About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Gut microbiome from melanoma patients

Metagenomics shotgun sequencing was conducted on fecal samples from the Australian patients enrolled in the OpACIN-neo clinical trial (n = 38). Metagenomic shotgun sequencing was performed utilizing the same DNA from the same preparations as for the 16S rRNA gene analysis. Individual libraries were prepared using Nextera XT, and sequencing was performed on the Illumina NovaSeq 6000 S1 (2 x 150bp; Xp workflow).

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The data sets were collected under the Melanoma Institute Australia Biospecimen Bank for Melanoma Research Protocol, Melanoma Research Database Protocol and Melanoma Institute Australia Molecular Pathology, Genomics and Clinical Outcomes Of Melanoma And Related Skin Tumor Protocol.

Samples were collected under the Melanoma Institute Australia Biospecimen Bank for Melanoma Research Protocol (X15-0454, HREC/11/RPAH/444), and clinical data were collected under the Melanoma Institute Australia: Melanoma Research Database Protocol (X15-0311, HREC/10/RPAH/530). Analysis was conducted under the Melanoma Institute Australia Molecular Pathology, Genomics and Clinical Outcomes Of Melanoma And Related Skin Tumor Protocol (X17-0312, HREC/11/RPAH/32)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006982 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007916846 fastq.gz 1.3 GB Report
EGAF00007916847 fastq.gz 1.4 GB Report
EGAF00007916848 fastq.gz 913.9 MB
EGAF00007916849 fastq.gz 991.2 MB
EGAF00007916850 fastq.gz 1.8 GB
EGAF00007916851 fastq.gz 1.9 GB Report
EGAF00007916852 fastq.gz 1.7 GB
EGAF00007916853 fastq.gz 1.8 GB Report
EGAF00007916854 fastq.gz 1.6 GB Report
EGAF00007916855 fastq.gz 1.6 GB Report
EGAF00007916856 fastq.gz 417.5 MB Report
EGAF00007916857 fastq.gz 433.1 MB Report
EGAF00007916858 fastq.gz 1.1 GB
EGAF00007916859 fastq.gz 1.1 GB
EGAF00007916860 fastq.gz 2.8 GB
EGAF00007916861 fastq.gz 2.9 GB Report
EGAF00007916862 fastq.gz 1.3 GB Report
EGAF00007916863 fastq.gz 1.3 GB Report
EGAF00007916864 fastq.gz 2.0 GB Report
EGAF00007916865 fastq.gz 2.0 GB Report
EGAF00007916866 fastq.gz 2.2 GB Report
EGAF00007916867 fastq.gz 2.1 GB Report
EGAF00007916868 fastq.gz 2.3 GB
EGAF00007916869 fastq.gz 2.4 GB Report
EGAF00007916870 fastq.gz 2.0 GB Report
EGAF00007916871 fastq.gz 2.1 GB Report
EGAF00007916872 fastq.gz 1.9 GB Report
EGAF00007916873 fastq.gz 1.9 GB Report
EGAF00007916874 fastq.gz 1.6 GB
EGAF00007916875 fastq.gz 1.6 GB Report
EGAF00007916876 fastq.gz 1.7 GB Report
EGAF00007916877 fastq.gz 1.6 GB Report
EGAF00007916878 fastq.gz 1.6 GB
EGAF00007916879 fastq.gz 1.6 GB Report
EGAF00007916880 fastq.gz 1.9 GB Report
EGAF00007916881 fastq.gz 1.9 GB Report
EGAF00007916882 fastq.gz 1.5 GB Report
EGAF00007916883 fastq.gz 1.5 GB
EGAF00007916884 fastq.gz 1.4 GB Report
EGAF00007916885 fastq.gz 1.4 GB Report
EGAF00007916886 fastq.gz 1.6 GB
EGAF00007916887 fastq.gz 1.6 GB Report
EGAF00007916888 fastq.gz 2.2 GB Report
EGAF00007916889 fastq.gz 2.1 GB Report
EGAF00007916890 fastq.gz 1.5 GB Report
EGAF00007916891 fastq.gz 1.5 GB Report
EGAF00007916892 fastq.gz 1.4 GB Report
EGAF00007916893 fastq.gz 1.3 GB
EGAF00007916894 fastq.gz 1.7 GB
EGAF00007916895 fastq.gz 1.7 GB Report
EGAF00007916896 fastq.gz 1.8 GB Report
EGAF00007916897 fastq.gz 1.9 GB Report
EGAF00007916898 fastq.gz 2.6 GB Report
EGAF00007916899 fastq.gz 2.7 GB Report
EGAF00007916900 fastq.gz 2.2 GB Report
EGAF00007916901 fastq.gz 2.3 GB Report
EGAF00007916902 fastq.gz 2.3 GB Report
EGAF00007916903 fastq.gz 2.3 GB Report
EGAF00007916904 fastq.gz 2.1 GB Report
EGAF00007916905 fastq.gz 2.1 GB Report
EGAF00007916906 fastq.gz 1.9 GB Report
EGAF00007916907 fastq.gz 1.9 GB Report
EGAF00007916908 fastq.gz 2.2 GB
EGAF00007916909 fastq.gz 2.3 GB Report
EGAF00007916910 fastq.gz 2.1 GB Report
EGAF00007916911 fastq.gz 2.1 GB Report
EGAF00007916912 fastq.gz 2.4 GB Report
EGAF00007916913 fastq.gz 2.5 GB Report
EGAF00007916914 fastq.gz 2.2 GB Report
EGAF00007916915 fastq.gz 2.2 GB Report
EGAF00007916916 fastq.gz 2.0 GB Report
EGAF00007916917 fastq.gz 2.0 GB Report
EGAF00007916918 fastq.gz 2.2 GB Report
EGAF00007916919 fastq.gz 2.1 GB Report
EGAF00007916920 fastq.gz 1.4 GB Report
EGAF00007916921 fastq.gz 1.4 GB Report
76 Files (138.7 GB)