RNA-seq analysis of CCO+/CCO- hepatocytes in normal human liver
RNAseq data from Passman et al 2023. Clonal CCO-deficient hepatocyte patches and nearby CCO-proficient hepatocytes were identified in morphologically normal human livers and sampled at varying distances along the PT-CV axis. Samples are characterised according to their location within the liver lobule, with "PT" denoting samples abutting the portal triad, "CV" denoting samples abutting the central hepatic vein, and "Mid" sampled acquired midway between these structures. Analysis was performed on an Illumina Nextseq using a high output kit and 100 single-end cycles.
- 07/02/2023
- 114 samples
- DAC: EGAC00001003083
- Technology: NextSeq 500
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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001006984 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00007917827 | bam | 160.4 MB | Report |
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| EGAF00007917828 | bam | 105.0 MB | Report |
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| EGAF00007917829 | bam | 94.8 MB | Report |
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| EGAF00007917830 | bam | 83.7 MB | Report |
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| EGAF00007917831 | bam | 82.5 MB | Report |
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| EGAF00007917832 | bam | 121.1 MB | Report |
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| EGAF00007917833 | bam | 103.0 MB | Report |
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| EGAF00007917834 | bam | 89.0 MB | Report |
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| EGAF00007917835 | bam | 149.5 MB | Report |
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| EGAF00007917836 | bam | 111.1 MB | Report |
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| EGAF00007917837 | bam | 44.7 MB | Report |
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| EGAF00007917838 | bam | 93.4 MB | Report |
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| EGAF00007917839 | bam | 92.6 MB | Report |
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| EGAF00007917840 | bam | 94.9 MB | Report |
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| EGAF00007917841 | bam | 94.2 MB | Report |
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| EGAF00007917842 | bam | 128.2 MB | Report |
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| EGAF00007917843 | bam | 62.5 MB | Report |
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| EGAF00007917844 | bam | 57.0 MB | Report |
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| EGAF00007917845 | bam | 53.6 MB | Report |
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| EGAF00007917846 | bam | 17.1 MB | Report |
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| EGAF00007917847 | bam | 101.9 MB | Report |
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| EGAF00007917848 | bam | 64.3 MB | Report |
|
| EGAF00007917849 | bam | 49.8 MB | Report |
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| EGAF00007917850 | bam | 42.9 MB | Report |
|
| EGAF00007917851 | bam | 67.6 MB | Report |
|
| EGAF00007917852 | bam | 103.2 MB | Report |
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| EGAF00007917853 | bam | 107.7 MB | Report |
|
| EGAF00007917854 | bam | 54.4 MB | Report |
|
| EGAF00007917855 | bam | 47.9 MB | Report |
|
| EGAF00007917856 | bam | 87.3 MB | Report |
|
| EGAF00007917857 | bam | 54.5 MB | Report |
|
| EGAF00007917858 | bam | 76.7 MB | Report |
|
| EGAF00007917859 | bam | 75.4 MB | Report |
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| EGAF00007917860 | bam | 74.3 MB | Report |
|
| EGAF00007917861 | bam | 74.0 MB | Report |
|
| EGAF00007917862 | bam | 117.4 MB | Report |
|
| EGAF00007917863 | bam | 59.9 MB | Report |
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| EGAF00007917864 | bam | 88.7 MB | Report |
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| EGAF00007917865 | bam | 94.2 MB | Report |
|
| EGAF00007917866 | bam | 82.3 MB | Report |
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| EGAF00007917867 | bam | 82.8 MB | Report |
|
| EGAF00007917868 | bam | 85.3 MB | Report |
|
| EGAF00007917869 | bam | 172.9 MB | Report |
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| EGAF00007917870 | bam | 59.5 MB | Report |
|
| EGAF00007917871 | bam | 199.9 MB | Report |
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| EGAF00007917872 | bam | 65.6 MB | Report |
|
| EGAF00007917873 | bam | 140.5 MB | Report |
|
| EGAF00007917874 | bam | 60.7 MB | Report |
|
| EGAF00007917875 | bam | 105.2 MB | Report |
|
| EGAF00007917876 | bam | 65.9 MB | Report |
|
| EGAF00007917877 | bam | 163.4 MB | Report |
|
| EGAF00007917878 | bam | 197.5 MB | Report |
|
| EGAF00007917879 | bam | 175.8 MB | Report |
|
| EGAF00007917880 | bam | 99.9 MB | Report |
|
| EGAF00007917881 | bam | 201.8 MB | Report |
