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LBC1921 bam files

297 members of the LBC1921 were sequenced using the Illumina HiSeq X platform. This dataset contains the bam files.

Request Access

DUO:0000006
version: 2019-01-07

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000014
version: 2019-01-07

research use only

This data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).

DUO:0000019
version: 2019-01-07

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000025
version: 2019-01-07

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000026
version: 2019-01-07

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2019-01-07

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2019-01-07

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000029
version: 2019-01-07

return to database or resource

This data use modifier indicates that the requestor must return derived/enriched data to the database/resource.

Data access agreement for accessing the Lothian Birth Cohorts genetic and phenotypic data.

DATA ACCESS AGREEMENT Transfer of Data THIS AGREEMENT SETS OUT THE TERMS AND CONDITIONS ON WHICH ACCESS WILL BE GRANTED TO THE DATA SPECIFIED BELOW. BY SIGNING THIS AGREEMENT YOU AGREE TO BE BOUND BY THESE TERMS AND CONDITIONS 1. Defined Terms For the purpose of this Agreement, the following terms shall be understood to mean: “Agreement” this Data Access Agreement. “Confidential Information” any information of a confidential nature disclosed by Edinburgh to You in whatever form (whether written, oral, visual or electronic). “Data” [INSERT DESCRIPTION OF DATA]… all of which forms part of the Database. A full list of data items is appended with a Data Request Form. ] “Database” the Lothian Birth Cohort 1936 and the Lothian Birth Cohort 1921 Study Databases. “Derived Data” the data, datasets, algorithms and /or derived variables used therein which may be derived from the use or analysis of the Data by You in carrying out the Project. “Edinburgh” The University Court Of The University Of Edinburgh, a charitable body registered in Scotland under registration number SC005336, incorporated under the Universities (Scotland) Acts and having its main administrative offices at Old College, South Bridge Edinburgh, EH8 9YL. “Edinburgh Scientist” Dr Simon Cox, Director of the Lothian Birth Cohorts, Department of Psychology, University of Edinburgh, 7 George Square Edinburgh, EH8 9JZ. “Intellectual Property” means (i) patents, designs, trade marks and trade names (whether registered or unregistered), copyright and related rights, database rights, know-how and confidential information; (ii) all other intellectual property rights and similar or equivalent rights anywhere in the world which currently exist or are recognised in the future; and (iii) applications, extensions and renewals in relation to such rights. “Project” the project entitled “TBC”. “Recipient Institution” TBC “Recipient Scientist(s)” TBC “Term” TBC years “You” the Recipient Institution and/or the Recipient Scientist. 2. Use of the Data 2.1 You acknowledge and agree that only the Recipient Scientist(s) is/are permitted to have access to and to use the Data. The Recipient Scientist(s) will access and use the Data solely for the purpose of carrying out the Project and will not access or use the Data for any other purpose without prior written consent from Edinburgh. Recipient Institution shall in any event procure acceptance of the terms of this Agreement by all persons who have access to the Data. 2.2 You will comply with all security and operating requirements notified to you by Edinburgh and will use the Data in accordance with all applicable laws, regulations and research governance. 