plasma cfDNA obtained from the same peripheral blood sample. pDNA was size selected into 2 groups (small, s-pDNA: less than 600 bp and long, b-pDNA: greater than 600 bp). The short fragments were further cleaned to remove <100 bp fragments and large platelet fragments were fragmented via sonication. Libraries were then prepared using the NEBNext Ultra II DNA Sample Preparation Kit for Illumina according to the manufacturer’s protocol and sequenced on an Illumina NextSeq 500 (300 cycle PE) at low-pass (0.1X) for all samples, and 10X for the cfDNA and s-pDNA, using four lanes in each sample.

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DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000044
version: 2021-02-23

population origins or ancestry research prohibited

This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.

Platelet DNA study Murphy et al 2023 Data Access Agreement

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006854 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007886261 fastq.gz 202.0 MB
EGAF00007886262 fastq.gz 209.8 MB
EGAF00007886263 fastq.gz 190.9 MB
EGAF00007886264 fastq.gz 197.8 MB
EGAF00007886265 fastq.gz 204.2 MB
EGAF00007886266 fastq.gz 211.6 MB
EGAF00007886267 fastq.gz 197.3 MB
EGAF00007886268 fastq.gz 206.0 MB
EGAF00007886269 fastq.gz 193.1 MB
EGAF00007886270 fastq.gz 204.6 MB
EGAF00007886271 fastq.gz 182.5 MB
EGAF00007886272 fastq.gz 192.8 MB
EGAF00007886273 fastq.gz 195.5 MB
EGAF00007886274 fastq.gz 206.9 MB
EGAF00007886275 fastq.gz 188.9 MB
EGAF00007886276 fastq.gz 201.4 MB
EGAF00007886277 fastq.gz 191.7 MB
EGAF00007886278 fastq.gz 198.9 MB
EGAF00007886279 fastq.gz 181.4 MB
EGAF00007886280 fastq.gz 187.8 MB
EGAF00007886281 fastq.gz 194.6 MB
EGAF00007886282 fastq.gz 201.4 MB
EGAF00007886283 fastq.gz 188.4 MB
EGAF00007886284 fastq.gz 196.6 MB
EGAF00007886285 fastq.gz 215.1 MB
EGAF00007886286 fastq.gz 222.2 MB
EGAF00007886287 fastq.gz 203.6 MB
EGAF00007886288 fastq.gz 209.5 MB
EGAF00007886289 fastq.gz 217.9 MB
EGAF00007886290 fastq.gz 224.4 MB
EGAF00007886291 fastq.gz 210.5 MB
EGAF00007886292 fastq.gz 218.3 MB
EGAF00007886293 fastq.gz 212.5 MB
EGAF00007886294 fastq.gz 220.9 MB
EGAF00007886295 fastq.gz 200.7 MB
EGAF00007886296 fastq.gz 208.2 MB
EGAF00007886297 fastq.gz 216.6 MB
EGAF00007886298 fastq.gz 224.8 MB
EGAF00007886299 fastq.gz 208.8 MB
EGAF00007886300 fastq.gz 218.3 MB
EGAF00007886301 fastq.gz 253.0 MB
EGAF00007886302 fastq.gz 262.5 MB
EGAF00007886303 fastq.gz 239.2 MB
EGAF00007886304 fastq.gz 246.9 MB
EGAF00007886305 fastq.gz 255.4 MB
EGAF00007886306 fastq.gz 264.1 MB
EGAF00007886307 fastq.gz 246.8 MB
EGAF00007886308 fastq.gz 257.1 MB
EGAF00007886309 fastq.gz 186.9 MB
EGAF00007886310 fastq.gz 194.1 MB
EGAF00007886311 fastq.gz 177.4 MB
EGAF00007886312 fastq.gz 183.8 MB
EGAF00007886313 fastq.gz 189.6 MB
EGAF00007886314 fastq.gz 196.4 MB
