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WGS of peripheral blood leukocytes from patients with Li-Fraumeni syndrome

We performed whole genome sequencing on 84 LFS family members from 47 families: 22 with wildtype TP53 and 62 with variant TP53. The variant TP53 cohort consists of 49 individuals who developed cancer and 13 individuals who remain cancer-free; 34 were from 13 families with 2-4 individuals sequenced within a given family and the remaining 28 had no family members sequenced. The wildtype cohort consists of 14 individuals who developed cancer and 8 individuals who are cancer-free, from 6 families.

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LFS Data Access Policy: Data access will be limited to approved study personnel and collaborators who are given permission to access specific samples or data. Ethically, all study personnel will be approved by the SickKids REB to work on the study.

Access to data will only be granted for studies that have received external scientific peer-reviewed funding, as a measure of scientific merit, technical feasibility, statistical power, and available resources. The release of samples/data to investigators outside of Sickkids will require a material transfer agreement and ethics board approval. Submission of a written request for access to data; detailed explanation and rationale for the type and quantity of material needed, and plans for proposed disposition of any excess materials are requested (return of excess materials or destruction by 7 years after completion of the study). PHIPA compliance or stricter, regardless of jurisdiction will apply to all data. In the event of research findings and other study data being requested by the courts or being placed in a Federal or public data repository, any information that could identify the participant will be removed and the information will be labeled with a new number that is different from the study number and cannot be linked back

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007061 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007975165 bam 180.5 GB
EGAF00007975166 bam 167.0 GB
EGAF00007975167 bam 157.3 GB
EGAF00007975168 bam 183.5 GB
EGAF00007975169 bam 185.3 GB
EGAF00007975170 bam 165.3 GB
EGAF00007975171 bam 184.4 GB
EGAF00007975172 bam 156.2 GB
EGAF00007975173 bam 160.0 GB
EGAF00007975174 bam 179.3 GB
EGAF00007975176 bam 197.4 GB
EGAF00007975177 bam 170.5 GB
EGAF00007975178 bam 178.1 GB
EGAF00007975179 bam 171.7 GB
EGAF00007975180 bam 177.2 GB
EGAF00007975181 bam 167.7 GB
EGAF00007975182 bam 164.2 GB
EGAF00007975183 bam 169.5 GB
EGAF00007975184 bam 168.8 GB
EGAF00007975185 bam 165.5 GB
EGAF00007975186 bam 174.5 GB
EGAF00007975187 bam 170.0 GB
EGAF00007975188 bam 193.5 GB
EGAF00007975189 bam 206.0 GB
EGAF00007975190 bam 176.1 GB
EGAF00007975191 bam 175.1 GB
EGAF00007975192 bam 180.3 GB
EGAF00007975193 bam 184.1 GB
EGAF00007975194 bam 180.4 GB
EGAF00007975195 bam 180.1 GB
EGAF00007975196 bam 171.6 GB
EGAF00007975197 bam 167.1 GB
EGAF00007975198 bam 174.0 GB
EGAF00007975199 bam 186.2 GB
EGAF00007975200 bam 184.0 GB
EGAF00007975201 bam 166.0 GB
EGAF00007975202 bam 185.3 GB
EGAF00007975203 bam 151.2 GB
EGAF00007975204 bam 168.4 GB
EGAF00007975205 bam 169.7 GB
EGAF00007975206 bam 167.8 GB
EGAF00007975207 bam 162.8 GB
EGAF00007975208 bam 197.2 GB
EGAF00007975209 bam 163.0 GB
EGAF00007975210 bam 156.6 GB
EGAF00007975211 bam 172.9 GB
EGAF00007975212 bam 178.7 GB
EGAF00007975213 bam 164.9 GB
EGAF00007975214 bam 173.2 GB
EGAF00007975215 bam 188.6 GB
EGAF00007975216 bam 156.3 GB
EGAF00007975217 bam 167.0 GB
EGAF00007975218 bam 152.9 GB
EGAF00007975219 bam 172.2 GB
EGAF00007975220 bam 144.8 GB
EGAF00007975221 bam 183.8 GB
EGAF00007975222 bam 156.3 GB
EGAF00007975223 bam 159.9 GB
EGAF00007975224 bam 201.8 GB
EGAF00007975225 bam 169.2 GB
EGAF00007975226 bam 162.5 GB
EGAF00007975227 bam 168.3 GB
EGAF00007975228 bam 174.0 GB
EGAF00007975229 bam 212.3 GB
EGAF00007975230 bam 119.9 GB
EGAF00007975231 bam 174.1 GB
EGAF00007975232 bam 168.6 GB
EGAF00007975233 bam 155.5 GB
EGAF00007975234 bam 141.6 GB
EGAF00007975235 bam 148.0 GB
EGAF00007978327 bam 172.1 GB
EGAF00007978328 bam 198.9 GB
EGAF00007978329 bam 167.8 GB
EGAF00007978330 bam 182.5 GB
EGAF00007978331 bam 172.5 GB
EGAF00007978332 bam 175.8 GB
EGAF00007978333 bam 162.9 GB
EGAF00007978334 bam 159.6 GB
EGAF00007978335 bam 158.4 GB
79 Files (13.6 TB)