2.3 You undertake to make no attempt to link the Data to any other datasets whatsoever (including, without limitation, any external datasets or any datasets from the same patient cohort) held by different recipients or by You for different projects, without prior written consent from Edinburgh, or to use the Data to identify the Data subjects. 2.4 You will not use the Data for any commercial purpose or any purpose that is subject to consulting or licensing obligations to third parties without prior written consent from Edinburgh. 3. Ownership of Data, Derived Data and Intellectual Property 3.1 The Data and all intellectual property rights therein will remain the property of Edinburgh at all times and no right, title or interest in or to the Data is granted to You other than as expressly set out in this Agreement. 3.2 The Derived Data and all intellectual property rights therein will be owned by Edinburgh. Edinburgh agrees to provide You with a copy of the Derived Data and hereby grants to You a non-exclusive, royalty-free perpetual licence to use the Derived Data for health research purposes. 3.3 You shall have the right to develop Intellectual Property based on comparisons with your own data. 4. Confidentiality 4.1 You shall keep confidential the Data and any Confidential Information for so long as such Data and/or Confidential Information remain confidential in nature, notwithstanding termination or expiry of this Agreement. 4.2 The obligation in Clause 4.1 shall not apply where You can prove that the Data and/or Confidential Information: (a) has become public knowledge, other than through an unauthorised disclosure by You; (b) was already known to You prior to disclosure by Edinburgh or was independently developed by You without use of or recourse to the Data and/or Confidential Information; (c) was disclosed to You by a third party not under any obligation of confidence to Edinburgh; or (d) is required to be disclosed by law or by requirement of a regulatory body or court order. 5. Collaboration and Publications You agree to use reasonable endeavours to collaborate with Edinburgh with regard to Your analysis of the Data, with a view to publishing the results arising from Your analysis of the Data, jointly with Edinburgh. In any event, you agree that any publications made by You of results arising from Your analysis of the Data will be produced in accordance with normal academic practice including (without limitation) appropriate acknowledgement of co-authors, any published paper from which the Data derives, the version of the Data used, the role of Edinburgh, the relevant primary collectors of the Data and their funders. 6. DISCLAIMERS 6.1 YOU ACKNOWLEDGE AND AGREE THAT ACCESS TO, AND USE OF, THE DATA AND DERIVED DATA IS PROVIDED BY EDINBURGH ON AN “AS IS” BASIS. EDINBURGH GIVES NO WARRANTY, EXPRESS OR IMPLIED, THAT:- (a) THE DATA AND DERIVED DATA IS ACCURATE OR COMPLETE; (b) THE DATA AND DERIVED DATA IS FIT FOR ANY PARTICULAR PURPOSE; (c) YOUR USE OF THE DATA AND DERIVED DATA WILL NOT INFRINGE ANY THIRD PARTY INTELLECTUAL PROPERTY OR OTHER RIGHTS. 6.2 EACH PARTY AGREES THAT NEITHER PARTY SHALL BE LIABLE FOR ANY INDIRECT OR CONSEQUENTIAL DAMAGES INCURRED BY THE OTHER PARTY UNDER OR IN CONNECTION WITH THIS AGREEMENT HOWSOEVER CAUSED. 6.3 Nothing in this Agreement excludes, restricts or otherwise limits either party’s liability for any death or personal injury arising from its negligence or for any loss suffered by the other party as a result of it’s fraud. 