EGAF00007886315 fastq.gz 183.0 MB
EGAF00007886316 fastq.gz 191.1 MB
EGAF00007886317 fastq.gz 188.9 MB
EGAF00007886318 fastq.gz 195.6 MB
EGAF00007886319 fastq.gz 179.3 MB
EGAF00007886320 fastq.gz 184.9 MB
EGAF00007886321 fastq.gz 192.2 MB
EGAF00007886322 fastq.gz 198.5 MB
EGAF00007886323 fastq.gz 185.9 MB
EGAF00007886324 fastq.gz 193.3 MB
EGAF00007886325 fastq.gz 178.8 MB
EGAF00007886326 fastq.gz 183.2 MB
EGAF00007886327 fastq.gz 169.0 MB
EGAF00007886328 fastq.gz 173.0 MB
EGAF00007886329 fastq.gz 181.5 MB
EGAF00007886330 fastq.gz 185.6 MB
EGAF00007886331 fastq.gz 175.4 MB
EGAF00007886332 fastq.gz 180.7 MB
EGAF00007886333 fastq.gz 204.1 MB
EGAF00007886334 fastq.gz 212.6 MB
EGAF00007886335 fastq.gz 192.7 MB
EGAF00007886336 fastq.gz 200.6 MB
EGAF00007886337 fastq.gz 206.9 MB
EGAF00007886338 fastq.gz 215.3 MB
EGAF00007886339 fastq.gz 200.2 MB
EGAF00007886340 fastq.gz 209.9 MB
EGAF00007886341 fastq.gz 3.0 GB
EGAF00007886342 fastq.gz 3.0 GB
EGAF00007886343 fastq.gz 2.9 GB
EGAF00007886344 fastq.gz 3.0 GB
EGAF00007886345 fastq.gz 3.0 GB
EGAF00007886346 fastq.gz 3.1 GB
EGAF00007886347 fastq.gz 2.9 GB
EGAF00007886348 fastq.gz 3.0 GB
EGAF00007886349 fastq.gz 140.3 MB
EGAF00007886350 fastq.gz 143.9 MB
EGAF00007886351 fastq.gz 132.7 MB
EGAF00007886352 fastq.gz 135.9 MB
EGAF00007886353 fastq.gz 142.5 MB
EGAF00007886354 fastq.gz 145.9 MB
EGAF00007886355 fastq.gz 137.6 MB
EGAF00007886356 fastq.gz 142.0 MB
EGAF00007886357 fastq.gz 3.1 GB
EGAF00007886358 fastq.gz 3.1 GB
EGAF00007886359 fastq.gz 3.0 GB
EGAF00007886360 fastq.gz 3.1 GB
EGAF00007886361 fastq.gz 3.1 GB
EGAF00007886362 fastq.gz 3.2 GB
EGAF00007886363 fastq.gz 3.1 GB
EGAF00007886364 fastq.gz 3.1 GB
EGAF00007886365 fastq.gz 199.9 MB
EGAF00007886366 fastq.gz 203.8 MB
EGAF00007886367 fastq.gz 189.8 MB
EGAF00007886368 fastq.gz 193.1 MB
EGAF00007886369 fastq.gz 203.3 MB
EGAF00007886370 fastq.gz 206.8 MB
EGAF00007886371 fastq.gz 196.5 MB
EGAF00007886372 fastq.gz 201.2 MB
EGAF00007886373 fastq.gz 4.2 GB
EGAF00007886374 fastq.gz 4.2 GB
EGAF00007886375 fastq.gz 3.9 GB
EGAF00007886376 fastq.gz 4.0 GB
EGAF00007886377 fastq.gz 4.2 GB
EGAF00007886378 fastq.gz 4.3 GB
EGAF00007886379 fastq.gz 4.0 GB
EGAF00007886380 fastq.gz 4.1 GB
EGAF00007886381 fastq.gz 230.2 MB
EGAF00007886382 fastq.gz 237.7 MB
EGAF00007886383 fastq.gz 217.7 MB
EGAF00007886384 fastq.gz 224.8 MB
EGAF00007886385 fastq.gz 233.8 MB
EGAF00007886386 fastq.gz 241.1 MB
EGAF00007886387 fastq.gz 225.7 MB
EGAF00007886388 fastq.gz 234.7 MB
EGAF00007886389 fastq.gz 2.8 GB
EGAF00007886390 fastq.gz 2.8 GB
EGAF00007886391 fastq.gz 2.6 GB
EGAF00007886392 fastq.gz 2.7 GB
EGAF00007886393 fastq.gz 2.8 GB
EGAF00007886394 fastq.gz 2.9 GB
EGAF00007886395 fastq.gz 2.7 GB
EGAF00007886396 fastq.gz 2.7 GB
EGAF00007886397 fastq.gz 199.1 MB
EGAF00007886398 fastq.gz 204.0 MB
EGAF00007886399 fastq.gz 188.0 MB