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| EGAF00007917882 | bam | 90.2 MB | Report |
|
| EGAF00007917883 | bam | 192.1 MB | Report |
|
| EGAF00007917884 | bam | 35.3 MB | Report |
|
| EGAF00007917885 | bam | 38.8 MB | Report |
|
| EGAF00007917886 | bam | 453.2 MB | Report |
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| EGAF00007917887 | bam | 84.9 MB | Report |
|
| EGAF00007917888 | bam | 106.0 MB | Report |
|
| EGAF00007917889 | bam | 121.2 MB | Report |
|
| EGAF00007917890 | bam | 214.9 MB | Report |
|
| EGAF00007917891 | bam | 97.0 MB | Report |
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| EGAF00007917892 | bam | 178.3 MB | Report |
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| EGAF00007917893 | bam | 48.1 MB | Report |
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| EGAF00007917894 | bam | 54.4 MB | Report |
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| EGAF00007917895 | bam | 73.6 MB | Report |
|
| EGAF00007917896 | bam | 58.4 MB | Report |
|
| EGAF00007917897 | bam | 87.7 MB | Report |
|
| EGAF00007917898 | bam | 51.4 MB | Report |
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| EGAF00007917899 | bam | 109.9 MB | Report |
|
| EGAF00007917900 | bam | 73.3 MB | Report |
|
| EGAF00007917901 | bam | 60.3 MB | Report |
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| EGAF00007917902 | bam | 62.0 MB | Report |
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| EGAF00007917903 | bam | 54.9 MB | Report |
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| EGAF00007917904 | bam | 37.2 MB | Report |
|
| EGAF00007917905 | bam | 67.9 MB | Report |
|
| EGAF00007917906 | bam | 40.0 MB | Report |
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| EGAF00007917907 | bam | 41.0 MB | Report |
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| EGAF00007917908 | bam | 34.0 MB | Report |
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| EGAF00007917909 | bam | 57.8 MB | Report |
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| EGAF00007917910 | bam | 26.2 MB | Report |
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| EGAF00007917911 | bam | 43.9 MB | Report |
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| EGAF00007917912 | bam | 30.3 MB | Report |
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| EGAF00007917913 | bam | 44.4 MB | Report |
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| EGAF00007917914 | bam | 34.5 MB | Report |
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| EGAF00007917915 | bam | 47.1 MB | Report |
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| EGAF00007917916 | bam | 55.2 MB | Report |
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| EGAF00007917917 | bam | 42.2 MB | Report |
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| EGAF00007917918 | bam | 165.3 MB | Report |
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| EGAF00007917919 | bam | 95.5 MB | Report |
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| EGAF00007917920 | bam | 201.1 MB | Report |
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| EGAF00007917921 | bam | 122.6 MB | Report |
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| EGAF00007917922 | bam | 177.0 MB | Report |
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| EGAF00007917923 | bam | 75.8 MB | Report |
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| EGAF00007917924 | bam | 82.7 MB | Report |
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| EGAF00007917925 | bam | 153.6 MB | Report |
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| EGAF00007917926 | bam | 87.1 MB | Report |
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| EGAF00007917927 | bam | 136.3 MB | Report |
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| EGAF00007917928 | bam | 66.8 MB | Report |
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| EGAF00007917929 | bam | 46.3 MB | Report |
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| EGAF00007917930 | bam | 63.1 MB | Report |
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| EGAF00007917931 | bam | 60.0 MB | Report |
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| EGAF00007917932 | bam | 86.3 MB | Report |
|
| EGAF00007917933 | bam | 78.2 MB | Report |
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| EGAF00007917934 | bam | 55.3 MB | Report |
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| EGAF00007917935 | bam | 57.9 MB | Report |
|
| EGAF00007917936 | bam | 66.5 MB | Report |
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| EGAF00007917937 | bam | 50.0 MB | Report |
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| EGAF00007917938 | bam | 73.7 MB | Report |
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| EGAF00007917939 | bam | 45.7 MB | Report |
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| EGAF00007917940 | bam | 44.5 MB | Report |
|
| 114 Files (10.3 GB) | ||||