7. Term and Termination of Access 7.1 You agree that You will access the Data during the Term only. You accept and agree that: (a) Edinburgh may terminate Your access to the Data forthwith upon any breach of this Agreement by You; and (b) Edinburgh may terminate Your access to the Data upon giving You one month’s written notice. 7.2 On termination or expiry of this Agreement You shall immediately destroy all tangible copies of the Data in Your possession and (to the extent possible to do so) delete all copies of the Data from Your computer systems and confirm in writing to Edinburgh that this has been done. 7.3 You acknowledge and agree that the provisions of this Agreement will continue in full force and effect following expiry of the Term or termination of Your access to the Data by Edinburgh pursuant to Clause 7.1. 8. Additional Data 8.1 If agreed in written with the Edinburgh Scientist, additional data items may be supplied to the Recipient Institution to facilitate the analysis as part of the Project, on the same terms as are contained in this Agreement. 9. Applicable law and jurisdiction You agree that Scots law shall govern this Agreement and the Scottish courts shall have exclusive jurisdiction over any matter relating to it. Edinburgh hereby accepts the foregoing terms and conditions: For and on behalf of Edinburgh: Signed: Date: Name: Title: The Recipient Institution hereby accepts the foregoing terms and conditions: For and on behalf of the Recipient Institution: Signed: Date: Name: Title: As the Recipient Scientist, I acknowledge receipt of a copy of this Agreement and confirm that I will abide by its terms insofar as those terms are applicable to me: Signed: Date: Name: LBC1921/36 Data request form Provisional title of study Principal researcher (include institution address, email & phone) Provisional author list Brief rationale for study Main variables to be analysed (variable names from data dictionary) Which journal(s) are you considering?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003818 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00006260160 bam 179.2 GB
EGAF00006260161 bam 200.2 GB
EGAF00006260162 bam 213.6 GB
EGAF00006260163 bam 231.1 GB
EGAF00006260164 bam 207.1 GB
EGAF00006260165 bam 193.9 GB
EGAF00006260166 bam 190.8 GB
EGAF00006260167 bam 189.9 GB
EGAF00006260168 bam 193.0 GB
EGAF00006260169 bam 188.8 GB
EGAF00006260170 bam 208.0 GB
EGAF00006260171 bam 190.7 GB
EGAF00006260172 bam 189.8 GB
EGAF00006260173 bam 211.2 GB
EGAF00006260174 bam 159.3 GB
EGAF00006260175 bam 207.4 GB
EGAF00006260176 bam 201.4 GB
EGAF00006260177 bam 214.4 GB
EGAF00006260178 bam 174.3 GB
EGAF00006260179 bam 199.2 GB
EGAF00006260180 bam 230.2 GB
EGAF00006260181 bam 218.9 GB
EGAF00006260182 bam 190.9 GB
EGAF00006260183 bam 203.3 GB
EGAF00006260184 bam 203.2 GB
EGAF00006260185 bam 203.2 GB
EGAF00006260186 bam 190.2 GB
EGAF00006260187 bam 188.5 GB
EGAF00006260188 bam 200.3 GB
EGAF00006260189 bam 202.6 GB
EGAF00006260190 bam 206.9 GB
EGAF00006260191 bam 182.9 GB
EGAF00006260192 bam 199.5 GB
EGAF00006260193 bam 190.7 GB
EGAF00006260194 bam 176.4 GB
EGAF00006260195 bam 173.0 GB
EGAF00006260196 bam 221.1 GB
EGAF00006260197 bam 218.6 GB
EGAF00006260198 bam 191.1 GB
EGAF00006260199 bam 190.6 GB
EGAF00006260200 bam 220.3 GB
EGAF00006260201 bam 211.8 GB
EGAF00006260202 bam 196.3 GB
EGAF00006260203 bam 212.0 GB
EGAF00006260204 bam 191.8 GB
EGAF00006260205 bam 194.6 GB
EGAF00006260206 bam 209.6 GB
EGAF00006260207 bam 242.4 GB
EGAF00006260208 bam 189.7 GB
EGAF00006260209 bam 222.4 GB