EGAF00007886400 fastq.gz 192.3 MB
EGAF00007886401 fastq.gz 201.5 MB
EGAF00007886402 fastq.gz 206.0 MB
EGAF00007886403 fastq.gz 194.3 MB
EGAF00007886404 fastq.gz 200.2 MB
EGAF00007886405 fastq.gz 155.4 MB
EGAF00007886406 fastq.gz 164.6 MB
EGAF00007886407 fastq.gz 147.9 MB
EGAF00007886408 fastq.gz 156.4 MB
EGAF00007886409 fastq.gz 158.0 MB
EGAF00007886410 fastq.gz 167.2 MB
EGAF00007886411 fastq.gz 153.1 MB
EGAF00007886412 fastq.gz 163.3 MB
EGAF00007886413 fastq.gz 179.8 MB
EGAF00007886414 fastq.gz 185.4 MB
EGAF00007886415 fastq.gz 170.5 MB
EGAF00007886416 fastq.gz 175.6 MB
EGAF00007886417 fastq.gz 183.0 MB
EGAF00007886418 fastq.gz 188.3 MB
EGAF00007886419 fastq.gz 177.6 MB
EGAF00007886420 fastq.gz 184.1 MB
EGAF00007886421 fastq.gz 2.7 GB
EGAF00007886422 fastq.gz 2.8 GB
EGAF00007886423 fastq.gz 2.6 GB
EGAF00007886424 fastq.gz 2.7 GB
EGAF00007886425 fastq.gz 2.7 GB
EGAF00007886426 fastq.gz 2.8 GB
EGAF00007886427 fastq.gz 2.6 GB
EGAF00007886428 fastq.gz 2.7 GB
EGAF00007886429 fastq.gz 187.6 MB
EGAF00007886430 fastq.gz 200.7 MB
EGAF00007886431 fastq.gz 177.6 MB
EGAF00007886432 fastq.gz 189.6 MB
EGAF00007886433 fastq.gz 189.8 MB
EGAF00007886434 fastq.gz 202.8 MB
EGAF00007886435 fastq.gz 183.6 MB
EGAF00007886436 fastq.gz 197.7 MB
EGAF00007886437 fastq.gz 2.5 GB
EGAF00007886438 fastq.gz 2.6 GB
EGAF00007886439 fastq.gz 2.4 GB
EGAF00007886440 fastq.gz 2.5 GB
EGAF00007886441 fastq.gz 2.5 GB
EGAF00007886442 fastq.gz 2.6 GB
EGAF00007886443 fastq.gz 2.5 GB
EGAF00007886444 fastq.gz 2.6 GB
EGAF00007886445 fastq.gz 193.9 MB
EGAF00007886446 fastq.gz 204.1 MB
EGAF00007886447 fastq.gz 184.9 MB
EGAF00007886448 fastq.gz 194.8 MB
EGAF00007886449 fastq.gz 197.4 MB
EGAF00007886450 fastq.gz 207.7 MB
EGAF00007886451 fastq.gz 191.6 MB
EGAF00007886452 fastq.gz 203.4 MB
EGAF00007886453 fastq.gz 3.0 GB
EGAF00007886454 fastq.gz 3.0 GB
EGAF00007886455 fastq.gz 2.8 GB
EGAF00007886456 fastq.gz 2.9 GB
EGAF00007886457 fastq.gz 3.0 GB
EGAF00007886458 fastq.gz 3.1 GB
EGAF00007886459 fastq.gz 2.9 GB
EGAF00007886460 fastq.gz 2.9 GB
EGAF00007886461 fastq.gz 160.5 MB
EGAF00007886462 fastq.gz 166.3 MB
EGAF00007886463 fastq.gz 152.1 MB
EGAF00007886464 fastq.gz 157.5 MB
EGAF00007886465 fastq.gz 163.3 MB
EGAF00007886466 fastq.gz 168.9 MB
EGAF00007886467 fastq.gz 158.4 MB
EGAF00007886468 fastq.gz 165.1 MB
EGAF00007886469 fastq.gz 3.3 GB
EGAF00007886470 fastq.gz 3.4 GB
EGAF00007886471 fastq.gz 3.2 GB
EGAF00007886472 fastq.gz 3.3 GB
EGAF00007886473 fastq.gz 3.4 GB
EGAF00007886474 fastq.gz 3.5 GB
EGAF00007886475 fastq.gz 3.2 GB
EGAF00007886476 fastq.gz 3.3 GB
EGAF00007886477 fastq.gz 168.3 MB
EGAF00007886478 fastq.gz 173.9 MB
EGAF00007886479 fastq.gz 159.7 MB
EGAF00007886480 fastq.gz 164.8 MB
EGAF00007886481 fastq.gz 171.1 MB
EGAF00007886482 fastq.gz 176.5 MB
EGAF00007886483 fastq.gz 165.7 MB
EGAF00007886484 fastq.gz 172.4 MB
224 Files (226.3 GB)