EGAF00006865926 bam 214.9 GB
EGAF00006865927 bam 191.1 GB
EGAF00006865928 bam 191.5 GB
EGAF00006865929 bam 216.8 GB
EGAF00006865930 bam 219.0 GB
EGAF00006865931 bam 198.6 GB
EGAF00006865932 bam 206.0 GB
EGAF00006865933 bam 199.8 GB
EGAF00006865934 bam 215.5 GB
EGAF00006865935 bam 204.3 GB
EGAF00006865936 bam 198.3 GB
EGAF00006865937 bam 222.8 GB
EGAF00006865938 bam 218.5 GB
EGAF00006865939 bam 164.3 GB
EGAF00006865940 bam 187.9 GB
EGAF00006865941 bam 198.6 GB
EGAF00006865942 bam 205.7 GB
EGAF00006865943 bam 186.8 GB
EGAF00006865944 bam 199.8 GB
EGAF00006865945 bam 200.3 GB
EGAF00006865946 bam 193.2 GB
EGAF00006865947 bam 215.4 GB
EGAF00006865948 bam 209.6 GB
EGAF00006865949 bam 189.6 GB
EGAF00006865950 bam 191.5 GB
EGAF00006865951 bam 167.9 GB
EGAF00006865952 bam 195.4 GB
EGAF00006865953 bam 198.4 GB
EGAF00006865954 bam 194.1 GB
EGAF00006865955 bam 217.9 GB
EGAF00006865956 bam 190.5 GB
EGAF00006865957 bam 194.7 GB
EGAF00006865958 bam 206.7 GB
EGAF00006865959 bam 212.5 GB
EGAF00006865960 bam 203.4 GB
EGAF00006865961 bam 214.4 GB
EGAF00006865962 bam 191.5 GB
EGAF00006865963 bam 199.3 GB
EGAF00006865964 bam 207.6 GB
EGAF00006865965 bam 175.7 GB
EGAF00006865966 bam 193.5 GB
EGAF00006865967 bam 205.0 GB
EGAF00006865968 bam 219.6 GB
EGAF00006865969 bam 202.2 GB
EGAF00006865970 bam 213.7 GB
EGAF00006865971 bam 191.4 GB
EGAF00006865972 bam 192.3 GB
EGAF00006865973 bam 214.5 GB
EGAF00006865974 bam 197.6 GB
EGAF00006865975 bam 177.4 GB
EGAF00007132523 bam 201.7 GB
EGAF00007132524 bam 199.2 GB
EGAF00007132525 bam 222.0 GB
EGAF00007132526 bam 195.6 GB
EGAF00007132527 bam 188.9 GB
EGAF00007132528 bam 209.0 GB
EGAF00007132529 bam 189.4 GB
EGAF00007132530 bam 199.1 GB
EGAF00007132531 bam 207.6 GB
EGAF00007132532 bam 198.2 GB
EGAF00007132533 bam 196.6 GB
EGAF00007132534 bam 198.3 GB
EGAF00007132535 bam 206.7 GB
EGAF00007132536 bam 192.3 GB
EGAF00007132537 bam 206.4 GB
EGAF00007132538 bam 210.5 GB
EGAF00007132539 bam 221.6 GB
EGAF00007132540 bam 196.2 GB
EGAF00007132541 bam 184.9 GB
EGAF00007132542 bam 205.0 GB
EGAF00007132543 bam 213.6 GB
EGAF00007132544 bam 212.7 GB
EGAF00007132545 bam 209.3 GB
EGAF00007132546 bam 195.6 GB
EGAF00007132547 bam 192.8 GB
EGAF00007132548 bam 190.5 GB
EGAF00007132549 bam 208.0 GB
EGAF00007132550 bam 210.1 GB
EGAF00007132551 bam 191.2 GB
EGAF00007132552 bam 197.5 GB
EGAF00007132553 bam 180.5 GB
EGAF00007132554 bam 204.0 GB
EGAF00007132555 bam 210.6 GB
EGAF00007132556 bam 168.6 GB
EGAF00007132557 bam 191.0 GB
EGAF00007132558 bam 188.6 GB
EGAF00007132559 bam 194.7 GB
EGAF00007132560 bam 178.2 GB
EGAF00007132561 bam 202.3 GB
EGAF00007132562 bam 189.9 GB
EGAF00007132563 bam 200.1 GB
EGAF00007132564 bam 195.5 GB
EGAF00007132565 bam 202.8 GB
EGAF00007132566 bam 211.4 GB
EGAF00007132567 bam 201.5 GB
EGAF00007132568 bam 198.5 GB
EGAF00007132569 bam 200.6 GB
EGAF00007132570 bam 207.3 GB
EGAF00007132571 bam 193.3 GB
EGAF00007132572 bam 208.2 GB
EGAF00007917782 bam 178.9 GB
EGAF00007917783 bam 217.0 GB
EGAF00007917784 bam 183.9 GB
EGAF00007917785 bam 189.8 GB
EGAF00007917786 bam 200.8 GB
EGAF00007917787 bam 193.4 GB
EGAF00007917788 bam 190.7 GB
EGAF00007917789 bam 215.8 GB
EGAF00007917790 bam 201.3 GB
EGAF00007917791 bam 190.6 GB
EGAF00007917792 bam 217.8 GB
EGAF00007917793 bam 196.6 GB
EGAF00007917794 bam 192.3 GB
EGAF00007917795 bam 207.2 GB
EGAF00007917796 bam 199.1 GB
EGAF00007917797 bam 214.8 GB
EGAF00007917798 bam 168.1 GB
EGAF00007917799 bam 199.4 GB
EGAF00007917800 bam 180.5 GB
EGAF00007917801 bam 175.7 GB
EGAF00007917802 bam 188.9 GB
EGAF00007917803 bam 181.9 GB
EGAF00007917804 bam 168.5 GB
EGAF00007917805 bam 194.7 GB
EGAF00007917806 bam 196.2 GB
EGAF00007917807 bam 203.3 GB
EGAF00007917808 bam 200.1 GB
EGAF00007917809 bam 212.2 GB
EGAF00007917810 bam 195.6 GB
EGAF00007917811 bam 195.5 GB
EGAF00007917812 bam 201.1 GB
EGAF00007917813 bam 217.6 GB
EGAF00007917814 bam 219.6 GB
EGAF00007917815 bam 187.9 GB
EGAF00007917816 bam 208.3 GB
EGAF00007917817 bam 182.4 GB
EGAF00007917818 bam 193.8 GB
EGAF00007917819 bam 194.2 GB
EGAF00007917820 bam 215.3 GB
EGAF00007917821 bam 194.9 GB
EGAF00007917822 bam 191.8 GB
EGAF00007917823 bam 203.3 GB
EGAF00007917824 bam 206.0 GB
EGAF00007917825 bam 184.7 GB
EGAF00007917826 bam 216.7 GB
EGAF00007919277 bam 197.3 GB
EGAF00007919278 bam 215.5 GB
EGAF00007919279 bam 179.0 GB
EGAF00007919280 bam 183.2 GB
EGAF00007919281 bam 186.3 GB
EGAF00008094694 bam 193.4 GB
EGAF00008094695 bam 203.6 GB
EGAF00008094696 bam 191.1 GB
EGAF00008094697 bam 185.7 GB
EGAF00008094698 bam 176.3 GB
EGAF00008094699 bam 228.3 GB
EGAF00008094700 bam 221.3 GB
EGAF00008094701 bam 197.6 GB
EGAF00008094702 bam 205.7 GB
EGAF00008094703 bam 188.4 GB
EGAF00008094704 bam 191.6 GB
EGAF00008094705 bam 210.1 GB
EGAF00008094706 bam 200.8 GB
EGAF00008094707 bam 166.0 GB
EGAF00008094708 bam 187.2 GB
EGAF00008094709 bam 191.3 GB
EGAF00008094710 bam 194.9 GB
EGAF00008094711 bam 192.7 GB
EGAF00008094712 bam 202.8 GB
EGAF00008094713 bam 190.4 GB
EGAF00008094714 bam 211.1 GB
EGAF00008094715 bam 212.6 GB
EGAF00008094716 bam 176.1 GB
EGAF00008094717 bam 198.9 GB
EGAF00008094718 bam 202.0 GB
EGAF00008094719 bam 204.9 GB
EGAF00008094720 bam 198.3 GB
EGAF00008094721 bam 206.4 GB
EGAF00008094722 bam 194.1 GB
EGAF00008094723 bam 183.0 GB
EGAF00008094724 bam 180.5 GB
EGAF00008094725 bam 201.8 GB
EGAF00008094726 bam 190.5 GB
EGAF00008094727 bam 183.8 GB
EGAF00008094728 bam 175.5 GB
EGAF00008094729 bam 186.9 GB
EGAF00008094730 bam 181.4 GB
EGAF00008094731 bam 204.3 GB
EGAF00008094732 bam 216.7 GB
EGAF00008094733 bam 176.4 GB
EGAF00008094734 bam 198.5 GB
EGAF00008094735 bam 195.3 GB
EGAF00008094736 bam 210.7 GB
EGAF00008094737 bam 208.8 GB
EGAF00008094738 bam 185.0 GB
EGAF00008094739 bam 185.4 GB
EGAF00008094740 bam 176.9 GB
EGAF00008094741 bam 183.1 GB
EGAF00008094742 bam 190.0 GB
EGAF00008094743 bam 169.7 GB
EGAF00008123825 bam 188.0 GB
EGAF00008123826 bam 195.6 GB
EGAF00008123827 bam 154.8 GB
EGAF00008123828 bam 195.1 GB
EGAF00008123829 bam 194.9 GB
EGAF00008123830 bam 206.0 GB
EGAF00008123831 bam 195.5 GB
EGAF00008123832 bam 195.4 GB
EGAF00008123833 bam 192.3 GB
EGAF00008123834 bam 160.3 GB
EGAF00008123835 bam 191.9 GB
EGAF00008123836 bam 202.2 GB
EGAF00008123837 bam 195.5 GB
EGAF00008123838 bam 188.7 GB
EGAF00008123839 bam 192.7 GB
EGAF00008123840 bam 201.2 GB
EGAF00008123841 bam 210.9 GB
EGAF00008123842 bam 170.5 GB
EGAF00008123843 bam 201.4 GB
EGAF00008123844 bam 182.5 GB
EGAF00008123845 bam 184.3 GB
EGAF00008123846 bam 195.3 GB
EGAF00008123847 bam 186.6 GB
EGAF00008123848 bam 194.0 GB
EGAF00008123849 bam 183.4 GB
EGAF00008123850 bam 198.0 GB
EGAF00008123851 bam 186.8 GB
EGAF00008123852 bam 174.9 GB
EGAF00008123853 bam 201.9 GB
EGAF00008123854 bam 190.2 GB
EGAF00008123855 bam 194.2 GB
EGAF00008123856 bam 180.0 GB
EGAF00008123857 bam 191.5 GB
EGAF00008123858 bam 189.8 GB
EGAF00008123859 bam 201.9 GB
EGAF00008123860 bam 180.3 GB
EGAF00008123861 bam 184.1 GB
EGAF00008123862 bam 169.8 GB
EGAF00008123863 bam 181.5 GB
EGAF00008123864 bam 193.9 GB
EGAF00008123865 bam 194.7 GB
EGAF00008123866 bam 183.2 GB
EGAF00008123867 bam 192.8 GB
EGAF00008123868 bam 198.7 GB
EGAF00008123869 bam 204.8 GB
EGAF00008123870 bam 189.7 GB
EGAF00008123871 bam 205.7 GB
297 Files (58.5 TB)